Wall clock time and date at job start Tue Mar 31 2020 20:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47758 * 2 1 4 4 C 1.53003 * 109.47384 * 239.99335 * 2 1 3 5 5 N 1.46493 * 109.47309 * 185.00339 * 4 2 1 6 6 C 1.46766 * 124.35288 * 90.00392 * 5 4 2 7 7 C 1.54480 * 105.47587 * 197.01768 * 6 5 4 8 8 C 1.54631 * 101.76162 * 334.58212 * 7 6 5 9 9 C 1.34426 * 124.34946 * 269.70497 * 5 4 2 10 10 O 1.21281 * 124.93981 * 359.56781 * 9 5 4 11 11 N 1.46501 * 109.47001 * 119.99950 * 2 1 3 12 12 C 1.34777 * 119.99767 * 275.00008 * 11 2 1 13 13 O 1.21588 * 120.00414 * 0.02562 * 12 11 2 14 14 N 1.34778 * 119.99938 * 180.27336 * 12 11 2 15 15 C 1.46503 * 120.00047 * 179.72278 * 14 12 11 16 16 C 1.53039 * 109.46016 * 275.02877 * 15 14 12 17 17 C 1.53194 * 109.30989 * 178.60108 * 16 15 14 18 18 N 1.46928 * 108.76778 * 54.65645 * 17 16 15 19 19 C 1.36937 * 120.63167 * 126.35871 * 18 17 16 20 20 H 1.07990 * 120.00153 * 331.86383 * 19 18 17 21 21 C 1.38818 * 119.99639 * 151.86301 * 19 18 17 22 22 N 1.31618 * 119.99918 * 343.06422 * 21 19 18 23 23 Si 1.86796 * 119.99462 * 163.06211 * 21 19 18 24 24 H 1.48500 * 109.47308 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46914 * 120.00192 * 23 21 19 26 26 H 1.48505 * 109.47121 * 239.99693 * 23 21 19 27 27 C 1.46931 * 118.73603 * 306.38251 * 18 17 16 28 28 C 1.53045 * 109.45833 * 154.97436 * 15 14 12 29 29 H 1.09003 * 109.47606 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47655 * 300.00699 * 1 2 3 31 31 H 1.08998 * 109.46869 * 60.00437 * 1 2 3 32 32 H 1.09003 * 109.47293 * 305.00891 * 4 2 1 33 33 H 1.09000 * 109.46562 * 65.00465 * 4 2 1 34 34 H 1.09003 * 110.24336 * 316.01413 * 6 5 4 35 35 H 1.08996 * 110.24328 * 77.92774 * 6 5 4 36 36 H 1.08996 * 110.97125 * 92.69786 * 7 6 5 37 37 H 1.08999 * 110.96947 * 216.46263 * 7 6 5 38 38 H 1.09005 * 110.48462 * 143.47501 * 8 7 6 39 39 H 1.09002 * 110.48699 * 265.98436 * 8 7 6 40 40 H 0.96998 * 120.00727 * 94.99340 * 11 2 1 41 41 H 0.96998 * 119.99906 * 359.72673 * 14 12 11 42 42 H 1.09008 * 109.45831 * 35.00322 * 15 14 12 43 43 H 1.09000 * 109.49779 * 298.56141 * 16 15 14 44 44 H 1.08995 * 109.49784 * 58.66404 * 16 15 14 45 45 H 1.09002 * 109.59986 * 294.86663 * 17 16 15 46 46 H 1.09001 * 109.70177 * 174.50295 * 17 16 15 47 47 H 0.96999 * 119.99312 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.58597 * 293.82221 * 27 18 17 49 49 H 1.08996 * 109.69990 * 173.46453 * 27 18 17 50 50 H 1.09004 * 109.49752 * 301.33615 * 28 15 14 51 51 H 1.08998 * 109.49998 * 61.43628 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8266 -1.1904 6 6 4.2257 -1.9490 -0.5842 7 6 5.6664 -1.4370 -0.3632 8 6 5.7779 -0.3342 -1.4413 9 6 4.3472 0.0898 -1.6900 10 8 4.0130 1.1093 -2.2555 11 7 2.0182 -0.6906 1.1962 12 6 2.1469 -0.0182 2.3571 13 8 1.8573 1.1614 2.4119 14 7 2.6014 -0.6522 3.4563 15 6 2.7470 0.0802 4.7167 16 6 4.1041 0.7873 4.7417 17 6 4.2383 1.5802 6.0456 18 7 4.0109 0.6710 7.1772 19 6 4.9315 0.5684 8.1857 20 1 5.9752 0.7606 7.9856 21 6 4.5232 0.2174 9.4652 22 7 3.2530 0.3068 9.7983 23 14 5.7765 -0.3818 10.7139 24 1 7.1265 -0.3906 10.0954 25 1 5.7769 0.5257 11.8894 26 1 5.4224 -1.7565 11.1501 27 6 2.7770 -0.1263 7.2059 28 6 2.6592 -0.8998 5.8889 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -1.7199 -1.2951 33 1 1.7517 -0.1585 -2.1369 34 1 3.7718 -2.2209 0.3688 35 1 4.2275 -2.8052 -1.2586 36 1 5.7826 -1.0184 0.6364 37 1 6.3934 -2.2298 -0.5394 38 1 6.3680 0.5038 -1.0702 39 1 6.2190 -0.7358 -2.3537 40 1 2.2489 -1.6318 1.1528 41 1 2.8321 -1.5933 3.4127 42 1 1.9506 0.8197 4.8011 43 1 4.9014 0.0464 4.6825 44 1 4.1754 1.4678 3.8933 45 1 3.4980 2.3800 6.0650 46 1 5.2390 2.0067 6.1150 47 1 2.9677 0.0612 10.6922 48 1 1.9177 0.5344 7.3199 49 1 2.8120 -0.8275 8.0397 50 1 1.7019 -1.4202 5.8571 51 1 3.4702 -1.6246 5.8188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609337785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:02 Heat of formation + Delta-G solvation = -43.427292 kcal Electronic energy + Delta-G solvation = -30693.957180 eV Core-core repulsion = 26628.716003 eV Total energy + Delta-G solvation = -4065.241178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.85724 -39.87694 -37.70023 -36.78332 -35.87675 -34.31523 -32.89342 -32.04197 -30.77973 -29.96517 -29.06050 -27.92470 -26.59767 -25.00455 -22.73913 -22.30958 -22.17472 -21.45344 -20.53316 -19.77894 -19.44687 -18.21087 -17.11281 -16.99805 -16.65868 -16.47840 -15.55935 -15.14666 -14.90680 -14.53135 -14.32331 -14.18527 -14.13702 -13.82961 -13.58097 -13.53227 -13.32452 -13.05943 -12.94729 -12.79715 -12.46790 -12.43905 -12.29771 -12.14291 -11.83731 -11.45972 -11.43161 -11.31494 -11.12004 -10.84503 -10.73578 -10.47612 -10.25629 -10.07194 -10.03209 -9.97766 -9.74219 -9.53286 -9.31768 -8.95302 -8.59874 -8.43832 -6.68154 -5.79781 -3.21853 2.30517 2.58029 2.81387 3.36049 3.40073 3.44187 3.46389 3.98804 4.08339 4.25252 4.40957 4.49145 4.50502 4.63383 4.72344 4.98458 5.01585 5.10614 5.18795 5.26742 5.34124 5.34552 5.41523 5.45700 5.49582 5.51546 5.61638 5.62506 5.79528 5.90851 5.96651 6.08963 6.19517 6.29974 6.37049 6.44960 6.50346 6.59132 6.62007 6.76633 6.81550 6.91102 7.00165 7.11636 7.32141 7.62113 7.79513 7.88146 8.15567 8.44486 8.78711 9.20735 9.83984 10.41278 11.29167 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.002550 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.887152 B =10979.018593 C =11807.356586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.092 0.908 4 C 0.119 3.881 5 N -0.617 5.617 6 C 0.103 3.897 7 C -0.132 4.132 8 C -0.155 4.155 9 C 0.518 3.482 10 O -0.530 6.530 11 N -0.744 5.744 12 C 0.702 3.298 13 O -0.587 6.587 14 N -0.740 5.740 15 C 0.170 3.830 16 C -0.138 4.138 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.175 3.825 28 C -0.145 4.145 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.388 0.612 41 H 0.389 0.611 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.091 0.909 50 H 0.053 0.947 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -10.371 -23.557 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.004 4.004 5 N -0.351 5.351 6 C -0.020 4.020 7 C -0.170 4.170 8 C -0.195 4.195 9 C 0.306 3.694 10 O -0.406 6.406 11 N -0.402 5.402 12 C 0.402 3.598 13 O -0.465 6.465 14 N -0.393 5.393 15 C 0.066 3.934 16 C -0.178 4.178 17 C 0.020 3.980 18 N -0.316 5.316 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.185 4.185 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.222 0.778 41 H 0.221 0.779 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.109 0.891 50 H 0.072 0.928 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.192 -8.726 -23.628 25.216 hybrid contribution 0.721 -1.348 0.724 1.692 sum -0.471 -10.075 -22.903 25.026 Atomic orbital electron populations 1.22147 0.94718 1.02084 1.03143 1.21215 0.94027 0.98096 0.82950 0.88985 1.21761 0.78494 1.01729 0.98378 1.48193 1.05812 1.22444 1.58664 1.22130 0.92458 0.89076 0.98317 1.22594 0.95825 0.98620 0.99973 1.22324 0.95153 1.00960 1.01107 1.20947 0.88675 0.82527 0.77267 1.90740 1.82154 1.25011 1.42733 1.45253 1.72749 1.13073 1.09092 1.16025 0.78309 0.85212 0.80263 1.90931 1.56991 1.14294 1.84271 1.45545 1.70384 1.13407 1.09977 1.20895 0.98146 0.94054 0.80342 1.22371 0.96454 0.99641 0.99347 1.20879 0.98943 0.91618 0.86530 1.44105 1.21353 1.44308 1.21803 1.19235 0.88612 1.42826 0.87383 0.91613 1.25059 0.96109 1.01845 0.96719 1.70039 1.14492 1.50910 1.19310 0.86230 0.80945 0.78279 0.81368 1.20267 1.21732 1.21599 1.20731 0.87903 0.93817 0.92718 1.22537 1.00275 0.98425 0.97294 0.92494 0.91297 0.91574 0.89791 0.88445 0.90697 0.90924 0.89626 0.89027 0.87914 0.87909 0.77798 0.77879 0.90160 0.92553 0.92802 0.96190 0.92632 0.93668 0.96139 0.89069 0.92845 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.15 0.35 -1.08 16 2 C 0.14 1.43 2.88 -67.93 -0.20 1.23 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 4 C 0.12 0.87 5.51 -4.04 -0.02 0.84 16 5 N -0.62 -4.92 2.75 -172.41 -0.47 -5.40 16 6 C 0.10 0.51 7.07 -3.12 -0.02 0.49 16 7 C -0.13 -0.68 7.18 -25.10 -0.18 -0.86 16 8 C -0.16 -1.10 6.86 -26.74 -0.18 -1.28 16 9 C 0.52 5.57 8.02 -10.86 -0.09 5.49 16 10 O -0.53 -8.05 17.59 5.56 0.10 -7.95 16 11 N -0.74 -7.43 4.51 -58.68 -0.26 -7.70 16 12 C 0.70 10.25 8.50 -86.92 -0.74 9.51 16 13 O -0.59 -11.45 15.67 5.29 0.08 -11.37 16 14 N -0.74 -10.06 5.08 -58.63 -0.30 -10.36 16 15 C 0.17 2.94 2.42 -67.89 -0.16 2.78 16 16 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 17 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 18 N -0.59 -14.79 2.99 -172.32 -0.52 -15.30 16 19 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 22 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 23 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 28 C -0.15 -2.61 5.55 -26.61 -0.15 -2.76 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.76 7.92 -51.93 -0.41 0.35 16 34 H 0.07 0.32 5.95 -51.93 -0.31 0.01 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.39 2.68 6.52 -40.82 -0.27 2.41 16 41 H 0.39 4.06 8.62 -40.82 -0.35 3.71 16 42 H 0.08 1.62 7.58 -51.92 -0.39 1.22 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 50 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 402.58 15.07 6.07 6.07 Total: -1.00 -35.44 402.58 -10.27 -45.71 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.74 Total: 3.40 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -1.81 Total: 11.88 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.93 Total: -64.12 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.18 Total: -19.32 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.44 -10.27 -45.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.280 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds