Wall clock time and date at job start Tue Mar 31 2020 21:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47350 * 239.99967 * 2 1 3 5 5 O 1.21278 * 120.00306 * 253.92960 * 4 2 1 6 6 N 1.34780 * 119.99630 * 73.91774 * 4 2 1 7 7 C 1.46494 * 120.00319 * 3.71022 * 6 4 2 8 8 C 1.46502 * 119.99681 * 183.69861 * 6 4 2 9 9 C 1.50708 * 109.46602 * 90.00747 * 8 6 4 10 10 H 1.07996 * 120.00048 * 359.97438 * 9 8 6 11 11 C 1.37883 * 119.99643 * 179.97438 * 9 8 6 12 12 N 1.31517 * 120.00169 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99723 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47252 * 90.00100 * 13 11 9 15 15 H 1.48498 * 109.47048 * 210.00114 * 13 11 9 16 16 H 1.48498 * 109.47410 * 330.00034 * 13 11 9 17 17 N 1.46507 * 109.47401 * 120.00275 * 2 1 3 18 18 C 1.35309 * 125.86524 * 34.99234 * 17 2 1 19 19 C 1.35349 * 106.17409 * 179.97438 * 18 17 2 20 20 C 1.50704 * 126.75487 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47195 * 124.99970 * 20 19 18 22 22 H 1.08998 * 109.47440 * 305.00169 * 21 20 19 23 23 O 1.42904 * 109.46801 * 65.00330 * 21 20 19 24 24 C 1.53002 * 109.47260 * 185.00210 * 21 20 19 25 25 C 1.53001 * 109.46844 * 300.00464 * 24 21 20 26 26 C 1.52997 * 109.46854 * 60.00007 * 24 21 20 27 27 C 1.52993 * 109.47420 * 180.02562 * 24 21 20 28 28 N 1.33777 * 106.49700 * 0.26837 * 19 18 17 29 29 N 1.28638 * 108.88275 * 359.56015 * 28 19 18 30 30 H 1.09000 * 109.46988 * 55.78354 * 1 2 3 31 31 H 1.09003 * 109.46983 * 175.78007 * 1 2 3 32 32 H 1.08997 * 109.47329 * 295.78001 * 1 2 3 33 33 H 1.09003 * 109.47394 * 84.68624 * 7 6 4 34 34 H 1.09000 * 109.47069 * 204.69175 * 7 6 4 35 35 H 1.09007 * 109.46764 * 324.68847 * 7 6 4 36 36 H 1.09000 * 109.47191 * 210.00213 * 8 6 4 37 37 H 1.08995 * 109.47752 * 330.00878 * 8 6 4 38 38 H 0.96996 * 119.99546 * 180.02562 * 12 11 9 39 39 H 1.08005 * 126.91549 * 0.02931 * 18 17 2 40 40 H 1.09007 * 109.46916 * 5.00244 * 20 19 18 41 41 H 1.08996 * 109.47034 * 245.00982 * 20 19 18 42 42 H 0.96705 * 113.99942 * 59.99841 * 23 21 20 43 43 H 1.09002 * 109.47557 * 59.99843 * 25 24 21 44 44 H 1.09004 * 109.47166 * 180.02562 * 25 24 21 45 45 H 1.08997 * 109.47029 * 299.99562 * 25 24 21 46 46 H 1.08998 * 109.47136 * 60.00476 * 26 24 21 47 47 H 1.09004 * 109.47308 * 180.02562 * 26 24 21 48 48 H 1.08999 * 109.47561 * 300.00440 * 26 24 21 49 49 H 1.09006 * 109.47473 * 59.99802 * 27 24 21 50 50 H 1.08992 * 109.47362 * 180.02562 * 27 24 21 51 51 H 1.08999 * 109.47434 * 300.00251 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5086 -1.8218 -1.1370 6 7 1.9521 -0.1106 -2.4348 7 6 1.4521 1.2625 -2.5374 8 6 2.3653 -0.8319 -3.6412 9 6 1.1839 -1.5728 -4.2127 10 1 0.2218 -1.5128 -3.7257 11 6 1.3314 -2.3273 -5.3573 12 7 2.5029 -2.3999 -5.9506 13 14 -0.1327 -3.2463 -6.0653 14 1 -0.8456 -2.3724 -7.0313 15 1 0.3402 -4.4702 -6.7605 16 1 -1.0567 -3.6268 -4.9668 17 7 2.0184 -0.6907 1.1962 18 6 1.4358 -1.7587 1.7883 19 6 2.2132 -2.0711 2.8514 20 6 1.9889 -3.1911 3.8345 21 6 3.2369 -4.0741 3.8949 22 1 3.4864 -4.4198 2.8918 23 8 4.3290 -3.3196 4.4242 24 6 2.9654 -5.2797 4.7970 25 6 2.6151 -4.7945 6.2051 26 6 1.7960 -6.0875 4.2304 27 6 4.2135 -6.1624 4.8580 28 7 3.2169 -1.1867 2.8609 29 7 3.0757 -0.3860 1.8641 30 1 -0.3633 0.5779 -0.8498 31 1 -0.3633 -1.0249 -0.0756 32 1 -0.3634 0.4469 0.9253 33 1 2.2686 1.9612 -2.3550 34 1 1.0482 1.4284 -3.5361 35 1 0.6673 1.4196 -1.7974 36 1 2.7401 -0.1219 -4.3785 37 1 3.1521 -1.5425 -3.3882 38 1 2.6065 -2.9304 -6.7560 39 1 0.5326 -2.2615 1.4752 40 1 1.1356 -3.7894 3.5151 41 1 1.7908 -2.7737 4.8217 42 1 4.1764 -2.9797 5.3165 43 1 1.7260 -4.1654 6.1620 44 1 2.4221 -5.6534 6.8479 45 1 3.4481 -4.2190 6.6087 46 1 2.0455 -6.4332 3.2272 47 1 1.6022 -6.9462 4.8732 48 1 0.9069 -5.4584 4.1872 49 1 5.0464 -5.5867 5.2619 50 1 4.0199 -7.0215 5.5002 51 1 4.4635 -6.5081 3.8550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603188419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:12 Heat of formation + Delta-G solvation = -20.861235 kcal Electronic energy + Delta-G solvation = -30439.779377 eV Core-core repulsion = 26375.516737 eV Total energy + Delta-G solvation = -4064.262640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.27248 -40.99394 -40.04179 -36.84790 -36.43565 -35.55253 -34.75696 -33.68683 -31.85554 -29.87066 -29.69643 -28.17405 -27.86983 -27.64493 -26.21006 -25.02213 -24.92013 -22.72741 -22.14408 -20.45158 -19.96740 -18.72815 -18.45757 -18.38761 -17.32539 -17.09614 -16.75428 -16.48117 -16.28033 -16.03677 -15.86289 -15.58651 -15.08573 -14.91482 -14.69826 -14.52026 -14.27360 -14.03573 -13.66859 -13.52307 -13.40536 -13.22755 -13.10475 -13.05641 -12.96807 -12.82740 -12.80276 -12.68285 -12.53016 -12.48573 -12.34442 -12.23887 -12.06829 -11.77161 -11.72999 -11.64084 -11.47348 -11.28164 -10.67942 -10.67357 -10.63739 -9.93824 -9.57564 -8.25883 -6.41395 0.56975 1.24874 1.36460 1.39713 1.48545 1.53672 1.60068 2.19693 2.38482 3.04901 3.28766 3.32519 3.47452 3.56535 3.64372 3.74965 3.89009 4.01750 4.10588 4.12688 4.20546 4.37061 4.46484 4.51740 4.53160 4.56389 4.65294 4.67756 4.83184 4.83853 4.84718 4.89172 4.94763 4.97678 5.07978 5.09497 5.13057 5.15438 5.15974 5.19817 5.24070 5.37868 5.45895 5.53781 5.56896 5.59317 5.74088 5.98565 6.51120 6.68179 6.98470 7.11378 7.31361 7.56671 8.82047 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.002786 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.664081 B =10049.102048 C =11269.062226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.156 0.844 4 C 0.490 3.510 5 O -0.587 6.587 6 N -0.596 5.596 7 C 0.060 3.940 8 C 0.258 3.742 9 C -0.540 4.540 10 H 0.064 0.936 11 C 0.005 3.995 12 N -0.932 5.932 13 Si 0.971 3.029 14 H -0.262 1.262 15 H -0.286 1.286 16 H -0.266 1.266 17 N -0.273 5.273 18 C -0.031 4.031 19 C -0.033 4.033 20 C -0.058 4.058 21 C 0.125 3.875 22 H 0.059 0.941 23 O -0.564 6.564 24 C -0.092 4.092 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.137 4.137 28 N -0.271 5.271 29 N -0.127 5.127 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.028 0.972 37 H -0.009 1.009 38 H 0.267 0.733 39 H 0.209 0.791 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.379 0.621 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.043 0.957 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.053 0.947 50 H 0.067 0.933 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.670 1.880 22.633 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.025 3.975 3 H 0.173 0.827 4 C 0.276 3.724 5 O -0.468 6.468 6 N -0.326 5.326 7 C -0.081 4.081 8 C 0.137 3.863 9 C -0.579 4.579 10 H 0.082 0.918 11 C -0.194 4.194 12 N -0.571 5.571 13 Si 0.795 3.205 14 H -0.187 1.187 15 H -0.212 1.212 16 H -0.191 1.191 17 N -0.065 5.065 18 C -0.182 4.182 19 C -0.172 4.172 20 C -0.097 4.097 21 C 0.065 3.935 22 H 0.077 0.923 23 O -0.371 6.371 24 C -0.092 4.092 25 C -0.203 4.203 26 C -0.204 4.204 27 C -0.195 4.195 28 N -0.137 5.137 29 N -0.105 5.105 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.046 0.954 37 H 0.010 0.990 38 H 0.076 0.924 39 H 0.226 0.774 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.228 0.772 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.847 2.122 22.008 23.461 hybrid contribution -0.903 -1.247 -0.994 1.833 sum -8.750 0.874 21.014 22.780 Atomic orbital electron populations 1.22294 0.86441 1.05411 1.07087 1.21800 0.99629 0.97681 0.78424 0.82669 1.20987 0.79529 0.86309 0.85593 1.90721 1.47329 1.22282 1.86420 1.48066 1.62279 1.16109 1.06171 1.22305 1.00538 0.80023 1.05215 1.18844 0.94911 0.91328 0.81187 1.21674 0.96267 1.30077 1.09858 0.91801 1.25934 0.99084 0.97198 0.97207 1.70072 1.25110 1.41599 1.20340 0.85356 0.78671 0.77923 0.78524 1.18697 1.21224 1.19085 1.47053 1.17036 1.22295 1.20154 1.23766 1.04316 0.93468 0.96662 1.22331 0.93851 1.00873 1.00107 1.20860 0.99883 0.91705 0.97277 1.21763 0.85841 0.89781 0.96077 0.92301 1.86664 1.41481 1.72544 1.36413 1.21151 0.96404 0.94981 0.96713 1.21943 1.02084 1.02045 0.94196 1.21957 0.97455 1.00365 1.00603 1.21784 0.97230 0.99355 1.01102 1.75005 1.21204 1.04157 1.13375 1.78225 1.05003 1.23461 1.03856 0.86491 0.91146 0.87082 0.90871 0.90155 0.87755 0.95429 0.99039 0.92438 0.77378 0.86984 0.87662 0.77219 0.90977 0.91383 0.92175 0.93742 0.91241 0.90773 0.92780 0.91440 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.47 71.98 0.61 -2.10 16 2 C 0.13 3.54 2.82 44.24 0.12 3.67 16 3 H 0.16 3.35 7.48 -2.39 -0.02 3.34 16 4 C 0.49 19.72 6.97 87.66 0.61 20.34 16 5 O -0.59 -30.85 15.88 -3.02 -0.05 -30.90 16 6 N -0.60 -23.76 2.86 -851.12 -2.43 -26.19 16 7 C 0.06 1.55 9.86 127.77 1.26 2.80 16 8 C 0.26 13.63 5.17 85.64 0.44 14.07 16 9 C -0.54 -29.70 9.39 25.60 0.24 -29.46 16 10 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 11 C 0.00 0.26 5.46 84.66 0.46 0.73 16 12 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 13 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 14 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 17 N -0.27 -8.68 2.85 -330.73 -0.94 -9.62 16 18 C -0.03 -0.86 10.41 83.49 0.87 0.01 16 19 C -0.03 -0.94 6.46 41.60 0.27 -0.67 16 20 C -0.06 -1.12 4.75 29.85 0.14 -0.98 16 21 C 0.13 2.79 2.28 30.59 0.07 2.86 16 22 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 23 O -0.56 -14.53 11.81 -148.98 -1.76 -16.29 16 24 C -0.09 -1.45 0.63 -52.18 -0.03 -1.48 16 25 C -0.15 -1.59 7.81 71.98 0.56 -1.02 16 26 C -0.15 -2.05 8.13 71.98 0.59 -1.47 16 27 C -0.14 -2.45 8.33 71.98 0.60 -1.85 16 28 N -0.27 -9.68 11.71 -48.59 -0.57 -10.25 16 29 N -0.13 -4.72 13.17 37.02 0.49 -4.24 16 30 H 0.12 1.63 5.80 -2.39 -0.01 1.62 16 31 H 0.07 1.38 7.40 -2.39 -0.02 1.37 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 2.14 8.03 -2.39 -0.02 2.12 16 35 H 0.10 1.74 4.56 -2.38 -0.01 1.73 16 36 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 37 H -0.01 -0.54 7.37 -2.39 -0.02 -0.55 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.21 4.44 7.42 -2.91 -0.02 4.42 16 40 H 0.11 1.62 6.16 -2.38 -0.01 1.61 16 41 H 0.11 1.54 6.71 -2.39 -0.02 1.53 16 42 H 0.38 6.99 7.33 -74.05 -0.54 6.44 16 43 H 0.07 0.63 6.54 -2.39 -0.02 0.61 16 44 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.06 0.64 6.78 -2.39 -0.02 0.62 16 46 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.07 0.83 6.32 -2.39 -0.02 0.81 16 49 H 0.05 1.04 7.68 -2.38 -0.02 1.02 16 50 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -85.49 404.27 4.26 -81.23 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.40 Total: 21.24 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 6.81 Total: 5.43 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.17 Total: -105.95 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -1.81 Total: -47.19 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -85.49 4.26 -81.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.370 kcal (2) G-P(sol) polarization free energy of solvation -85.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds