Wall clock time and date at job start Tue Mar 31 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47384 * 2 1 4 4 C 1.36736 * 127.13280 * 274.51546 * 3 2 1 5 5 C 1.50696 * 126.35079 * 359.95839 * 4 3 2 6 6 H 1.09002 * 110.33266 * 15.99459 * 5 4 3 7 7 C 1.54484 * 110.37572 * 253.74009 * 5 4 3 8 8 C 1.54504 * 104.06269 * 217.18937 * 7 5 4 9 9 C 1.54479 * 104.06569 * 0.02562 * 8 7 5 10 10 H 1.09004 * 110.37281 * 265.03842 * 9 8 7 11 11 C 1.52998 * 110.37470 * 142.81274 * 9 8 7 12 12 O 1.44425 * 110.37324 * 138.24054 * 5 4 3 13 13 N 1.30295 * 107.30189 * 180.22809 * 4 3 2 14 14 N 1.28524 * 110.05741 * 359.77094 * 13 4 3 15 15 C 1.31218 * 109.85514 * 0.02562 * 14 13 4 16 16 N 1.38587 * 126.47122 * 179.97438 * 15 14 13 17 17 C 1.46897 * 111.00095 * 251.56196 * 16 15 14 18 18 C 1.50698 * 109.46972 * 67.78620 * 17 16 15 19 19 H 1.08005 * 120.00390 * 3.79315 * 18 17 16 20 20 C 1.37877 * 119.99956 * 183.79823 * 18 17 16 21 21 N 1.31519 * 120.00022 * 5.06333 * 20 18 17 22 22 Si 1.86804 * 120.00121 * 185.06993 * 20 18 17 23 23 H 1.48497 * 109.47586 * 94.99209 * 22 20 18 24 24 H 1.48503 * 109.46818 * 214.99280 * 22 20 18 25 25 H 1.48500 * 109.46971 * 334.98780 * 22 20 18 26 26 C 1.46897 * 110.99785 * 15.51791 * 16 15 14 27 27 C 1.53004 * 109.47132 * 163.40263 * 26 16 15 28 28 O 1.42905 * 109.47046 * 67.50789 * 27 26 16 29 29 C 1.42898 * 113.99737 * 184.88234 * 28 27 26 30 30 H 1.08997 * 109.47546 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47360 * 300.00410 * 1 2 3 32 32 H 1.09003 * 109.47115 * 60.00264 * 1 2 3 33 33 H 1.08997 * 109.47677 * 239.99433 * 2 1 3 34 34 H 1.09003 * 109.47115 * 119.99736 * 2 1 3 35 35 H 1.08996 * 110.50765 * 335.83576 * 7 5 4 36 36 H 1.08995 * 110.50859 * 98.40739 * 7 5 4 37 37 H 1.09004 * 110.51198 * 118.64290 * 8 7 5 38 38 H 1.09001 * 110.51322 * 241.21666 * 8 7 5 39 39 H 1.08992 * 109.47212 * 59.99812 * 11 9 8 40 40 H 1.09003 * 109.46847 * 180.02562 * 11 9 8 41 41 H 1.09004 * 109.46434 * 299.99512 * 11 9 8 42 42 H 1.09008 * 109.47044 * 187.77882 * 17 16 15 43 43 H 1.08996 * 109.47159 * 307.78526 * 17 16 15 44 44 H 0.96998 * 119.99840 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.47411 * 43.40646 * 26 16 15 46 46 H 1.08997 * 109.47348 * 283.40486 * 26 16 15 47 47 H 1.09002 * 109.47163 * 307.50972 * 27 26 16 48 48 H 1.08996 * 109.47160 * 187.50877 * 27 26 16 49 49 H 1.08997 * 109.47123 * 295.04660 * 29 28 27 50 50 H 1.08999 * 109.47295 * 55.05680 * 29 28 27 51 51 H 1.09000 * 109.46498 * 175.04914 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2126 2.1880 -1.0867 5 6 1.9633 1.8218 -2.5271 6 1 1.3430 0.9276 -2.5886 7 6 3.3022 1.5993 -3.2649 8 6 3.0534 2.1764 -4.6764 9 6 1.5939 2.6799 -4.6243 10 1 0.9159 1.9188 -5.0107 11 6 1.4488 3.9764 -5.4235 12 8 1.3336 2.9193 -3.2233 13 7 2.6587 3.3303 -0.6465 14 7 2.7541 3.3020 0.6349 15 6 2.3714 2.1302 1.0845 16 7 2.3370 1.7276 2.4102 17 6 3.3956 0.7485 2.6907 18 6 4.7406 1.4213 2.5938 19 1 4.8009 2.4837 2.4091 20 6 5.8941 0.6806 2.7410 21 7 5.8246 -0.6268 2.8663 22 14 7.5557 1.5339 2.7626 23 1 7.9627 1.7897 4.1677 24 1 8.5660 0.6669 2.1047 25 1 7.4594 2.8235 2.0326 26 6 2.4346 2.8818 3.3135 27 6 1.9859 2.4703 4.7172 28 8 2.9266 1.5449 5.2658 29 6 2.5441 1.0109 6.5348 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 4.1069 2.1405 -2.7674 36 1 3.5356 0.5361 -3.3205 37 1 3.7352 3.0030 -4.8767 38 1 3.1651 1.3989 -5.4321 39 1 1.7253 3.7957 -6.4622 40 1 0.4148 4.3183 -5.3766 41 1 2.1029 4.7389 -5.0007 42 1 3.2619 0.3466 3.6951 43 1 3.3420 -0.0626 1.9646 44 1 6.6362 -1.1478 2.9702 45 1 1.7940 3.6844 2.9481 46 1 3.4672 3.2289 3.3493 47 1 1.0041 2.0002 4.6616 48 1 1.9306 3.3529 5.3543 49 1 2.5212 1.8116 7.2741 50 1 1.5546 0.5605 6.4562 51 1 3.2647 0.2531 6.8422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599218331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:22 Heat of formation + Delta-G solvation = 3.457887 kcal Electronic energy + Delta-G solvation = -31613.999254 eV Core-core repulsion = 27550.791171 eV Total energy + Delta-G solvation = -4063.208084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30594 -39.44889 -37.89708 -36.10622 -35.20628 -32.57165 -32.38378 -32.01328 -30.24935 -29.64142 -28.68233 -26.80476 -25.76253 -25.41048 -23.84114 -22.88468 -22.42626 -21.70799 -21.09990 -19.90790 -19.63439 -16.97789 -16.65210 -16.47080 -16.13906 -15.86594 -15.50455 -15.40453 -15.06578 -14.77200 -14.33703 -14.23487 -14.08350 -13.81970 -13.48234 -13.33914 -12.83665 -12.64629 -12.47661 -12.38850 -12.11487 -11.92700 -11.73266 -11.59120 -11.44360 -11.40914 -11.05543 -11.05302 -10.96503 -10.91457 -10.76887 -10.72038 -10.63994 -10.39412 -9.95022 -9.93352 -9.85901 -9.53186 -9.44626 -9.03430 -8.61433 -8.34031 -7.36035 -6.02075 -4.04140 2.39106 2.75976 3.33450 3.39585 3.47314 3.55494 3.94612 4.39712 4.41497 4.48365 4.58828 4.64352 4.79435 4.88343 4.91057 4.98023 5.13220 5.16976 5.29828 5.33139 5.40489 5.40951 5.51375 5.57178 5.65255 5.70577 5.74254 5.77656 5.79292 5.80552 5.83604 5.91603 5.97255 6.00316 6.05937 6.08044 6.12986 6.15326 6.19174 6.40752 6.69870 6.78404 6.84455 7.05143 7.35110 7.57633 7.63011 7.79463 7.94819 8.21479 8.23712 9.00069 9.52678 9.60427 11.05750 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003886 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.957566 B = 7203.278462 C = 8310.101751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.470 5.470 4 C 0.146 3.854 5 C 0.180 3.820 6 H 0.079 0.921 7 C -0.145 4.145 8 C -0.147 4.147 9 C 0.068 3.932 10 H 0.068 0.932 11 C -0.145 4.145 12 O -0.348 6.348 13 N -0.260 5.260 14 N -0.337 5.337 15 C 0.414 3.586 16 N -0.465 5.465 17 C 0.187 3.813 18 C -0.533 4.533 19 H 0.065 0.935 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.886 3.114 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.273 1.273 26 C 0.072 3.928 27 C 0.070 3.930 28 O -0.355 6.355 29 C 0.031 3.969 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.027 0.973 44 H 0.260 0.740 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.030 0.970 50 H 0.033 0.967 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.480 -0.327 -8.936 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.166 5.166 4 C -0.121 4.121 5 C 0.119 3.881 6 H 0.097 0.903 7 C -0.184 4.184 8 C -0.185 4.185 9 C 0.011 3.989 10 H 0.086 0.914 11 C -0.203 4.203 12 O -0.266 6.266 13 N -0.100 5.100 14 N -0.182 5.182 15 C 0.059 3.941 16 N -0.189 5.189 17 C 0.064 3.936 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.132 4.132 21 N -0.534 5.534 22 Si 0.715 3.285 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.198 1.198 26 C -0.056 4.056 27 C -0.007 4.007 28 O -0.273 6.273 29 C -0.066 4.066 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.048 0.952 50 H 0.051 0.949 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.268 0.812 -8.803 14.322 hybrid contribution 1.135 -0.931 0.146 1.476 sum -10.132 -0.119 -8.657 13.327 Atomic orbital electron populations 1.22118 0.94330 1.02736 1.03013 1.21856 0.95215 0.79628 1.05138 1.45909 1.51339 1.13471 1.05884 1.23632 1.08432 0.89904 0.90148 1.20670 0.93622 0.89526 0.84252 0.90315 1.22972 0.97951 1.02255 0.95184 1.22984 0.97133 1.01395 0.96988 1.22998 0.95233 0.97791 0.82924 0.91420 1.21786 1.02946 0.96638 0.98886 1.89276 1.75149 1.45381 1.16842 1.73823 1.14837 1.17739 1.03651 1.74673 1.22337 1.18581 1.02583 1.22686 0.95465 0.87769 0.88219 1.59522 1.48650 1.15283 0.95460 1.20242 0.85399 0.88743 0.99215 1.21621 0.91272 0.95306 1.49023 0.91742 1.24800 0.98895 0.94600 0.94901 1.69935 1.28396 1.04791 1.50283 0.86648 0.83937 0.79767 0.78191 1.20557 1.21458 1.19787 1.21991 1.03590 0.90803 0.89175 1.22493 0.92302 0.92059 0.93880 1.88320 1.45145 1.60439 1.33367 1.22655 0.99816 0.97871 0.86272 0.90718 0.91408 0.92446 0.89806 0.87435 0.89464 0.90157 0.90200 0.90516 0.91265 0.91966 0.91387 0.90758 0.95553 0.93062 0.90396 0.90101 0.93522 0.93474 0.95179 0.94862 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.24 37.15 0.38 -1.60 16 2 C 0.10 1.57 6.33 -4.05 -0.03 1.55 16 3 N -0.47 -9.01 2.81 -114.09 -0.32 -9.33 16 4 C 0.15 2.82 6.90 -154.02 -1.06 1.76 16 5 C 0.18 2.67 3.62 -27.11 -0.10 2.57 16 6 H 0.08 0.97 7.50 -51.93 -0.39 0.58 16 7 C -0.14 -1.91 6.62 -25.16 -0.17 -2.07 16 8 C -0.15 -1.52 6.63 -25.17 -0.17 -1.69 16 9 C 0.07 0.74 3.92 -25.96 -0.10 0.64 16 10 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 11 C -0.15 -1.36 9.52 37.16 0.35 -1.01 16 12 O -0.35 -5.33 11.03 -35.23 -0.39 -5.72 16 13 N -0.26 -5.92 12.18 32.99 0.40 -5.52 16 14 N -0.34 -8.05 11.28 30.31 0.34 -7.71 16 15 C 0.41 9.17 6.18 -318.87 -1.97 7.20 16 16 N -0.46 -10.00 4.68 -175.88 -0.82 -10.83 16 17 C 0.19 4.62 4.43 -4.98 -0.02 4.59 16 18 C -0.53 -14.75 7.74 -34.44 -0.27 -15.01 16 19 H 0.06 1.88 6.27 -52.48 -0.33 1.55 16 20 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 21 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 22 Si 0.89 22.35 29.54 -169.99 -5.02 17.32 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.07 1.45 4.81 -3.82 -0.02 1.43 16 27 C 0.07 1.20 6.22 37.16 0.23 1.43 16 28 O -0.35 -6.97 7.80 -35.23 -0.27 -7.25 16 29 C 0.03 0.46 11.01 101.05 1.11 1.58 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.06 7.78 -51.93 -0.40 0.66 16 34 H 0.11 1.79 6.06 -51.93 -0.31 1.48 16 35 H 0.09 1.39 7.86 -51.93 -0.41 0.98 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.93 5.64 -51.92 -0.29 1.63 16 43 H 0.03 0.69 6.08 -51.93 -0.32 0.37 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 46 H 0.08 1.87 5.82 -51.93 -0.30 1.57 16 47 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 51 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 404.45 15.07 6.09 6.09 Total: -1.00 -34.02 404.45 -9.79 -43.81 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.62 Total: 0.95 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.92 Total: 3.24 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.34 Total: -58.45 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.66 Total: -12.97 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.02 -9.79 -43.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599218331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.267 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds