Wall clock time and date at job start Tue Mar 31 2020 21:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46919 * 2 1 4 4 C 1.50696 * 109.47467 * 239.99762 * 2 1 3 5 5 O 1.21280 * 120.00095 * 240.00497 * 4 2 1 6 6 N 1.34771 * 119.99966 * 60.00047 * 4 2 1 7 7 C 1.46496 * 120.00157 * 359.97438 * 6 4 2 8 8 C 1.46506 * 120.00084 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.46928 * 270.00021 * 8 6 4 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 6 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 6 12 12 N 1.31522 * 119.99749 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00236 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47160 * 89.99730 * 13 11 9 15 15 H 1.48503 * 109.47061 * 209.99752 * 13 11 9 16 16 H 1.48500 * 109.46598 * 329.99398 * 13 11 9 17 17 N 1.46500 * 109.46641 * 119.99595 * 2 1 3 18 18 C 1.35306 * 125.87222 * 35.00002 * 17 2 1 19 19 C 1.35349 * 106.17932 * 179.97438 * 18 17 2 20 20 C 1.50704 * 126.75180 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.47188 * 125.00366 * 20 19 18 22 22 H 1.09002 * 109.46999 * 54.99582 * 21 20 19 23 23 O 1.42897 * 109.46925 * 294.99776 * 21 20 19 24 24 C 1.53000 * 109.47123 * 174.99882 * 21 20 19 25 25 C 1.53001 * 109.47413 * 59.99695 * 24 21 20 26 26 C 1.52998 * 109.47123 * 179.97438 * 24 21 20 27 27 C 1.52999 * 109.46964 * 299.99920 * 24 21 20 28 28 N 1.33765 * 106.49772 * 0.02562 * 19 18 17 29 29 N 1.28647 * 108.88548 * 359.73224 * 28 19 18 30 30 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47276 * 300.00381 * 1 2 3 32 32 H 1.09001 * 109.46709 * 60.00399 * 1 2 3 33 33 H 1.08995 * 109.47445 * 269.99904 * 7 6 4 34 34 H 1.09001 * 109.47057 * 30.00532 * 7 6 4 35 35 H 1.08999 * 109.47333 * 150.00092 * 7 6 4 36 36 H 1.09004 * 109.47073 * 29.99849 * 8 6 4 37 37 H 1.09000 * 109.47212 * 149.99932 * 8 6 4 38 38 H 0.97001 * 119.99269 * 180.02562 * 12 11 9 39 39 H 1.08004 * 126.91167 * 359.97438 * 18 17 2 40 40 H 1.08998 * 109.46619 * 245.00338 * 20 19 18 41 41 H 1.09003 * 109.47139 * 4.99929 * 20 19 18 42 42 H 0.96697 * 114.00388 * 299.99833 * 23 21 20 43 43 H 1.09008 * 109.46529 * 59.99728 * 25 24 21 44 44 H 1.08992 * 109.47407 * 179.97438 * 25 24 21 45 45 H 1.08998 * 109.46804 * 300.00638 * 25 24 21 46 46 H 1.09003 * 109.47416 * 60.00032 * 26 24 21 47 47 H 1.09000 * 109.47604 * 180.02562 * 26 24 21 48 48 H 1.08997 * 109.47309 * 300.00072 * 26 24 21 49 49 H 1.08998 * 109.47555 * 60.00285 * 27 24 21 50 50 H 1.09003 * 109.47203 * 180.02562 * 27 24 21 51 51 H 1.09003 * 109.47145 * 299.99705 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7069 -0.2500 -2.4545 7 6 0.8642 0.9407 -2.5890 8 6 2.1949 -0.9410 -3.6506 9 6 3.5226 -0.3580 -4.0610 10 1 3.9594 0.4464 -3.4878 11 6 4.1801 -0.8523 -5.1674 12 7 5.3386 -0.3432 -5.5258 13 14 3.4248 -2.2442 -6.1584 14 1 2.5654 -1.6795 -7.2297 15 1 4.5051 -3.0600 -6.7689 16 1 2.6037 -3.0994 -5.2642 17 7 2.0183 -0.6905 1.1962 18 6 1.4357 -1.7586 1.7885 19 6 2.2129 -2.0708 2.8517 20 6 1.9885 -3.1907 3.8348 21 6 3.2365 -4.0736 3.8956 22 1 4.1058 -3.4585 4.1284 23 8 3.4299 -4.7128 2.6323 24 6 3.0574 -5.1357 4.9823 25 6 1.8373 -5.9990 4.6556 26 6 4.3052 -6.0190 5.0428 27 6 2.8504 -4.4513 6.3350 28 7 3.2194 -1.1897 2.8581 29 7 3.0781 -0.3887 1.8615 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1836 0.6424 -2.6226 34 1 1.0273 1.5995 -1.7361 35 1 1.1219 1.4663 -3.5085 36 1 2.3156 -2.0023 -3.4333 37 1 1.4769 -0.8155 -4.4611 38 1 5.8009 -0.6907 -6.3045 39 1 0.5322 -2.2609 1.4758 40 1 1.7903 -2.7732 4.8220 41 1 1.1353 -3.7891 3.5154 42 1 2.6937 -5.2777 2.3605 43 1 1.9848 -6.4865 3.6919 44 1 1.7100 -6.7559 5.4295 45 1 0.9482 -5.3699 4.6122 46 1 5.1747 -5.4042 5.2754 47 1 4.1775 -6.7759 5.8166 48 1 4.4523 -6.5065 4.0790 49 1 1.9613 -3.8223 6.2917 50 1 2.7233 -5.2079 7.1093 51 1 3.7197 -3.8363 6.5679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603188422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:21 Heat of formation + Delta-G solvation = -17.394568 kcal Electronic energy + Delta-G solvation = -30512.848466 eV Core-core repulsion = 26448.736152 eV Total energy + Delta-G solvation = -4064.112314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.29047 -41.06032 -40.08853 -36.89848 -36.49680 -35.65157 -34.76099 -33.69939 -32.02490 -30.10254 -29.89106 -28.18657 -27.88736 -27.77777 -26.05744 -25.00557 -24.74143 -22.66595 -22.15078 -20.47705 -19.99692 -19.20473 -18.45532 -18.41374 -17.35649 -17.06112 -16.81046 -16.61162 -16.38741 -15.97602 -15.83194 -15.48854 -15.19233 -14.92654 -14.76792 -14.64735 -14.37446 -14.02854 -13.76509 -13.64538 -13.51193 -13.28932 -13.23762 -13.02298 -12.91657 -12.81993 -12.77649 -12.62362 -12.54667 -12.42518 -12.31504 -12.11575 -12.05148 -11.81766 -11.76810 -11.65198 -11.49574 -11.29533 -10.86174 -10.76153 -10.66161 -9.94963 -9.54840 -8.38139 -6.44772 0.57100 1.27841 1.29019 1.35442 1.44775 1.47560 1.58279 2.17729 2.28016 2.96114 3.26210 3.31900 3.52490 3.54701 3.62922 3.66626 3.88766 4.01408 4.07462 4.15840 4.28223 4.35450 4.46109 4.50142 4.55435 4.57390 4.62273 4.74401 4.74993 4.80319 4.84658 4.85296 4.89699 4.90452 4.96161 5.07572 5.09909 5.11858 5.17870 5.20333 5.23449 5.37082 5.40446 5.45166 5.53604 5.56902 5.60592 6.15771 6.45963 6.57761 6.89515 7.07844 7.22394 7.53678 8.79252 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.002804 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.457401 B = 9983.332002 C =11125.569386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.144 0.856 4 C 0.490 3.510 5 O -0.583 6.583 6 N -0.592 5.592 7 C 0.061 3.939 8 C 0.225 3.775 9 C -0.542 4.542 10 H 0.023 0.977 11 C 0.007 3.993 12 N -0.947 5.947 13 Si 0.952 3.048 14 H -0.244 1.244 15 H -0.286 1.286 16 H -0.253 1.253 17 N -0.269 5.269 18 C -0.028 4.028 19 C -0.025 4.025 20 C -0.058 4.058 21 C 0.122 3.878 22 H 0.068 0.932 23 O -0.579 6.579 24 C -0.092 4.092 25 C -0.148 4.148 26 C -0.139 4.139 27 C -0.143 4.143 28 N -0.299 5.299 29 N -0.129 5.129 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.019 0.981 37 H 0.062 0.938 38 H 0.269 0.731 39 H 0.221 0.779 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.380 0.620 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.027 -6.265 20.379 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 H 0.162 0.838 4 C 0.275 3.725 5 O -0.463 6.463 6 N -0.323 5.323 7 C -0.080 4.080 8 C 0.103 3.897 9 C -0.580 4.580 10 H 0.042 0.958 11 C -0.191 4.191 12 N -0.587 5.587 13 Si 0.774 3.226 14 H -0.168 1.168 15 H -0.212 1.212 16 H -0.177 1.177 17 N -0.062 5.062 18 C -0.179 4.179 19 C -0.164 4.164 20 C -0.097 4.097 21 C 0.062 3.938 22 H 0.086 0.914 23 O -0.387 6.387 24 C -0.092 4.092 25 C -0.205 4.205 26 C -0.196 4.196 27 C -0.200 4.200 28 N -0.165 5.165 29 N -0.107 5.107 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.238 0.762 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.229 0.771 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.765 -5.433 20.393 28.240 hybrid contribution -0.050 -1.098 -1.138 1.582 sum -18.815 -6.532 19.255 27.702 Atomic orbital electron populations 1.22516 0.85315 1.06134 1.07865 1.21810 1.00325 0.97220 0.78444 0.83821 1.21007 0.80683 0.85030 0.85734 1.90755 1.39415 1.29360 1.86785 1.47813 1.49906 1.29646 1.04897 1.22402 0.95110 0.86015 1.04481 1.19397 0.93648 0.92795 0.83847 1.21569 1.05476 1.19326 1.11646 0.95827 1.25950 0.95048 0.99503 0.98575 1.70074 1.16824 1.44337 1.27492 0.85653 0.78818 0.78881 0.79237 1.16796 1.21188 1.17690 1.47052 1.16644 1.22375 1.20125 1.23810 1.04447 0.93250 0.96409 1.22351 0.93550 1.00368 1.00157 1.20864 0.99699 0.91779 0.97317 1.21889 0.97006 0.91897 0.82959 0.91402 1.86685 1.47801 1.66146 1.38029 1.21152 0.96903 0.95593 0.95600 1.21970 0.96590 0.99835 1.02128 1.21796 0.96676 0.99379 1.01739 1.21926 1.02163 1.00758 0.95191 1.74881 1.22310 1.05172 1.14140 1.78242 1.05127 1.23547 1.03752 0.89906 0.87599 0.85581 0.87858 0.89007 0.90988 0.96263 0.91988 0.92248 0.76198 0.87428 0.86644 0.77060 0.92488 0.91279 0.90553 0.94086 0.91289 0.93319 0.90897 0.91175 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.47 71.98 0.61 -1.50 16 2 C 0.13 3.40 2.85 44.25 0.13 3.52 16 3 H 0.14 3.49 7.40 -2.38 -0.02 3.47 16 4 C 0.49 19.04 7.14 87.66 0.63 19.66 16 5 O -0.58 -30.17 16.00 -3.03 -0.05 -30.22 16 6 N -0.59 -21.88 2.86 -851.14 -2.43 -24.31 16 7 C 0.06 1.37 8.80 127.77 1.12 2.50 16 8 C 0.23 10.51 4.23 85.63 0.36 10.87 16 9 C -0.54 -31.91 9.94 25.60 0.25 -31.66 16 10 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 11 C 0.01 0.42 5.47 84.65 0.46 0.89 16 12 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 13 Si 0.95 44.08 27.47 68.60 1.88 45.96 16 14 H -0.24 -10.09 7.11 99.48 0.71 -9.38 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 17 N -0.27 -8.58 2.75 -330.74 -0.91 -9.49 16 18 C -0.03 -0.73 10.59 83.49 0.88 0.15 16 19 C -0.03 -0.72 6.27 41.60 0.26 -0.45 16 20 C -0.06 -1.06 4.75 29.85 0.14 -0.92 16 21 C 0.12 2.71 2.28 30.59 0.07 2.78 16 22 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 23 O -0.58 -15.99 12.38 -148.98 -1.84 -17.83 16 24 C -0.09 -1.40 0.63 -52.18 -0.03 -1.43 16 25 C -0.15 -1.54 7.82 71.98 0.56 -0.97 16 26 C -0.14 -2.46 8.33 71.98 0.60 -1.86 16 27 C -0.14 -1.80 8.13 71.98 0.59 -1.21 16 28 N -0.30 -11.22 12.39 -48.60 -0.60 -11.83 16 29 N -0.13 -5.10 13.17 37.02 0.49 -4.61 16 30 H 0.08 1.00 7.17 -2.39 -0.02 0.98 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.13 1.10 4.53 -2.39 -0.01 1.09 16 33 H 0.10 1.39 6.95 -2.39 -0.02 1.37 16 34 H 0.09 1.54 6.01 -2.39 -0.01 1.52 16 35 H 0.07 1.83 8.07 -2.39 -0.02 1.81 16 36 H 0.02 0.99 6.48 -2.38 -0.02 0.98 16 37 H 0.06 2.51 7.50 -2.39 -0.02 2.49 16 38 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 39 H 0.22 3.60 7.30 -2.91 -0.02 3.58 16 40 H 0.11 1.60 6.17 -2.39 -0.01 1.59 16 41 H 0.12 1.32 6.69 -2.39 -0.02 1.31 16 42 H 0.38 7.43 7.33 -74.06 -0.54 6.88 16 43 H 0.06 0.61 6.78 -2.38 -0.02 0.60 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.55 6.54 -2.39 -0.02 0.54 16 46 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.05 0.99 7.68 -2.39 -0.02 0.97 16 49 H 0.07 0.73 6.32 -2.39 -0.02 0.72 16 50 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -95.65 399.71 3.82 -91.84 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.35 Total: 20.76 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.64 Total: 0.37 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -3.16 Total: -110.89 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -1.89 Total: -48.05 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -95.65 3.82 -91.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.441 kcal (2) G-P(sol) polarization free energy of solvation -95.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds