Wall clock time and date at job start Tue Mar 31 2020 21:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46919 * 2 1 4 4 C 1.50696 * 109.47467 * 239.99762 * 2 1 3 5 5 O 1.21280 * 120.00095 * 240.00497 * 4 2 1 6 6 N 1.34771 * 119.99966 * 60.00047 * 4 2 1 7 7 C 1.46496 * 120.00157 * 359.97438 * 6 4 2 8 8 C 1.46506 * 120.00084 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.46928 * 270.00021 * 8 6 4 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 6 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 6 12 12 N 1.31522 * 119.99749 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00236 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47160 * 89.99730 * 13 11 9 15 15 H 1.48503 * 109.47061 * 209.99752 * 13 11 9 16 16 H 1.48500 * 109.46598 * 329.99398 * 13 11 9 17 17 N 1.46500 * 109.46641 * 119.99595 * 2 1 3 18 18 C 1.35306 * 125.87222 * 35.00002 * 17 2 1 19 19 C 1.35349 * 106.17932 * 179.97438 * 18 17 2 20 20 C 1.50704 * 126.75180 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.47188 * 125.00366 * 20 19 18 22 22 H 1.09002 * 109.46999 * 54.99582 * 21 20 19 23 23 O 1.42897 * 109.46925 * 294.99776 * 21 20 19 24 24 C 1.53000 * 109.47123 * 174.99882 * 21 20 19 25 25 C 1.53001 * 109.47413 * 59.99695 * 24 21 20 26 26 C 1.52998 * 109.47123 * 179.97438 * 24 21 20 27 27 C 1.52999 * 109.46964 * 299.99920 * 24 21 20 28 28 N 1.33765 * 106.49772 * 0.02562 * 19 18 17 29 29 N 1.28647 * 108.88548 * 359.73224 * 28 19 18 30 30 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47276 * 300.00381 * 1 2 3 32 32 H 1.09001 * 109.46709 * 60.00399 * 1 2 3 33 33 H 1.08995 * 109.47445 * 269.99904 * 7 6 4 34 34 H 1.09001 * 109.47057 * 30.00532 * 7 6 4 35 35 H 1.08999 * 109.47333 * 150.00092 * 7 6 4 36 36 H 1.09004 * 109.47073 * 29.99849 * 8 6 4 37 37 H 1.09000 * 109.47212 * 149.99932 * 8 6 4 38 38 H 0.97001 * 119.99269 * 180.02562 * 12 11 9 39 39 H 1.08004 * 126.91167 * 359.97438 * 18 17 2 40 40 H 1.08998 * 109.46619 * 245.00338 * 20 19 18 41 41 H 1.09003 * 109.47139 * 4.99929 * 20 19 18 42 42 H 0.96697 * 114.00388 * 299.99833 * 23 21 20 43 43 H 1.09008 * 109.46529 * 59.99728 * 25 24 21 44 44 H 1.08992 * 109.47407 * 179.97438 * 25 24 21 45 45 H 1.08998 * 109.46804 * 300.00638 * 25 24 21 46 46 H 1.09003 * 109.47416 * 60.00032 * 26 24 21 47 47 H 1.09000 * 109.47604 * 180.02562 * 26 24 21 48 48 H 1.08997 * 109.47309 * 300.00072 * 26 24 21 49 49 H 1.08998 * 109.47555 * 60.00285 * 27 24 21 50 50 H 1.09003 * 109.47203 * 180.02562 * 27 24 21 51 51 H 1.09003 * 109.47145 * 299.99705 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7069 -0.2500 -2.4545 7 6 0.8642 0.9407 -2.5890 8 6 2.1949 -0.9410 -3.6506 9 6 3.5226 -0.3580 -4.0610 10 1 3.9594 0.4464 -3.4878 11 6 4.1801 -0.8523 -5.1674 12 7 5.3386 -0.3432 -5.5258 13 14 3.4248 -2.2442 -6.1584 14 1 2.5654 -1.6795 -7.2297 15 1 4.5051 -3.0600 -6.7689 16 1 2.6037 -3.0994 -5.2642 17 7 2.0183 -0.6905 1.1962 18 6 1.4357 -1.7586 1.7885 19 6 2.2129 -2.0708 2.8517 20 6 1.9885 -3.1907 3.8348 21 6 3.2365 -4.0736 3.8956 22 1 4.1058 -3.4585 4.1284 23 8 3.4299 -4.7128 2.6323 24 6 3.0574 -5.1357 4.9823 25 6 1.8373 -5.9990 4.6556 26 6 4.3052 -6.0190 5.0428 27 6 2.8504 -4.4513 6.3350 28 7 3.2194 -1.1897 2.8581 29 7 3.0781 -0.3887 1.8615 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1836 0.6424 -2.6226 34 1 1.0273 1.5995 -1.7361 35 1 1.1219 1.4663 -3.5085 36 1 2.3156 -2.0023 -3.4333 37 1 1.4769 -0.8155 -4.4611 38 1 5.8009 -0.6907 -6.3045 39 1 0.5322 -2.2609 1.4758 40 1 1.7903 -2.7732 4.8220 41 1 1.1353 -3.7891 3.5154 42 1 2.6937 -5.2777 2.3605 43 1 1.9848 -6.4865 3.6919 44 1 1.7100 -6.7559 5.4295 45 1 0.9482 -5.3699 4.6122 46 1 5.1747 -5.4042 5.2754 47 1 4.1775 -6.7759 5.8166 48 1 4.4523 -6.5065 4.0790 49 1 1.9613 -3.8223 6.2917 50 1 2.7233 -5.2079 7.1093 51 1 3.7197 -3.8363 6.5679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603188422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:22 Heat of formation + Delta-G solvation = 13.783510 kcal Electronic energy + Delta-G solvation = -30511.496483 eV Core-core repulsion = 26448.736152 eV Total energy + Delta-G solvation = -4062.760331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.11340 -39.62539 -39.24763 -35.33514 -35.25162 -34.79519 -32.85410 -32.48296 -30.74807 -28.94545 -28.38163 -27.64180 -27.20351 -26.56077 -24.90005 -24.05920 -23.02725 -21.38132 -20.96746 -19.27154 -19.06209 -17.32564 -17.09227 -17.01463 -16.41818 -15.74960 -15.65171 -15.30541 -15.09240 -14.90184 -14.72157 -14.37912 -14.08239 -13.84703 -13.75186 -13.43549 -13.14810 -12.60964 -12.59882 -12.55353 -12.47968 -12.33244 -12.26164 -12.05659 -11.93876 -11.87805 -11.71843 -11.55339 -11.37018 -11.33046 -11.04516 -11.02231 -10.74590 -10.61605 -10.49071 -10.26164 -10.16860 -9.83336 -9.62138 -9.21322 -8.83559 -8.65317 -7.95054 -6.14091 -4.14433 1.76019 2.37006 2.73809 2.93221 3.21642 3.30672 3.33563 3.55162 4.22682 4.33862 4.36984 4.39821 4.44098 4.52351 4.61458 4.64019 4.75345 4.89361 4.96056 5.09822 5.15577 5.17694 5.25733 5.26161 5.32587 5.35199 5.46176 5.47633 5.50836 5.54211 5.60129 5.61543 5.68609 5.69289 5.80992 5.82320 5.93709 5.97548 6.03620 6.14416 6.23767 6.35859 6.46003 6.70394 6.82557 7.08597 7.51275 7.68331 7.92414 8.36549 8.62211 8.74935 8.88811 9.44432 10.99190 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.002804 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.457401 B = 9983.332002 C =11125.569386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 H 0.135 0.865 4 C 0.498 3.502 5 O -0.514 6.514 6 N -0.588 5.588 7 C 0.073 3.927 8 C 0.218 3.782 9 C -0.534 4.534 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.893 5.893 13 Si 0.875 3.125 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.264 1.264 17 N -0.265 5.265 18 C -0.034 4.034 19 C -0.018 4.018 20 C -0.063 4.063 21 C 0.122 3.878 22 H 0.105 0.895 23 O -0.548 6.548 24 C -0.101 4.101 25 C -0.150 4.150 26 C -0.137 4.137 27 C -0.144 4.144 28 N -0.266 5.266 29 N -0.074 5.074 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.181 0.819 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.367 0.633 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.059 0.941 50 H 0.055 0.945 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 -5.219 19.806 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 H 0.152 0.848 4 C 0.281 3.719 5 O -0.389 6.389 6 N -0.320 5.320 7 C -0.070 4.070 8 C 0.097 3.903 9 C -0.573 4.573 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.531 5.531 13 Si 0.702 3.298 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.189 1.189 17 N -0.058 5.058 18 C -0.185 4.185 19 C -0.156 4.156 20 C -0.103 4.103 21 C 0.062 3.938 22 H 0.123 0.877 23 O -0.353 6.353 24 C -0.101 4.101 25 C -0.207 4.207 26 C -0.195 4.195 27 C -0.201 4.201 28 N -0.133 5.133 29 N -0.052 5.052 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.198 0.802 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.214 0.786 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.758 -4.461 19.808 24.526 hybrid contribution -1.673 -1.475 -1.000 2.445 sum -15.432 -5.937 18.808 25.043 Atomic orbital electron populations 1.22410 0.90254 1.04732 1.05451 1.21601 0.96880 0.98215 0.81748 0.84772 1.20041 0.81937 0.85696 0.84200 1.90796 1.36380 1.26116 1.85594 1.47754 1.49768 1.28351 1.06174 1.21949 0.93675 0.87816 1.03607 1.19743 0.95370 0.93967 0.81172 1.21281 1.03150 1.20555 1.12278 0.90688 1.24860 0.94644 0.96368 0.97047 1.69897 1.14738 1.42110 1.26390 0.86860 0.79466 0.82932 0.80562 1.20009 1.20799 1.18892 1.46809 1.17216 1.21727 1.20060 1.23073 1.03687 0.94312 0.97384 1.21584 0.94613 1.00227 0.99138 1.20704 0.99292 0.92991 0.97287 1.21938 0.97783 0.91246 0.82805 0.87699 1.86727 1.46395 1.65494 1.36642 1.21250 0.96383 0.96373 0.96143 1.21969 0.97227 0.99711 1.01824 1.21780 0.96570 0.99087 1.02019 1.21919 1.02131 1.00421 0.95655 1.74947 1.20640 1.04023 1.13644 1.78306 1.03093 1.21656 1.02187 0.90780 0.90367 0.87776 0.92755 0.91937 0.89833 0.94007 0.95195 0.92422 0.80233 0.89205 0.90047 0.78632 0.92390 0.92313 0.92185 0.92590 0.92983 0.91910 0.92167 0.92551 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 8.47 37.16 0.31 -1.20 16 2 C 0.12 1.73 2.85 -69.08 -0.20 1.53 16 3 H 0.13 1.72 7.40 -51.93 -0.38 1.34 16 4 C 0.50 9.74 7.14 -10.99 -0.08 9.66 16 5 O -0.51 -12.86 16.00 5.56 0.09 -12.78 16 6 N -0.59 -11.18 2.86 -182.96 -0.52 -11.70 16 7 C 0.07 0.94 8.80 59.84 0.53 1.47 16 8 C 0.22 5.11 4.23 -5.19 -0.02 5.09 16 9 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 10 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 12 N -0.89 -27.64 13.96 55.43 0.77 -26.86 16 13 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 17 N -0.27 -4.31 2.75 -55.89 -0.15 -4.47 16 18 C -0.03 -0.47 10.59 -17.05 -0.18 -0.65 16 19 C -0.02 -0.26 6.27 -82.78 -0.52 -0.78 16 20 C -0.06 -0.64 4.75 -27.88 -0.13 -0.77 16 21 C 0.12 1.36 2.28 -26.73 -0.06 1.30 16 22 H 0.11 1.42 8.13 -51.93 -0.42 1.00 16 23 O -0.55 -7.41 12.38 -35.23 -0.44 -7.85 16 24 C -0.10 -0.83 0.63 -154.51 -0.10 -0.93 16 25 C -0.15 -0.99 7.82 37.16 0.29 -0.70 16 26 C -0.14 -1.22 8.33 37.16 0.31 -0.91 16 27 C -0.14 -1.03 8.13 37.16 0.30 -0.73 16 28 N -0.27 -4.82 12.39 33.29 0.41 -4.40 16 29 N -0.07 -1.41 13.17 60.35 0.79 -0.61 16 30 H 0.07 0.64 7.17 -51.93 -0.37 0.26 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.76 4.53 -51.93 -0.24 0.52 16 33 H 0.05 0.52 6.95 -51.93 -0.36 0.16 16 34 H 0.06 0.63 6.01 -51.93 -0.31 0.32 16 35 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 37 H 0.03 0.65 7.50 -51.93 -0.39 0.26 16 38 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.18 1.84 7.30 -52.48 -0.38 1.46 16 40 H 0.09 0.78 6.17 -51.93 -0.32 0.46 16 41 H 0.08 0.62 6.69 -51.93 -0.35 0.28 16 42 H 0.37 3.68 7.33 45.56 0.33 4.01 16 43 H 0.06 0.38 6.78 -51.92 -0.35 0.03 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.34 6.54 -51.93 -0.34 0.00 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 49 H 0.06 0.39 6.32 -51.93 -0.33 0.06 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -39.09 399.71 -5.17 -44.26 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.49 Total: 2.88 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 0.02 Total: -1.10 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 1.30 Total: -48.05 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.35 Total: -20.63 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.09 -5.17 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.042 kcal (2) G-P(sol) polarization free energy of solvation -39.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds