Wall clock time and date at job start Tue Mar 31 2020 21:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47350 * 239.99967 * 2 1 3 5 5 O 1.21278 * 120.00306 * 253.92960 * 4 2 1 6 6 N 1.34780 * 119.99630 * 73.91774 * 4 2 1 7 7 C 1.46494 * 120.00319 * 3.71022 * 6 4 2 8 8 C 1.46502 * 119.99681 * 183.69861 * 6 4 2 9 9 C 1.50708 * 109.46602 * 90.00747 * 8 6 4 10 10 H 1.07996 * 120.00048 * 359.97438 * 9 8 6 11 11 C 1.37883 * 119.99643 * 179.97438 * 9 8 6 12 12 N 1.31517 * 120.00169 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99723 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47252 * 90.00100 * 13 11 9 15 15 H 1.48498 * 109.47048 * 210.00114 * 13 11 9 16 16 H 1.48498 * 109.47410 * 330.00034 * 13 11 9 17 17 N 1.46507 * 109.47401 * 120.00275 * 2 1 3 18 18 C 1.35309 * 125.86524 * 34.99234 * 17 2 1 19 19 C 1.35349 * 106.17409 * 179.97438 * 18 17 2 20 20 C 1.50704 * 126.75487 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47195 * 124.99970 * 20 19 18 22 22 H 1.08998 * 109.47440 * 305.00169 * 21 20 19 23 23 O 1.42904 * 109.46801 * 65.00330 * 21 20 19 24 24 C 1.53002 * 109.47260 * 185.00210 * 21 20 19 25 25 C 1.53001 * 109.46844 * 300.00464 * 24 21 20 26 26 C 1.52997 * 109.46854 * 60.00007 * 24 21 20 27 27 C 1.52993 * 109.47420 * 180.02562 * 24 21 20 28 28 N 1.33777 * 106.49700 * 0.26837 * 19 18 17 29 29 N 1.28638 * 108.88275 * 359.56015 * 28 19 18 30 30 H 1.09000 * 109.46988 * 55.78354 * 1 2 3 31 31 H 1.09003 * 109.46983 * 175.78007 * 1 2 3 32 32 H 1.08997 * 109.47329 * 295.78001 * 1 2 3 33 33 H 1.09003 * 109.47394 * 84.68624 * 7 6 4 34 34 H 1.09000 * 109.47069 * 204.69175 * 7 6 4 35 35 H 1.09007 * 109.46764 * 324.68847 * 7 6 4 36 36 H 1.09000 * 109.47191 * 210.00213 * 8 6 4 37 37 H 1.08995 * 109.47752 * 330.00878 * 8 6 4 38 38 H 0.96996 * 119.99546 * 180.02562 * 12 11 9 39 39 H 1.08005 * 126.91549 * 0.02931 * 18 17 2 40 40 H 1.09007 * 109.46916 * 5.00244 * 20 19 18 41 41 H 1.08996 * 109.47034 * 245.00982 * 20 19 18 42 42 H 0.96705 * 113.99942 * 59.99841 * 23 21 20 43 43 H 1.09002 * 109.47557 * 59.99843 * 25 24 21 44 44 H 1.09004 * 109.47166 * 180.02562 * 25 24 21 45 45 H 1.08997 * 109.47029 * 299.99562 * 25 24 21 46 46 H 1.08998 * 109.47136 * 60.00476 * 26 24 21 47 47 H 1.09004 * 109.47308 * 180.02562 * 26 24 21 48 48 H 1.08999 * 109.47561 * 300.00440 * 26 24 21 49 49 H 1.09006 * 109.47473 * 59.99802 * 27 24 21 50 50 H 1.08992 * 109.47362 * 180.02562 * 27 24 21 51 51 H 1.08999 * 109.47434 * 300.00251 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5086 -1.8218 -1.1370 6 7 1.9521 -0.1106 -2.4348 7 6 1.4521 1.2625 -2.5374 8 6 2.3653 -0.8319 -3.6412 9 6 1.1839 -1.5728 -4.2127 10 1 0.2218 -1.5128 -3.7257 11 6 1.3314 -2.3273 -5.3573 12 7 2.5029 -2.3999 -5.9506 13 14 -0.1327 -3.2463 -6.0653 14 1 -0.8456 -2.3724 -7.0313 15 1 0.3402 -4.4702 -6.7605 16 1 -1.0567 -3.6268 -4.9668 17 7 2.0184 -0.6907 1.1962 18 6 1.4358 -1.7587 1.7883 19 6 2.2132 -2.0711 2.8514 20 6 1.9889 -3.1911 3.8345 21 6 3.2369 -4.0741 3.8949 22 1 3.4864 -4.4198 2.8918 23 8 4.3290 -3.3196 4.4242 24 6 2.9654 -5.2797 4.7970 25 6 2.6151 -4.7945 6.2051 26 6 1.7960 -6.0875 4.2304 27 6 4.2135 -6.1624 4.8580 28 7 3.2169 -1.1867 2.8609 29 7 3.0757 -0.3860 1.8641 30 1 -0.3633 0.5779 -0.8498 31 1 -0.3633 -1.0249 -0.0756 32 1 -0.3634 0.4469 0.9253 33 1 2.2686 1.9612 -2.3550 34 1 1.0482 1.4284 -3.5361 35 1 0.6673 1.4196 -1.7974 36 1 2.7401 -0.1219 -4.3785 37 1 3.1521 -1.5425 -3.3882 38 1 2.6065 -2.9304 -6.7560 39 1 0.5326 -2.2615 1.4752 40 1 1.1356 -3.7894 3.5151 41 1 1.7908 -2.7737 4.8217 42 1 4.1764 -2.9797 5.3165 43 1 1.7260 -4.1654 6.1620 44 1 2.4221 -5.6534 6.8479 45 1 3.4481 -4.2190 6.6087 46 1 2.0455 -6.4332 3.2272 47 1 1.6022 -6.9462 4.8732 48 1 0.9069 -5.4584 4.1872 49 1 5.0464 -5.5867 5.2619 50 1 4.0199 -7.0215 5.5002 51 1 4.4635 -6.5081 3.8550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603188419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:13 Heat of formation + Delta-G solvation = 5.946751 kcal Electronic energy + Delta-G solvation = -30438.616895 eV Core-core repulsion = 26375.516737 eV Total energy + Delta-G solvation = -4063.100159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.07241 -39.50156 -39.17711 -35.28431 -35.06597 -34.69714 -32.84733 -32.54200 -30.61663 -28.88369 -27.89997 -27.60849 -27.16658 -26.30345 -24.90434 -23.97954 -23.26696 -21.39072 -20.98775 -19.22934 -19.00690 -17.23732 -17.01722 -16.64968 -16.37737 -15.77821 -15.46827 -15.14875 -15.00351 -14.85076 -14.63419 -14.46821 -14.07495 -13.98030 -13.68851 -13.15603 -13.13672 -12.62829 -12.54597 -12.36197 -12.27131 -12.23528 -12.15687 -12.05647 -11.86409 -11.76824 -11.68980 -11.37454 -11.30281 -11.26851 -11.00506 -10.97844 -10.70172 -10.67013 -10.47841 -10.28500 -10.12976 -9.77641 -9.75923 -9.14700 -8.79077 -8.54448 -7.87983 -6.15145 -4.21370 1.79916 2.40304 2.78007 3.00084 3.22024 3.29581 3.32254 3.68044 4.26754 4.32820 4.35271 4.49165 4.57636 4.60486 4.66179 4.70281 4.77077 5.00572 5.01586 5.12303 5.17985 5.19418 5.30637 5.32983 5.36742 5.44468 5.47142 5.52554 5.55053 5.61458 5.70148 5.72184 5.73276 5.78085 5.83735 5.90249 5.98515 6.02348 6.09874 6.17287 6.25544 6.39021 6.69814 6.88716 7.27477 7.33687 7.75635 7.79195 8.08195 8.11823 8.64945 8.79871 8.84335 9.43969 10.93082 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.002786 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.664081 B =10049.102048 C =11269.062226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 H 0.129 0.871 4 C 0.498 3.502 5 O -0.522 6.522 6 N -0.591 5.591 7 C 0.069 3.931 8 C 0.245 3.755 9 C -0.532 4.532 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.900 3.100 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.274 1.274 17 N -0.269 5.269 18 C -0.026 4.026 19 C -0.029 4.029 20 C -0.063 4.063 21 C 0.124 3.876 22 H 0.097 0.903 23 O -0.540 6.540 24 C -0.101 4.101 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.137 4.137 28 N -0.245 5.245 29 N -0.089 5.089 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.265 0.735 39 H 0.182 0.818 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.366 0.634 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.051 0.949 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 1.195 20.896 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 H 0.147 0.853 4 C 0.281 3.719 5 O -0.398 6.398 6 N -0.323 5.323 7 C -0.074 4.074 8 C 0.126 3.874 9 C -0.570 4.570 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.727 3.273 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.061 5.061 18 C -0.178 4.178 19 C -0.167 4.167 20 C -0.103 4.103 21 C 0.064 3.936 22 H 0.115 0.885 23 O -0.344 6.344 24 C -0.101 4.101 25 C -0.206 4.206 26 C -0.203 4.203 27 C -0.194 4.194 28 N -0.112 5.112 29 N -0.068 5.068 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.199 0.801 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.213 0.787 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.289 1.360 20.249 20.743 hybrid contribution -2.094 -1.033 -0.454 2.379 sum -6.383 0.327 19.795 20.801 Atomic orbital electron populations 1.22203 0.90056 1.05088 1.04552 1.21656 0.97190 0.97837 0.81857 0.85326 1.20007 0.80831 0.86844 0.84191 1.90757 1.44568 1.19189 1.85245 1.48098 1.62513 1.14177 1.07561 1.21929 0.98472 0.83247 1.03793 1.19400 0.96543 0.92120 0.79294 1.21370 0.95835 1.30007 1.09816 0.92391 1.24950 0.96141 0.96274 0.96686 1.69930 1.22731 1.40576 1.19759 0.86473 0.82334 0.79406 0.79061 1.20543 1.20996 1.19898 1.46863 1.17404 1.21769 1.20081 1.23180 1.03523 0.93976 0.97072 1.21631 0.94927 1.00777 0.99380 1.20704 0.99689 0.92879 0.96982 1.21850 0.85913 0.88595 0.97234 0.88477 1.86706 1.40423 1.72051 1.35245 1.21250 0.96481 0.96377 0.96029 1.21955 1.01478 1.01407 0.95730 1.21937 0.97402 0.99750 1.01238 1.21774 0.96994 0.98733 1.01902 1.75060 1.19986 1.03222 1.12943 1.78292 1.03682 1.22086 1.02740 0.88285 0.90405 0.90431 0.93118 0.89835 0.92123 0.94519 0.93654 0.92531 0.80090 0.89267 0.90062 0.78733 0.92195 0.92406 0.92414 0.92206 0.92517 0.92127 0.91930 0.93018 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.47 37.16 0.31 -1.40 16 2 C 0.12 1.76 2.82 -69.08 -0.19 1.57 16 3 H 0.13 1.58 7.48 -51.93 -0.39 1.19 16 4 C 0.50 9.97 6.97 -10.98 -0.08 9.90 16 5 O -0.52 -13.11 15.88 5.56 0.09 -13.02 16 6 N -0.59 -11.78 2.86 -182.95 -0.52 -12.30 16 7 C 0.07 0.96 9.86 59.84 0.59 1.55 16 8 C 0.25 6.20 5.17 -5.19 -0.03 6.17 16 9 C -0.53 -14.39 9.39 -34.43 -0.32 -14.72 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 13 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 17 N -0.27 -4.40 2.85 -55.89 -0.16 -4.55 16 18 C -0.03 -0.38 10.41 -17.05 -0.18 -0.56 16 19 C -0.03 -0.43 6.46 -82.77 -0.53 -0.96 16 20 C -0.06 -0.66 4.75 -27.88 -0.13 -0.79 16 21 C 0.12 1.38 2.28 -26.73 -0.06 1.32 16 22 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 23 O -0.54 -6.84 11.81 -35.23 -0.42 -7.25 16 24 C -0.10 -0.85 0.63 -154.51 -0.10 -0.95 16 25 C -0.15 -1.00 7.81 37.16 0.29 -0.71 16 26 C -0.15 -1.14 8.13 37.16 0.30 -0.84 16 27 C -0.14 -1.23 8.33 37.15 0.31 -0.92 16 28 N -0.25 -4.35 11.71 33.29 0.39 -3.96 16 29 N -0.09 -1.65 13.17 60.35 0.79 -0.85 16 30 H 0.10 0.93 5.80 -51.93 -0.30 0.63 16 31 H 0.08 0.89 7.40 -51.93 -0.38 0.50 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 35 H 0.06 0.63 4.56 -51.93 -0.24 0.40 16 36 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.18 2.14 7.42 -52.48 -0.39 1.75 16 40 H 0.09 0.77 6.16 -51.93 -0.32 0.45 16 41 H 0.08 0.71 6.71 -51.93 -0.35 0.37 16 42 H 0.37 3.45 7.33 45.56 0.33 3.78 16 43 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.37 6.78 -51.93 -0.35 0.01 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.42 6.32 -51.93 -0.33 0.09 16 49 H 0.06 0.59 7.68 -51.93 -0.40 0.20 16 50 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -36.23 404.27 -5.53 -41.76 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.60 Total: 2.98 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 0.08 Total: 0.29 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 1.24 Total: -46.91 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.33 Total: -20.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.23 -5.53 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.707 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds