Wall clock time and date at job start Tue Mar 31 2020 21:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47429 * 2 1 4 4 C 1.36451 * 127.13369 * 90.60790 * 3 2 1 5 5 N 1.38573 * 126.47828 * 359.94822 * 4 3 2 6 6 C 1.46898 * 111.00095 * 243.53362 * 5 4 3 7 7 C 1.46892 * 111.00320 * 119.57433 * 5 4 3 8 8 H 1.08997 * 109.47068 * 59.99983 * 7 5 4 9 9 C 1.53005 * 109.47086 * 300.00139 * 7 5 4 10 10 C 1.50698 * 109.47371 * 180.02562 * 7 5 4 11 11 H 1.08002 * 119.99791 * 0.02562 * 10 7 5 12 12 C 1.37878 * 120.00407 * 179.97438 * 10 7 5 13 13 N 1.31519 * 119.99907 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00427 * 180.02562 * 12 10 7 15 15 H 1.48508 * 109.46845 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47319 * 119.99984 * 14 12 10 17 17 H 1.48500 * 109.46972 * 240.00366 * 14 12 10 18 18 N 1.31222 * 107.05090 * 179.97438 * 4 3 2 19 19 N 1.28529 * 109.86088 * 359.97438 * 18 4 3 20 20 C 1.30291 * 110.05324 * 0.02562 * 19 18 4 21 21 C 1.50700 * 126.34801 * 179.97438 * 20 19 18 22 22 O 1.42904 * 109.54545 * 125.25719 * 21 20 19 23 23 C 1.42899 * 113.99697 * 302.38728 * 22 21 20 24 24 C 1.53183 * 109.54434 * 5.08136 * 21 20 19 25 25 C 1.53104 * 109.15584 * 183.24072 * 24 21 20 26 26 O 1.42902 * 109.48754 * 57.47614 * 25 24 21 27 27 C 1.42897 * 114.09681 * 298.88476 * 26 25 24 28 28 C 1.53091 * 109.41653 * 61.16240 * 27 26 25 29 29 H 1.08990 * 109.47417 * 173.60071 * 1 2 3 30 30 H 1.09000 * 109.47268 * 293.61077 * 1 2 3 31 31 H 1.09008 * 109.46730 * 53.60257 * 1 2 3 32 32 H 1.08998 * 109.47176 * 240.00028 * 2 1 3 33 33 H 1.08998 * 109.46836 * 120.00190 * 2 1 3 34 34 H 1.08999 * 109.47218 * 72.70368 * 6 5 4 35 35 H 1.08996 * 109.47017 * 192.71134 * 6 5 4 36 36 H 1.09006 * 109.47091 * 312.70751 * 6 5 4 37 37 H 1.09003 * 109.46844 * 179.97438 * 9 7 5 38 38 H 1.08997 * 109.47039 * 299.99861 * 9 7 5 39 39 H 1.08993 * 109.46740 * 60.00053 * 9 7 5 40 40 H 0.96996 * 119.99765 * 179.97438 * 13 12 10 41 41 H 1.09000 * 109.47021 * 180.08570 * 23 22 21 42 42 H 1.08998 * 109.46943 * 300.08256 * 23 22 21 43 43 H 1.08997 * 109.47457 * 60.08623 * 23 22 21 44 44 H 1.09000 * 109.51975 * 303.05797 * 24 21 20 45 45 H 1.08995 * 109.51850 * 63.24376 * 24 21 20 46 46 H 1.08998 * 109.40848 * 297.49227 * 25 24 21 47 47 H 1.08997 * 109.48680 * 177.50835 * 25 24 21 48 48 H 1.09001 * 109.48200 * 301.17611 * 27 26 25 49 49 H 1.09002 * 109.49244 * 181.14838 * 27 26 25 50 50 H 1.09007 * 109.52594 * 182.48933 * 28 27 26 51 51 H 1.08996 * 109.52591 * 62.29392 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3039 2.1540 1.0878 5 7 2.1859 1.7810 2.4171 6 6 1.1815 2.6015 3.1070 7 6 3.4839 1.8523 3.1011 8 1 3.8623 2.8735 3.0570 9 6 4.4751 0.9110 2.4136 10 6 3.3164 1.4399 4.5409 11 1 2.3430 1.1532 4.9107 12 6 4.4058 1.4278 5.3859 13 7 5.5915 1.7755 4.9352 14 14 4.1983 0.9160 7.1703 15 1 2.7758 0.5738 7.4249 16 1 5.0502 -0.2683 7.4480 17 1 4.6036 2.0362 8.0569 18 7 2.7108 3.3173 0.6372 19 7 2.6971 3.3168 -0.6480 20 6 2.2837 2.1630 -1.0900 21 6 2.1265 1.7642 -2.5347 22 8 2.8665 0.5672 -2.7835 23 6 4.2589 0.6709 -2.4789 24 6 2.6499 2.8867 -3.4361 25 6 2.4122 2.5075 -4.9003 26 8 1.0192 2.2678 -5.1106 27 6 0.4870 1.1965 -4.3290 28 6 0.6452 1.5239 -2.8419 29 1 -0.3634 -1.0211 -0.1145 30 1 -0.3634 0.4116 0.9416 31 1 -0.3633 0.6099 -0.8273 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.1848 2.3107 2.7753 35 1 1.2652 2.4496 4.1830 36 1 1.3494 3.6531 2.8743 37 1 5.4384 0.9642 2.9210 38 1 4.0967 -0.1103 2.4578 39 1 4.5963 1.2088 1.3722 40 1 6.3578 1.7673 5.5297 41 1 4.7499 -0.2777 -2.6962 42 1 4.7057 1.4586 -3.0854 43 1 4.3830 0.9107 -1.4229 44 1 2.1201 3.8121 -3.2102 45 1 3.7170 3.0253 -3.2629 46 1 2.9760 1.6051 -5.1368 47 1 2.7423 3.3219 -5.5451 48 1 1.0256 0.2769 -4.5580 49 1 -0.5698 1.0663 -4.5621 50 1 0.2801 0.6887 -2.2441 51 1 0.0737 2.4209 -2.6036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597294419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:55 Heat of formation + Delta-G solvation = -10.642406 kcal Electronic energy + Delta-G solvation = -32566.013815 eV Core-core repulsion = 28502.194297 eV Total energy + Delta-G solvation = -4063.819518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.16406 -41.04389 -38.84404 -38.27122 -36.66191 -34.97602 -33.98999 -32.30308 -31.56068 -31.48646 -30.50033 -27.98690 -27.68743 -26.36241 -25.84191 -24.96625 -24.67584 -23.43232 -22.34972 -21.13876 -20.76830 -18.55828 -18.39450 -17.94267 -17.49804 -17.15022 -16.94864 -16.84623 -16.67607 -16.25863 -16.16506 -15.69780 -15.42968 -15.10772 -14.94855 -14.33321 -14.22518 -14.08329 -14.01020 -13.80176 -13.72041 -13.56490 -13.07801 -13.04064 -12.89403 -12.72249 -12.69074 -12.59625 -12.46041 -12.30959 -12.23679 -12.18313 -12.08067 -11.81809 -11.54203 -11.40511 -11.16477 -11.07884 -10.93523 -10.62114 -10.54684 -10.08281 -9.58553 -8.17652 -6.31890 0.65733 1.26113 1.43342 1.45241 1.57088 1.69421 2.39509 2.46661 2.83782 2.97531 3.08761 3.14811 3.46453 3.61762 3.69598 3.92068 4.03498 4.06553 4.23416 4.24037 4.25753 4.28529 4.34119 4.38373 4.43569 4.50766 4.55671 4.59009 4.64157 4.67545 4.71093 4.73906 4.78398 4.80761 4.82326 4.90360 4.94840 5.00921 5.05219 5.11142 5.15298 5.23824 5.33043 5.50352 5.59499 5.80656 5.85817 5.93339 6.10578 6.23931 6.57782 6.78781 7.37411 7.67161 8.89787 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.003267 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.569427 B = 8568.417937 C = 8860.816938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.448 5.448 4 C 0.370 3.630 5 N -0.464 5.464 6 C 0.046 3.954 7 C 0.235 3.765 8 H -0.031 1.031 9 C -0.108 4.108 10 C -0.521 4.521 11 H 0.075 0.925 12 C 0.014 3.986 13 N -0.921 5.921 14 Si 0.970 3.030 15 H -0.259 1.259 16 H -0.280 1.280 17 H -0.284 1.284 18 N -0.363 5.363 19 N -0.310 5.310 20 C 0.149 3.851 21 C 0.214 3.786 22 O -0.362 6.362 23 C 0.027 3.973 24 C -0.163 4.163 25 C 0.072 3.928 26 O -0.395 6.395 27 C 0.069 3.931 28 C -0.147 4.147 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.016 0.984 37 H 0.067 0.933 38 H 0.040 0.960 39 H -0.004 1.004 40 H 0.263 0.737 41 H 0.117 0.883 42 H 0.059 0.941 43 H 0.008 0.992 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.113 0.887 48 H 0.070 0.930 49 H 0.120 0.880 50 H 0.104 0.896 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 -6.882 -18.835 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.140 5.140 4 C 0.012 3.988 5 N -0.190 5.190 6 C -0.101 4.101 7 C 0.129 3.871 8 H -0.013 1.013 9 C -0.166 4.166 10 C -0.560 4.560 11 H 0.093 0.907 12 C -0.186 4.186 13 N -0.560 5.560 14 Si 0.795 3.205 15 H -0.183 1.183 16 H -0.206 1.206 17 H -0.210 1.210 18 N -0.207 5.207 19 N -0.151 5.151 20 C -0.120 4.120 21 C 0.172 3.828 22 O -0.279 6.279 23 C -0.069 4.069 24 C -0.202 4.202 25 C -0.005 4.005 26 O -0.314 6.314 27 C -0.008 4.008 28 C -0.185 4.185 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.035 0.965 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.078 0.922 43 H 0.026 0.974 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.131 0.869 48 H 0.088 0.912 49 H 0.138 0.862 50 H 0.122 0.878 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.181 -6.049 -18.955 22.350 hybrid contribution 0.858 -0.120 1.887 2.076 sum -9.323 -6.168 -17.068 20.403 Atomic orbital electron populations 1.22301 0.91931 1.05187 1.02769 1.22200 0.97391 0.77274 1.05542 1.46561 1.48276 1.14474 1.04644 1.22755 0.99156 0.87018 0.89864 1.59171 1.12018 1.53000 0.94861 1.22334 0.93458 0.93619 1.00726 1.19079 0.82303 0.92974 0.92699 1.01305 1.21535 1.01757 0.98456 0.94901 1.21345 0.95593 1.45663 0.93358 0.90652 1.25783 0.94636 0.94918 1.03244 1.70055 1.00248 1.48623 1.37099 0.85324 0.78790 0.77602 0.78818 1.18276 1.20583 1.21040 1.74585 1.22072 1.20103 1.03897 1.73837 1.18688 1.19507 1.03113 1.25759 1.03953 0.89316 0.92973 1.19871 0.94719 0.86480 0.81753 1.87923 1.20571 1.33544 1.85902 1.22885 0.81422 1.04432 0.98183 1.22571 1.02908 0.98098 0.96617 1.22588 0.82361 1.02184 0.93329 1.87914 1.24488 1.54307 1.64691 1.22666 1.01132 0.89851 0.87125 1.22580 0.90800 1.04541 1.00568 0.87186 0.92937 0.90917 0.86687 0.89205 0.90458 0.89030 0.96477 0.91444 0.94064 0.98518 0.92740 0.86507 0.92202 0.97361 0.90343 0.90302 0.91499 0.86917 0.91160 0.86243 0.87761 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.78 71.98 0.70 -2.39 16 2 C 0.10 2.44 6.19 86.38 0.53 2.98 16 3 N -0.45 -15.00 2.81 -514.86 -1.45 -16.45 16 4 C 0.37 15.64 5.03 260.12 1.31 16.95 16 5 N -0.46 -20.46 4.66 -711.03 -3.31 -23.77 16 6 C 0.05 1.84 9.53 127.69 1.22 3.06 16 7 C 0.24 12.32 2.00 44.17 0.09 12.41 16 8 H -0.03 -1.90 8.10 -2.39 -0.02 -1.92 16 9 C -0.11 -5.53 8.84 71.98 0.64 -4.89 16 10 C -0.52 -27.74 7.70 25.60 0.20 -27.55 16 11 H 0.08 3.83 6.54 -2.91 -0.02 3.81 16 12 C 0.01 0.73 5.30 84.65 0.45 1.18 16 13 N -0.92 -53.03 11.32 21.45 0.24 -52.78 16 14 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 N -0.36 -17.03 11.96 -58.01 -0.69 -17.72 16 19 N -0.31 -12.72 11.48 -49.54 -0.57 -13.29 16 20 C 0.15 4.88 5.06 137.64 0.70 5.58 16 21 C 0.21 5.06 0.41 -11.42 0.00 5.06 16 22 O -0.36 -7.79 7.98 -148.98 -1.19 -8.98 16 23 C 0.03 0.60 10.34 113.37 1.17 1.77 16 24 C -0.16 -3.68 4.25 30.69 0.13 -3.55 16 25 C 0.07 1.23 6.69 72.02 0.48 1.72 16 26 O -0.40 -7.51 10.77 -148.98 -1.60 -9.11 16 27 C 0.07 1.02 6.69 72.01 0.48 1.50 16 28 C -0.15 -2.72 4.71 30.69 0.14 -2.58 16 29 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.26 5.24 -2.38 -0.01 1.25 16 32 H 0.12 2.43 6.73 -2.39 -0.02 2.42 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.09 3.75 5.82 -2.39 -0.01 3.73 16 36 H 0.02 0.71 7.86 -2.38 -0.02 0.69 16 37 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.00 -0.21 7.22 -2.39 -0.02 -0.23 16 40 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 1.21 6.41 -2.39 -0.02 1.20 16 43 H 0.01 0.23 7.09 -2.39 -0.02 0.22 16 44 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 45 H 0.08 1.87 6.45 -2.39 -0.02 1.85 16 46 H 0.07 1.02 7.82 -2.39 -0.02 1.00 16 47 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.07 0.95 7.82 -2.39 -0.02 0.94 16 49 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.10 1.67 4.41 -2.38 -0.01 1.66 16 51 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -70.21 387.63 2.62 -67.59 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.93 Total: 19.00 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 8.24 Total: 11.25 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -5.78 Total: -124.01 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -2.79 Total: -18.09 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -70.21 2.62 -67.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597294419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.943 kcal (2) G-P(sol) polarization free energy of solvation -70.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds