Wall clock time and date at job start Tue Mar 31 2020 21:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47429 * 2 1 4 4 C 1.36451 * 127.13369 * 90.60790 * 3 2 1 5 5 N 1.38573 * 126.47828 * 359.94822 * 4 3 2 6 6 C 1.46898 * 111.00095 * 243.53362 * 5 4 3 7 7 C 1.46892 * 111.00320 * 119.57433 * 5 4 3 8 8 H 1.08997 * 109.47068 * 59.99983 * 7 5 4 9 9 C 1.53005 * 109.47086 * 300.00139 * 7 5 4 10 10 C 1.50698 * 109.47371 * 180.02562 * 7 5 4 11 11 H 1.08002 * 119.99791 * 0.02562 * 10 7 5 12 12 C 1.37878 * 120.00407 * 179.97438 * 10 7 5 13 13 N 1.31519 * 119.99907 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00427 * 180.02562 * 12 10 7 15 15 H 1.48508 * 109.46845 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47319 * 119.99984 * 14 12 10 17 17 H 1.48500 * 109.46972 * 240.00366 * 14 12 10 18 18 N 1.31222 * 107.05090 * 179.97438 * 4 3 2 19 19 N 1.28529 * 109.86088 * 359.97438 * 18 4 3 20 20 C 1.30291 * 110.05324 * 0.02562 * 19 18 4 21 21 C 1.50700 * 126.34801 * 179.97438 * 20 19 18 22 22 O 1.42904 * 109.54545 * 125.25719 * 21 20 19 23 23 C 1.42899 * 113.99697 * 302.38728 * 22 21 20 24 24 C 1.53183 * 109.54434 * 5.08136 * 21 20 19 25 25 C 1.53104 * 109.15584 * 183.24072 * 24 21 20 26 26 O 1.42902 * 109.48754 * 57.47614 * 25 24 21 27 27 C 1.42897 * 114.09681 * 298.88476 * 26 25 24 28 28 C 1.53091 * 109.41653 * 61.16240 * 27 26 25 29 29 H 1.08990 * 109.47417 * 173.60071 * 1 2 3 30 30 H 1.09000 * 109.47268 * 293.61077 * 1 2 3 31 31 H 1.09008 * 109.46730 * 53.60257 * 1 2 3 32 32 H 1.08998 * 109.47176 * 240.00028 * 2 1 3 33 33 H 1.08998 * 109.46836 * 120.00190 * 2 1 3 34 34 H 1.08999 * 109.47218 * 72.70368 * 6 5 4 35 35 H 1.08996 * 109.47017 * 192.71134 * 6 5 4 36 36 H 1.09006 * 109.47091 * 312.70751 * 6 5 4 37 37 H 1.09003 * 109.46844 * 179.97438 * 9 7 5 38 38 H 1.08997 * 109.47039 * 299.99861 * 9 7 5 39 39 H 1.08993 * 109.46740 * 60.00053 * 9 7 5 40 40 H 0.96996 * 119.99765 * 179.97438 * 13 12 10 41 41 H 1.09000 * 109.47021 * 180.08570 * 23 22 21 42 42 H 1.08998 * 109.46943 * 300.08256 * 23 22 21 43 43 H 1.08997 * 109.47457 * 60.08623 * 23 22 21 44 44 H 1.09000 * 109.51975 * 303.05797 * 24 21 20 45 45 H 1.08995 * 109.51850 * 63.24376 * 24 21 20 46 46 H 1.08998 * 109.40848 * 297.49227 * 25 24 21 47 47 H 1.08997 * 109.48680 * 177.50835 * 25 24 21 48 48 H 1.09001 * 109.48200 * 301.17611 * 27 26 25 49 49 H 1.09002 * 109.49244 * 181.14838 * 27 26 25 50 50 H 1.09007 * 109.52594 * 182.48933 * 28 27 26 51 51 H 1.08996 * 109.52591 * 62.29392 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3039 2.1540 1.0878 5 7 2.1859 1.7810 2.4171 6 6 1.1815 2.6015 3.1070 7 6 3.4839 1.8523 3.1011 8 1 3.8623 2.8735 3.0570 9 6 4.4751 0.9110 2.4136 10 6 3.3164 1.4399 4.5409 11 1 2.3430 1.1532 4.9107 12 6 4.4058 1.4278 5.3859 13 7 5.5915 1.7755 4.9352 14 14 4.1983 0.9160 7.1703 15 1 2.7758 0.5738 7.4249 16 1 5.0502 -0.2683 7.4480 17 1 4.6036 2.0362 8.0569 18 7 2.7108 3.3173 0.6372 19 7 2.6971 3.3168 -0.6480 20 6 2.2837 2.1630 -1.0900 21 6 2.1265 1.7642 -2.5347 22 8 2.8665 0.5672 -2.7835 23 6 4.2589 0.6709 -2.4789 24 6 2.6499 2.8867 -3.4361 25 6 2.4122 2.5075 -4.9003 26 8 1.0192 2.2678 -5.1106 27 6 0.4870 1.1965 -4.3290 28 6 0.6452 1.5239 -2.8419 29 1 -0.3634 -1.0211 -0.1145 30 1 -0.3634 0.4116 0.9416 31 1 -0.3633 0.6099 -0.8273 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.1848 2.3107 2.7753 35 1 1.2652 2.4496 4.1830 36 1 1.3494 3.6531 2.8743 37 1 5.4384 0.9642 2.9210 38 1 4.0967 -0.1103 2.4578 39 1 4.5963 1.2088 1.3722 40 1 6.3578 1.7673 5.5297 41 1 4.7499 -0.2777 -2.6962 42 1 4.7057 1.4586 -3.0854 43 1 4.3830 0.9107 -1.4229 44 1 2.1201 3.8121 -3.2102 45 1 3.7170 3.0253 -3.2629 46 1 2.9760 1.6051 -5.1368 47 1 2.7423 3.3219 -5.5451 48 1 1.0256 0.2769 -4.5580 49 1 -0.5698 1.0663 -4.5621 50 1 0.2801 0.6887 -2.2441 51 1 0.0737 2.4209 -2.6036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597294419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:56 Heat of formation + Delta-G solvation = 9.187100 kcal Electronic energy + Delta-G solvation = -32565.153943 eV Core-core repulsion = 28502.194297 eV Total energy + Delta-G solvation = -4062.959646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.71897 -40.08263 -37.46954 -36.97744 -35.40667 -33.23796 -32.75535 -31.45072 -30.41920 -29.59839 -28.99277 -27.03256 -25.88840 -24.88554 -24.35750 -23.97722 -23.62445 -21.82461 -21.09664 -19.87550 -19.34845 -17.20251 -16.95900 -16.54097 -16.21627 -16.09104 -15.79735 -15.55577 -15.40639 -15.18311 -14.63428 -14.53888 -14.01754 -13.74734 -13.36399 -13.22248 -13.10684 -12.93155 -12.86476 -12.67285 -12.41141 -12.10829 -11.91735 -11.72610 -11.54663 -11.43305 -11.16467 -11.15010 -10.98426 -10.83779 -10.79788 -10.63178 -10.40703 -10.31635 -10.16242 -10.09362 -9.96662 -9.79050 -9.65343 -9.12178 -8.59792 -8.52366 -7.76135 -6.12896 -4.19548 2.07114 2.62086 3.20000 3.23324 3.31517 3.34643 3.48156 3.68021 4.12486 4.28819 4.43395 4.54217 4.59129 4.71156 4.83349 5.01887 5.06073 5.11662 5.19038 5.19591 5.21694 5.24125 5.33081 5.37949 5.45948 5.53109 5.54910 5.60977 5.68402 5.72141 5.74080 5.85725 5.90401 6.01752 6.08133 6.15324 6.29663 6.46642 6.59319 6.67654 6.83396 6.86012 6.88481 6.98140 7.09151 7.33939 7.59884 7.69378 7.86168 8.12625 8.40220 8.84245 9.17475 9.45472 10.94046 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.003267 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.569427 B = 8568.417937 C = 8860.816938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 N -0.455 5.455 4 C 0.389 3.611 5 N -0.473 5.473 6 C 0.042 3.958 7 C 0.225 3.775 8 H 0.020 0.980 9 C -0.129 4.129 10 C -0.512 4.512 11 H 0.068 0.932 12 C 0.063 3.937 13 N -0.887 5.887 14 Si 0.901 3.099 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.321 5.321 19 N -0.276 5.276 20 C 0.125 3.875 21 C 0.216 3.784 22 O -0.373 6.373 23 C 0.026 3.974 24 C -0.165 4.165 25 C 0.067 3.933 26 O -0.382 6.382 27 C 0.067 3.933 28 C -0.150 4.150 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.032 0.968 37 H 0.092 0.908 38 H 0.031 0.969 39 H -0.001 1.001 40 H 0.262 0.738 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.056 0.944 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.096 0.904 50 H 0.092 0.908 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 -4.620 -17.387 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.147 5.147 4 C 0.033 3.967 5 N -0.200 5.200 6 C -0.105 4.105 7 C 0.120 3.880 8 H 0.038 0.962 9 C -0.187 4.187 10 C -0.550 4.550 11 H 0.086 0.914 12 C -0.140 4.140 13 N -0.525 5.525 14 Si 0.729 3.271 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.165 5.165 19 N -0.119 5.119 20 C -0.143 4.143 21 C 0.174 3.826 22 O -0.290 6.290 23 C -0.070 4.070 24 C -0.204 4.204 25 C -0.010 4.010 26 O -0.301 6.301 27 C -0.010 4.010 28 C -0.188 4.188 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.051 0.949 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.115 0.885 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.111 0.889 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.293 -3.772 -17.486 19.717 hybrid contribution 0.269 -0.834 1.551 1.781 sum -8.024 -4.606 -15.935 18.426 Atomic orbital electron populations 1.22319 0.94419 1.02999 1.03279 1.21869 0.95368 0.79343 1.05272 1.46367 1.49057 1.13538 1.05769 1.22895 0.97599 0.86471 0.89737 1.59230 1.13669 1.52797 0.94292 1.22326 0.92399 0.94614 1.01179 1.19412 0.80525 0.95918 0.92097 0.96177 1.21800 1.03087 0.98190 0.95617 1.21082 0.95221 1.45909 0.92829 0.91398 1.24920 0.95048 0.95047 0.98944 1.69907 0.99422 1.47644 1.35574 0.86396 0.78283 0.78185 0.84279 1.19632 1.20970 1.20958 1.74704 1.20903 1.18446 1.02417 1.73921 1.16563 1.17351 1.04040 1.24908 1.07349 0.90544 0.91518 1.19566 0.92915 0.85813 0.84304 1.87908 1.20573 1.34137 1.86398 1.22824 0.81192 1.02554 1.00415 1.22580 1.03634 0.99023 0.95120 1.22544 0.82446 1.01089 0.94938 1.87917 1.24107 1.53612 1.64462 1.22518 0.99573 0.90110 0.88757 1.22546 0.92929 1.04409 0.98926 0.90530 0.91397 0.91714 0.88639 0.87845 0.93598 0.88400 0.94884 0.88959 0.94942 0.98198 0.92754 0.89172 0.93219 0.93633 0.88801 0.89587 0.92581 0.88494 0.92066 0.88614 0.88948 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.78 37.16 0.36 -1.50 16 2 C 0.10 1.40 6.19 -4.04 -0.03 1.37 16 3 N -0.45 -7.65 2.81 -114.09 -0.32 -7.97 16 4 C 0.39 8.00 5.03 -318.88 -1.60 6.40 16 5 N -0.47 -10.17 4.66 -176.09 -0.82 -10.99 16 6 C 0.04 0.83 9.53 60.06 0.57 1.41 16 7 C 0.22 5.66 2.00 -68.87 -0.14 5.52 16 8 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 9 C -0.13 -3.17 8.84 37.16 0.33 -2.84 16 10 C -0.51 -13.40 7.70 -34.44 -0.27 -13.66 16 11 H 0.07 1.73 6.54 -52.49 -0.34 1.39 16 12 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 13 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 14 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 N -0.32 -7.18 11.96 30.31 0.36 -6.82 16 19 N -0.28 -5.47 11.48 32.99 0.38 -5.09 16 20 C 0.12 2.04 5.06 -154.02 -0.78 1.26 16 21 C 0.22 2.71 0.41 -91.58 -0.04 2.67 16 22 O -0.37 -4.44 7.98 -35.23 -0.28 -4.73 16 23 C 0.03 0.31 10.34 101.05 1.04 1.36 16 24 C -0.17 -1.93 4.25 -26.58 -0.11 -2.05 16 25 C 0.07 0.65 6.69 37.21 0.25 0.90 16 26 O -0.38 -4.17 10.77 -35.23 -0.38 -4.55 16 27 C 0.07 0.62 6.69 37.20 0.25 0.87 16 28 C -0.15 -1.58 4.71 -26.59 -0.13 -1.71 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.66 5.24 -51.92 -0.27 0.39 16 32 H 0.10 1.14 6.73 -51.93 -0.35 0.79 16 33 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.98 5.82 -51.93 -0.30 1.68 16 36 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 37 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.00 -0.02 7.22 -51.93 -0.38 -0.40 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.53 6.41 -51.93 -0.33 0.20 16 43 H 0.04 0.68 7.09 -51.93 -0.37 0.32 16 44 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 45 H 0.09 1.03 6.45 -51.93 -0.34 0.69 16 46 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.90 4.41 -51.93 -0.23 0.67 16 51 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -30.91 387.63 -8.21 -39.12 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.22 Total: 2.28 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.37 Total: 1.57 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.23 Total: -55.06 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.66 Total: -9.28 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.91 -8.21 -39.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.304 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds