Wall clock time and date at job start Tue Mar 31 2020 21:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47521 * 2 1 4 4 C 1.34776 * 120.00575 * 179.97438 * 3 2 1 5 5 O 1.21590 * 119.99687 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00219 * 179.97438 * 4 3 2 7 7 C 1.47416 * 125.64868 * 0.04457 * 6 4 3 8 8 C 1.54908 * 104.83252 * 204.08917 * 7 6 4 9 9 C 1.55154 * 101.58031 * 322.98980 * 8 7 6 10 10 H 1.08993 * 110.87462 * 277.06253 * 9 8 7 11 11 N 1.46504 * 110.71901 * 153.86541 * 9 8 7 12 12 C 1.34771 * 119.99998 * 160.02456 * 11 9 8 13 13 O 1.21588 * 120.00388 * 4.70031 * 12 11 9 14 14 N 1.34781 * 119.99984 * 184.97472 * 12 11 9 15 15 C 1.46930 * 120.62610 * 354.19829 * 14 12 11 16 16 C 1.52759 * 109.00717 * 233.58049 * 15 14 12 17 17 C 1.53032 * 109.38920 * 305.59508 * 16 15 14 18 18 C 1.53043 * 109.53809 * 61.23761 * 17 16 15 19 19 H 1.09001 * 109.49484 * 58.58750 * 18 17 16 20 20 C 1.50703 * 109.49490 * 178.68541 * 18 17 16 21 21 H 1.07993 * 120.00513 * 359.83453 * 20 18 17 22 22 C 1.37881 * 119.99647 * 179.84023 * 20 18 17 23 23 N 1.31520 * 120.00071 * 359.97438 * 22 20 18 24 24 Si 1.86791 * 120.00059 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47481 * 89.99852 * 24 22 20 26 26 H 1.48501 * 109.47560 * 210.00010 * 24 22 20 27 27 H 1.48506 * 109.47412 * 329.99706 * 24 22 20 28 28 C 1.46920 * 120.63166 * 174.48241 * 14 12 11 29 29 C 1.47015 * 125.64700 * 179.97438 * 6 4 3 30 30 H 1.09002 * 109.47094 * 299.99856 * 1 2 3 31 31 H 1.09003 * 109.47160 * 59.99798 * 1 2 3 32 32 H 1.08998 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47523 * 239.99887 * 2 1 3 34 34 H 1.09003 * 109.47160 * 120.00202 * 2 1 3 35 35 H 0.97006 * 119.99858 * 359.97438 * 3 2 1 36 36 H 1.09004 * 110.36607 * 322.93196 * 7 6 4 37 37 H 1.09003 * 110.36751 * 85.25048 * 7 6 4 38 38 H 1.08998 * 111.00622 * 204.91291 * 8 7 6 39 39 H 1.09003 * 111.00423 * 81.06707 * 8 7 6 40 40 H 0.97003 * 120.00095 * 340.01810 * 11 9 8 41 41 H 1.08993 * 109.58820 * 353.42433 * 15 14 12 42 42 H 1.09007 * 109.58112 * 113.84721 * 15 14 12 43 43 H 1.09004 * 109.56487 * 185.55558 * 16 15 14 44 44 H 1.09002 * 109.35477 * 65.51022 * 16 15 14 45 45 H 1.09003 * 109.46209 * 301.22112 * 17 16 15 46 46 H 1.09006 * 109.46372 * 181.25985 * 17 16 15 47 47 H 0.96995 * 119.99959 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.58910 * 246.15615 * 28 14 12 49 49 H 1.09000 * 109.58836 * 6.58371 * 28 14 12 50 50 H 1.09006 * 109.88369 * 59.56168 * 29 6 4 51 51 H 1.09004 * 110.01557 * 298.47083 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7033 0.0015 6 7 3.7927 2.8982 0.0000 7 6 2.9497 4.1075 -0.0002 8 6 3.8442 5.2144 -0.6120 9 6 5.2342 4.8504 -0.0266 10 1 5.3488 5.2517 0.9802 11 7 6.3069 5.3330 -0.9000 12 6 7.5539 5.4886 -0.4129 13 8 7.8084 5.1483 0.7263 14 7 8.5174 6.0266 -1.1867 15 6 8.2589 6.3311 -2.6006 16 6 9.3312 5.6611 -3.4579 17 6 10.7156 6.0885 -2.9654 18 6 10.9041 5.6390 -1.5147 19 1 10.7925 4.5566 -1.4518 20 6 12.2798 6.0319 -1.0411 21 1 12.9538 6.5480 -1.7087 22 6 12.6779 5.7323 0.2445 23 7 11.8570 5.1041 1.0576 24 14 14.3833 6.2186 0.8314 25 1 14.3325 7.5770 1.4291 26 1 14.8519 5.2463 1.8513 27 1 15.3215 6.2191 -0.3197 28 6 9.8480 6.3140 -0.6339 29 6 5.2046 3.3077 0.0010 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.3880 2.1185 -0.0004 36 1 2.0637 3.9522 -0.6159 37 1 2.6635 4.3707 1.0181 38 1 3.5264 6.2023 -0.2787 39 1 3.8507 5.1544 -1.7003 40 1 6.1197 5.5405 -1.8289 41 1 7.2771 5.9509 -2.8827 42 1 8.2933 7.4097 -2.7543 43 1 9.2066 5.9609 -4.4985 44 1 9.2343 4.5784 -3.3767 45 1 10.8029 7.1735 -3.0236 46 1 11.4813 5.6288 -3.5904 47 1 12.1372 4.8931 1.9619 48 1 10.0147 7.3911 -0.6239 49 1 9.9143 5.9225 0.3812 50 1 5.7062 2.9116 -0.8820 51 1 5.6981 2.9434 0.9021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595562006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:42 Heat of formation + Delta-G solvation = -50.366521 kcal Electronic energy + Delta-G solvation = -30198.240744 eV Core-core repulsion = 26132.698658 eV Total energy + Delta-G solvation = -4065.542085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.55342 -39.68364 -37.98717 -36.62871 -35.43058 -34.12256 -33.21849 -31.82211 -31.11927 -30.18438 -29.70148 -28.23102 -25.05245 -24.72794 -23.77932 -22.84435 -21.83586 -21.27940 -20.38928 -19.87257 -18.89252 -18.35148 -17.41418 -16.90629 -16.26618 -16.12625 -15.79457 -15.17817 -14.84185 -14.73096 -14.48414 -14.21969 -13.85473 -13.69258 -13.58944 -13.48735 -13.23573 -12.83632 -12.70310 -12.57361 -12.54163 -12.27403 -12.17987 -12.07884 -11.88206 -11.81005 -11.62908 -11.09052 -10.95499 -10.85538 -10.49074 -10.38102 -10.29415 -10.20434 -9.85160 -9.45742 -9.36681 -9.06811 -8.91480 -8.89611 -8.65769 -8.38724 -7.64585 -5.93921 -4.03380 2.35302 3.07117 3.18026 3.34524 3.41572 3.43769 3.72521 3.78208 4.16377 4.37497 4.47959 4.48430 4.64994 4.73037 4.75416 4.96228 5.03203 5.07940 5.20815 5.27387 5.35429 5.44364 5.50079 5.52533 5.56847 5.62364 5.63268 5.65525 5.88485 5.97361 5.99690 6.08688 6.17662 6.25048 6.33197 6.60329 6.68851 6.72450 6.81823 6.84441 7.01136 7.05475 7.36400 7.50161 7.76938 7.77979 7.96477 8.09880 8.44708 8.45128 8.56426 9.00189 9.23180 9.61996 11.10875 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.002327 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.238963 B =12031.322122 C =12637.433601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.748 5.748 4 C 0.719 3.281 5 O -0.584 6.584 6 N -0.635 5.635 7 C 0.103 3.897 8 C -0.138 4.138 9 C 0.160 3.840 10 H 0.104 0.896 11 N -0.748 5.748 12 C 0.700 3.300 13 O -0.577 6.577 14 N -0.621 5.621 15 C 0.116 3.884 16 C -0.135 4.135 17 C -0.109 4.109 18 C 0.039 3.961 19 H 0.029 0.971 20 C -0.522 4.522 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.877 5.877 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.128 3.872 29 C 0.113 3.887 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.394 0.606 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.392 0.608 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.263 0.737 48 H 0.039 0.961 49 H 0.124 0.876 50 H 0.071 0.929 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.666 -0.440 -6.159 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.405 5.405 4 C 0.421 3.579 5 O -0.461 6.461 6 N -0.374 5.374 7 C -0.021 4.021 8 C -0.176 4.176 9 C 0.052 3.948 10 H 0.122 0.878 11 N -0.407 5.407 12 C 0.401 3.599 13 O -0.453 6.453 14 N -0.358 5.358 15 C -0.008 4.008 16 C -0.173 4.173 17 C -0.147 4.147 18 C 0.019 3.981 19 H 0.047 0.953 20 C -0.560 4.560 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.515 5.515 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.200 1.200 28 C 0.008 3.992 29 C -0.011 4.011 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.228 0.772 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.142 0.858 50 H 0.089 0.911 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.877 -1.538 -5.095 25.439 hybrid contribution 0.471 0.689 -0.213 0.862 sum -24.406 -0.849 -5.307 24.990 Atomic orbital electron populations 1.22005 0.94484 1.03252 1.02411 1.21150 0.93709 0.81849 1.02484 1.45175 1.05214 1.09007 1.81096 1.15430 0.82558 0.81844 0.78072 1.90967 1.54960 1.42404 1.57760 1.47522 1.08104 1.03560 1.78260 1.22240 0.94173 0.84698 1.00992 1.23054 0.94243 0.98948 1.01398 1.21611 0.85367 0.91988 0.95785 0.87808 1.45291 1.08124 1.73409 1.13854 1.15970 0.80144 0.78788 0.84977 1.90952 1.80726 1.55648 1.18015 1.47794 1.13856 1.64832 1.09276 1.21399 0.97471 0.99478 0.82425 1.21879 0.97090 1.00643 0.97685 1.21610 0.93609 0.99875 0.99609 1.18990 0.93804 0.96479 0.88779 0.95303 1.21062 0.98589 1.38657 0.97712 0.92420 1.25069 0.97199 0.94845 0.96990 1.69901 1.35146 1.39499 1.06924 0.86604 0.84650 0.78265 0.78527 1.20686 1.21234 1.19988 1.22202 0.76300 0.97944 1.02766 1.22340 0.80300 0.94972 1.03523 0.92012 0.92055 0.90656 0.91640 0.91583 0.77188 0.90808 0.90956 0.88909 0.89977 0.77101 0.92249 0.92151 0.92310 0.92183 0.93215 0.93078 0.92650 0.94228 0.85836 0.91070 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 10.03 37.15 0.37 -0.35 16 2 C 0.13 1.06 6.39 -4.05 -0.03 1.03 16 3 N -0.75 -6.77 5.52 -65.23 -0.36 -7.13 16 4 C 0.72 9.76 8.49 -86.92 -0.74 9.02 16 5 O -0.58 -10.82 16.67 5.29 0.09 -10.74 16 6 N -0.64 -7.45 3.33 -176.25 -0.59 -8.03 16 7 C 0.10 0.72 6.57 -2.53 -0.02 0.70 16 8 C -0.14 -0.99 6.69 -24.58 -0.16 -1.16 16 9 C 0.16 1.93 3.20 -66.10 -0.21 1.72 16 10 H 0.10 1.41 7.76 -51.93 -0.40 1.00 16 11 N -0.75 -10.46 5.04 -56.89 -0.29 -10.74 16 12 C 0.70 13.91 8.29 -86.92 -0.72 13.19 16 13 O -0.58 -14.25 15.53 5.29 0.08 -14.17 16 14 N -0.62 -12.33 2.98 -178.77 -0.53 -12.86 16 15 C 0.12 1.75 6.36 -3.93 -0.02 1.72 16 16 C -0.13 -2.15 6.06 -26.84 -0.16 -2.32 16 17 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 18 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 19 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 20 C -0.52 -14.25 8.56 -34.44 -0.29 -14.55 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.88 -26.05 11.39 55.43 0.63 -25.42 16 24 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.13 3.12 5.41 -3.71 -0.02 3.10 16 29 C 0.11 1.62 6.62 -3.07 -0.02 1.60 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.39 2.35 6.95 -40.82 -0.28 2.07 16 36 H 0.07 0.34 7.30 -51.93 -0.38 -0.04 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.53 8.00 -51.93 -0.42 0.11 16 40 H 0.39 4.37 6.01 -40.82 -0.25 4.12 16 41 H 0.06 0.69 5.66 -51.93 -0.29 0.39 16 42 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.12 3.54 5.11 -51.93 -0.27 3.28 16 50 H 0.07 1.14 8.03 -51.93 -0.42 0.72 16 51 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -36.47 399.66 -11.01 -47.48 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.59 Total: 5.27 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -2.46 Total: 13.81 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.13 Total: -64.18 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.17 Total: -24.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.47 -11.01 -47.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595562006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.885 kcal (2) G-P(sol) polarization free energy of solvation -36.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds