Wall clock time and date at job start Tue Mar 31 2020 21:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47521 * 2 1 4 4 C 1.34776 * 120.00575 * 179.97438 * 3 2 1 5 5 O 1.21590 * 119.99687 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00219 * 179.97438 * 4 3 2 7 7 C 1.47416 * 125.64868 * 0.04457 * 6 4 3 8 8 C 1.54908 * 104.83252 * 204.08917 * 7 6 4 9 9 C 1.55154 * 101.58031 * 322.98980 * 8 7 6 10 10 H 1.08993 * 110.87462 * 277.06253 * 9 8 7 11 11 N 1.46504 * 110.71901 * 153.86541 * 9 8 7 12 12 C 1.34771 * 119.99998 * 160.02456 * 11 9 8 13 13 O 1.21588 * 120.00388 * 4.70031 * 12 11 9 14 14 N 1.34781 * 119.99984 * 184.97472 * 12 11 9 15 15 C 1.46930 * 120.62610 * 354.19829 * 14 12 11 16 16 C 1.52759 * 109.00717 * 233.58049 * 15 14 12 17 17 C 1.53032 * 109.38920 * 305.59508 * 16 15 14 18 18 C 1.53043 * 109.53809 * 61.23761 * 17 16 15 19 19 H 1.09001 * 109.49484 * 58.58750 * 18 17 16 20 20 C 1.50703 * 109.49490 * 178.68541 * 18 17 16 21 21 H 1.07993 * 120.00513 * 359.83453 * 20 18 17 22 22 C 1.37881 * 119.99647 * 179.84023 * 20 18 17 23 23 N 1.31520 * 120.00071 * 359.97438 * 22 20 18 24 24 Si 1.86791 * 120.00059 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47481 * 89.99852 * 24 22 20 26 26 H 1.48501 * 109.47560 * 210.00010 * 24 22 20 27 27 H 1.48506 * 109.47412 * 329.99706 * 24 22 20 28 28 C 1.46920 * 120.63166 * 174.48241 * 14 12 11 29 29 C 1.47015 * 125.64700 * 179.97438 * 6 4 3 30 30 H 1.09002 * 109.47094 * 299.99856 * 1 2 3 31 31 H 1.09003 * 109.47160 * 59.99798 * 1 2 3 32 32 H 1.08998 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47523 * 239.99887 * 2 1 3 34 34 H 1.09003 * 109.47160 * 120.00202 * 2 1 3 35 35 H 0.97006 * 119.99858 * 359.97438 * 3 2 1 36 36 H 1.09004 * 110.36607 * 322.93196 * 7 6 4 37 37 H 1.09003 * 110.36751 * 85.25048 * 7 6 4 38 38 H 1.08998 * 111.00622 * 204.91291 * 8 7 6 39 39 H 1.09003 * 111.00423 * 81.06707 * 8 7 6 40 40 H 0.97003 * 120.00095 * 340.01810 * 11 9 8 41 41 H 1.08993 * 109.58820 * 353.42433 * 15 14 12 42 42 H 1.09007 * 109.58112 * 113.84721 * 15 14 12 43 43 H 1.09004 * 109.56487 * 185.55558 * 16 15 14 44 44 H 1.09002 * 109.35477 * 65.51022 * 16 15 14 45 45 H 1.09003 * 109.46209 * 301.22112 * 17 16 15 46 46 H 1.09006 * 109.46372 * 181.25985 * 17 16 15 47 47 H 0.96995 * 119.99959 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.58910 * 246.15615 * 28 14 12 49 49 H 1.09000 * 109.58836 * 6.58371 * 28 14 12 50 50 H 1.09006 * 109.88369 * 59.56168 * 29 6 4 51 51 H 1.09004 * 110.01557 * 298.47083 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7033 0.0015 6 7 3.7927 2.8982 0.0000 7 6 2.9497 4.1075 -0.0002 8 6 3.8442 5.2144 -0.6120 9 6 5.2342 4.8504 -0.0266 10 1 5.3488 5.2517 0.9802 11 7 6.3069 5.3330 -0.9000 12 6 7.5539 5.4886 -0.4129 13 8 7.8084 5.1483 0.7263 14 7 8.5174 6.0266 -1.1867 15 6 8.2589 6.3311 -2.6006 16 6 9.3312 5.6611 -3.4579 17 6 10.7156 6.0885 -2.9654 18 6 10.9041 5.6390 -1.5147 19 1 10.7925 4.5566 -1.4518 20 6 12.2798 6.0319 -1.0411 21 1 12.9538 6.5480 -1.7087 22 6 12.6779 5.7323 0.2445 23 7 11.8570 5.1041 1.0576 24 14 14.3833 6.2186 0.8314 25 1 14.3325 7.5770 1.4291 26 1 14.8519 5.2463 1.8513 27 1 15.3215 6.2191 -0.3197 28 6 9.8480 6.3140 -0.6339 29 6 5.2046 3.3077 0.0010 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.3880 2.1185 -0.0004 36 1 2.0637 3.9522 -0.6159 37 1 2.6635 4.3707 1.0181 38 1 3.5264 6.2023 -0.2787 39 1 3.8507 5.1544 -1.7003 40 1 6.1197 5.5405 -1.8289 41 1 7.2771 5.9509 -2.8827 42 1 8.2933 7.4097 -2.7543 43 1 9.2066 5.9609 -4.4985 44 1 9.2343 4.5784 -3.3767 45 1 10.8029 7.1735 -3.0236 46 1 11.4813 5.6288 -3.5904 47 1 12.1372 4.8931 1.9619 48 1 10.0147 7.3911 -0.6239 49 1 9.9143 5.9225 0.3812 50 1 5.7062 2.9116 -0.8820 51 1 5.6981 2.9434 0.9021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595562006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:41 Heat of formation + Delta-G solvation = -77.912563 kcal Electronic energy + Delta-G solvation = -30199.435230 eV Core-core repulsion = 26132.698658 eV Total energy + Delta-G solvation = -4066.736571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67066 -41.05888 -39.13843 -38.14869 -36.32128 -35.61625 -34.96509 -33.45159 -32.10280 -31.44363 -30.87947 -29.26431 -27.01532 -26.14780 -24.77461 -23.51282 -23.45179 -22.33550 -21.70812 -21.07225 -20.39611 -19.38467 -18.87936 -18.16999 -17.92103 -17.24181 -16.92453 -16.58262 -16.35694 -15.97030 -15.67590 -15.22159 -15.13593 -15.11712 -15.03152 -14.61351 -14.46356 -14.26808 -14.03356 -13.83284 -13.60395 -13.44467 -13.23743 -12.91952 -12.87261 -12.70764 -12.65093 -12.59643 -12.37300 -12.28404 -12.23201 -11.90484 -11.78968 -11.62472 -11.45720 -11.22004 -10.94356 -10.82356 -10.51829 -10.32594 -10.25303 -9.58536 -9.26922 -8.09036 -6.27100 1.37186 1.40523 1.41608 1.52159 1.84851 2.03317 2.22404 2.42202 2.96305 3.07232 3.20059 3.45777 3.58876 4.00309 4.06597 4.12699 4.16843 4.18233 4.23778 4.29291 4.32183 4.53216 4.56881 4.62307 4.69777 4.73361 4.76918 4.81944 4.87848 4.90063 5.00005 5.04570 5.07794 5.11427 5.18850 5.27298 5.27868 5.28882 5.34114 5.47599 5.54823 5.57634 5.66480 5.90678 5.97422 5.99300 6.17543 6.36828 6.86718 6.92628 7.13750 7.42977 7.46618 7.69090 8.93802 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.002327 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.238963 B =12031.322122 C =12637.433601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.127 3.873 3 N -0.725 5.725 4 C 0.709 3.291 5 O -0.646 6.646 6 N -0.633 5.633 7 C 0.098 3.902 8 C -0.117 4.117 9 C 0.158 3.842 10 H 0.086 0.914 11 N -0.721 5.721 12 C 0.693 3.307 13 O -0.637 6.637 14 N -0.627 5.627 15 C 0.111 3.889 16 C -0.128 4.128 17 C -0.104 4.104 18 C 0.036 3.964 19 H -0.021 1.021 20 C -0.534 4.534 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.915 5.915 24 Si 0.959 3.041 25 H -0.272 1.272 26 H -0.290 1.290 27 H -0.262 1.262 28 C 0.143 3.857 29 C 0.118 3.882 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.412 0.588 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.258 0.742 48 H 0.039 0.961 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.946 1.956 -8.844 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.003 3.997 3 N -0.383 5.383 4 C 0.411 3.589 5 O -0.528 6.528 6 N -0.371 5.371 7 C -0.024 4.024 8 C -0.155 4.155 9 C 0.051 3.949 10 H 0.105 0.895 11 N -0.381 5.381 12 C 0.394 3.606 13 O -0.518 6.518 14 N -0.362 5.362 15 C -0.011 4.011 16 C -0.166 4.166 17 C -0.142 4.142 18 C 0.017 3.983 19 H -0.003 1.003 20 C -0.573 4.573 21 H 0.082 0.918 22 C -0.193 4.193 23 N -0.554 5.554 24 Si 0.784 3.216 25 H -0.198 1.198 26 H -0.216 1.216 27 H -0.187 1.187 28 C 0.020 3.980 29 C -0.008 4.008 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.251 0.749 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.252 0.748 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.092 0.908 50 H 0.066 0.934 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -28.268 0.918 -7.863 29.355 hybrid contribution 1.465 -0.115 0.613 1.592 sum -26.803 0.804 -7.250 27.778 Atomic orbital electron populations 1.21940 0.91015 1.04366 1.03556 1.21279 0.96354 0.80992 1.01059 1.45023 1.03680 1.10220 1.79405 1.15784 0.83550 0.81689 0.77927 1.90919 1.56860 1.44544 1.60477 1.47484 1.07581 1.04559 1.77504 1.22644 0.94545 0.82212 1.02978 1.23094 0.89643 1.00402 1.02380 1.21721 0.87622 0.90050 0.95516 0.89547 1.44994 1.06270 1.71894 1.14908 1.16248 0.81665 0.78393 0.84281 1.90916 1.81992 1.57962 1.20882 1.47684 1.12254 1.64805 1.11501 1.21789 0.99241 1.01220 0.78855 1.21853 0.94678 0.99741 1.00364 1.21496 0.96443 1.00426 0.95797 1.18933 0.93295 0.93477 0.92635 1.00271 1.21522 0.99951 1.37998 0.97828 0.91844 1.25949 1.01101 0.94905 0.97336 1.70124 1.37159 1.41154 1.06964 0.85543 0.80003 0.77948 0.78099 1.19760 1.21616 1.18650 1.21558 0.78866 0.97108 1.00461 1.22058 0.81864 0.96660 1.00208 0.90960 0.90676 0.89620 0.92991 0.93344 0.74897 0.86910 0.89383 0.85770 0.87966 0.74833 0.88025 0.89627 0.87541 0.93857 0.92008 0.93298 0.93265 0.94310 0.90769 0.93378 0.95045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.03 71.98 0.72 -0.23 16 2 C 0.13 1.96 6.39 86.38 0.55 2.51 16 3 N -0.73 -12.11 5.52 -478.54 -2.64 -14.75 16 4 C 0.71 19.47 8.49 179.05 1.52 20.99 16 5 O -0.65 -25.56 16.67 -4.00 -0.07 -25.63 16 6 N -0.63 -14.53 3.33 -829.78 -2.76 -17.29 16 7 C 0.10 1.01 6.57 86.86 0.57 1.58 16 8 C -0.12 -1.19 6.69 31.98 0.21 -0.98 16 9 C 0.16 3.73 3.20 46.18 0.15 3.87 16 10 H 0.09 2.40 7.76 -2.39 -0.02 2.38 16 11 N -0.72 -19.44 5.04 -452.15 -2.28 -21.72 16 12 C 0.69 28.37 8.29 179.05 1.48 29.85 16 13 O -0.64 -33.83 15.53 -3.99 -0.06 -33.89 16 14 N -0.63 -25.08 2.98 -837.75 -2.50 -27.58 16 15 C 0.11 2.99 6.36 86.22 0.55 3.54 16 16 C -0.13 -3.77 6.06 30.52 0.19 -3.58 16 17 C -0.10 -4.04 5.11 30.62 0.16 -3.89 16 18 C 0.04 1.87 2.25 -11.46 -0.03 1.84 16 19 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 20 C -0.53 -30.10 8.56 25.60 0.22 -29.89 16 21 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 22 C 0.01 0.37 5.30 84.65 0.45 0.81 16 23 N -0.92 -57.78 11.39 21.45 0.24 -57.54 16 24 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 28 C 0.14 7.27 5.41 86.36 0.47 7.74 16 29 C 0.12 3.57 6.62 86.73 0.57 4.14 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.41 3.55 6.95 -92.70 -0.64 2.90 16 36 H 0.11 0.39 7.30 -2.38 -0.02 0.37 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 0.73 8.00 -2.39 -0.02 0.71 16 40 H 0.41 7.77 6.01 -92.71 -0.56 7.21 16 41 H 0.10 1.88 5.66 -2.39 -0.01 1.86 16 42 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 47 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 48 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.07 4.57 5.11 -2.39 -0.01 4.56 16 50 H 0.05 1.64 8.03 -2.38 -0.02 1.62 16 51 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -92.42 399.66 -0.51 -92.93 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.27 Total: 19.69 kcal Atomic # 6 Polarization: 30.54 SS G_CDS: 7.78 Total: 38.33 kcal Atomic # 7 Polarization: -128.95 SS G_CDS: -9.93 Total: -138.88 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -0.13 Total: -59.52 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -92.42 -0.51 -92.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595562006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.016 kcal (2) G-P(sol) polarization free energy of solvation -92.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds