Wall clock time and date at job start Tue Mar 31 2020 20:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47758 * 2 1 4 4 C 1.53003 * 109.47384 * 239.99335 * 2 1 3 5 5 N 1.46493 * 109.47309 * 185.00339 * 4 2 1 6 6 C 1.46766 * 124.35288 * 90.00392 * 5 4 2 7 7 C 1.54480 * 105.47587 * 197.01768 * 6 5 4 8 8 C 1.54631 * 101.76162 * 334.58212 * 7 6 5 9 9 C 1.34426 * 124.34946 * 269.70497 * 5 4 2 10 10 O 1.21281 * 124.93981 * 359.56781 * 9 5 4 11 11 N 1.46501 * 109.47001 * 119.99950 * 2 1 3 12 12 C 1.34777 * 119.99767 * 275.00008 * 11 2 1 13 13 O 1.21588 * 120.00414 * 0.02562 * 12 11 2 14 14 N 1.34778 * 119.99938 * 180.27336 * 12 11 2 15 15 C 1.46503 * 120.00047 * 179.72278 * 14 12 11 16 16 C 1.53039 * 109.46016 * 275.02877 * 15 14 12 17 17 C 1.53194 * 109.30989 * 178.60108 * 16 15 14 18 18 N 1.46928 * 108.76778 * 54.65645 * 17 16 15 19 19 C 1.36937 * 120.63167 * 126.35871 * 18 17 16 20 20 H 1.07990 * 120.00153 * 331.86383 * 19 18 17 21 21 C 1.38818 * 119.99639 * 151.86301 * 19 18 17 22 22 N 1.31618 * 119.99918 * 343.06422 * 21 19 18 23 23 Si 1.86796 * 119.99462 * 163.06211 * 21 19 18 24 24 H 1.48500 * 109.47308 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46914 * 120.00192 * 23 21 19 26 26 H 1.48505 * 109.47121 * 239.99693 * 23 21 19 27 27 C 1.46931 * 118.73603 * 306.38251 * 18 17 16 28 28 C 1.53045 * 109.45833 * 154.97436 * 15 14 12 29 29 H 1.09003 * 109.47606 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47655 * 300.00699 * 1 2 3 31 31 H 1.08998 * 109.46869 * 60.00437 * 1 2 3 32 32 H 1.09003 * 109.47293 * 305.00891 * 4 2 1 33 33 H 1.09000 * 109.46562 * 65.00465 * 4 2 1 34 34 H 1.09003 * 110.24336 * 316.01413 * 6 5 4 35 35 H 1.08996 * 110.24328 * 77.92774 * 6 5 4 36 36 H 1.08996 * 110.97125 * 92.69786 * 7 6 5 37 37 H 1.08999 * 110.96947 * 216.46263 * 7 6 5 38 38 H 1.09005 * 110.48462 * 143.47501 * 8 7 6 39 39 H 1.09002 * 110.48699 * 265.98436 * 8 7 6 40 40 H 0.96998 * 120.00727 * 94.99340 * 11 2 1 41 41 H 0.96998 * 119.99906 * 359.72673 * 14 12 11 42 42 H 1.09008 * 109.45831 * 35.00322 * 15 14 12 43 43 H 1.09000 * 109.49779 * 298.56141 * 16 15 14 44 44 H 1.08995 * 109.49784 * 58.66404 * 16 15 14 45 45 H 1.09002 * 109.59986 * 294.86663 * 17 16 15 46 46 H 1.09001 * 109.70177 * 174.50295 * 17 16 15 47 47 H 0.96999 * 119.99312 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.58597 * 293.82221 * 27 18 17 49 49 H 1.08996 * 109.69990 * 173.46453 * 27 18 17 50 50 H 1.09004 * 109.49752 * 301.33615 * 28 15 14 51 51 H 1.08998 * 109.49998 * 61.43628 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8266 -1.1904 6 6 4.2257 -1.9490 -0.5842 7 6 5.6664 -1.4370 -0.3632 8 6 5.7779 -0.3342 -1.4413 9 6 4.3472 0.0898 -1.6900 10 8 4.0130 1.1093 -2.2555 11 7 2.0182 -0.6906 1.1962 12 6 2.1469 -0.0182 2.3571 13 8 1.8573 1.1614 2.4119 14 7 2.6014 -0.6522 3.4563 15 6 2.7470 0.0802 4.7167 16 6 4.1041 0.7873 4.7417 17 6 4.2383 1.5802 6.0456 18 7 4.0109 0.6710 7.1772 19 6 4.9315 0.5684 8.1857 20 1 5.9752 0.7606 7.9856 21 6 4.5232 0.2174 9.4652 22 7 3.2530 0.3068 9.7983 23 14 5.7765 -0.3818 10.7139 24 1 7.1265 -0.3906 10.0954 25 1 5.7769 0.5257 11.8894 26 1 5.4224 -1.7565 11.1501 27 6 2.7770 -0.1263 7.2059 28 6 2.6592 -0.8998 5.8889 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -1.7199 -1.2951 33 1 1.7517 -0.1585 -2.1369 34 1 3.7718 -2.2209 0.3688 35 1 4.2275 -2.8052 -1.2586 36 1 5.7826 -1.0184 0.6364 37 1 6.3934 -2.2298 -0.5394 38 1 6.3680 0.5038 -1.0702 39 1 6.2190 -0.7358 -2.3537 40 1 2.2489 -1.6318 1.1528 41 1 2.8321 -1.5933 3.4127 42 1 1.9506 0.8197 4.8011 43 1 4.9014 0.0464 4.6825 44 1 4.1754 1.4678 3.8933 45 1 3.4980 2.3800 6.0650 46 1 5.2390 2.0067 6.1150 47 1 2.9677 0.0612 10.6922 48 1 1.9177 0.5344 7.3199 49 1 2.8120 -0.8275 8.0397 50 1 1.7019 -1.4202 5.8571 51 1 3.4702 -1.6246 5.8188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:01 Heat of formation + Delta-G solvation = -68.709303 kcal Electronic energy + Delta-G solvation = -30695.053491 eV Core-core repulsion = 26628.716003 eV Total energy + Delta-G solvation = -4066.337488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64766 -40.98657 -39.20854 -37.73430 -36.80154 -35.87860 -34.14655 -33.32185 -31.99148 -31.52942 -30.57349 -28.46972 -27.25297 -26.86408 -24.18453 -23.81774 -22.84662 -22.63429 -21.66691 -21.05107 -20.51079 -19.47485 -18.62237 -17.84024 -17.59615 -17.33024 -16.88310 -16.57771 -16.14283 -15.89905 -15.44248 -15.33401 -15.24164 -14.97897 -14.83091 -14.74344 -14.40205 -14.39921 -14.06015 -13.91988 -13.60272 -13.27991 -13.17269 -13.06307 -12.99099 -12.87083 -12.61987 -12.51180 -12.36985 -12.21674 -12.11652 -11.98479 -11.87189 -11.83872 -11.54640 -11.38442 -11.19494 -10.87447 -10.56437 -10.36037 -9.84739 -9.59411 -8.70996 -7.87411 -5.33445 1.48478 1.50524 1.52735 1.61425 1.66331 2.06197 2.21716 2.52655 3.24138 3.32231 3.43923 3.63670 3.66231 3.72366 3.91018 4.02854 4.06394 4.08131 4.19281 4.28934 4.34749 4.46446 4.50054 4.59256 4.64793 4.65326 4.72467 4.76805 4.82128 4.85309 4.89355 4.95580 5.06022 5.06378 5.09014 5.16506 5.21798 5.24620 5.29181 5.47067 5.52133 5.59969 5.62218 5.65455 5.71158 6.06052 6.10538 6.39360 7.13375 7.14799 7.17129 7.65834 7.83794 8.37283 9.19923 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017378 B = 0.002550 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.887152 B =10979.018593 C =11807.356586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 H 0.043 0.957 4 C 0.123 3.877 5 N -0.614 5.614 6 C 0.098 3.902 7 C -0.126 4.126 8 C -0.153 4.153 9 C 0.500 3.500 10 O -0.590 6.590 11 N -0.720 5.720 12 C 0.700 3.300 13 O -0.640 6.640 14 N -0.723 5.723 15 C 0.183 3.817 16 C -0.120 4.120 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.296 1.296 26 H -0.286 1.286 27 C 0.179 3.821 28 C -0.125 4.125 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.409 0.591 41 H 0.410 0.590 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.002 0.998 46 H 0.056 0.944 47 H 0.251 0.749 48 H -0.009 1.009 49 H 0.065 0.935 50 H 0.077 0.923 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 -14.201 -25.004 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.061 0.939 4 C 0.000 4.000 5 N -0.346 5.346 6 C -0.024 4.024 7 C -0.163 4.163 8 C -0.193 4.193 9 C 0.289 3.711 10 O -0.471 6.471 11 N -0.378 5.378 12 C 0.400 3.600 13 O -0.521 6.521 14 N -0.378 5.378 15 C 0.077 3.923 16 C -0.161 4.161 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.798 3.202 24 H -0.190 1.190 25 H -0.223 1.223 26 H -0.213 1.213 27 C 0.053 3.947 28 C -0.165 4.165 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.142 0.858 40 H 0.247 0.753 41 H 0.247 0.753 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.020 0.980 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.009 0.991 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.147 -12.666 -25.111 28.125 hybrid contribution 0.368 -0.091 1.145 1.207 sum 0.221 -12.757 -23.966 27.150 Atomic orbital electron populations 1.22079 0.93612 1.03603 1.02118 1.21187 0.94856 0.96064 0.83899 0.93902 1.21806 0.78431 1.03517 0.96239 1.48381 1.06060 1.22601 1.57569 1.22448 0.91786 0.88643 0.99484 1.22628 0.96918 0.98486 0.98297 1.22364 0.92679 1.01454 1.02835 1.21687 0.90650 0.82083 0.76656 1.90699 1.83319 1.27530 1.45531 1.44977 1.71455 1.13825 1.07538 1.16183 0.77956 0.84627 0.81259 1.90915 1.59081 1.16976 1.85164 1.45058 1.70207 1.14136 1.08413 1.20444 0.96434 0.93537 0.81886 1.22145 0.97544 0.99454 0.96928 1.20955 0.98393 0.91426 0.87418 1.44360 1.21372 1.45298 1.22145 1.19560 0.89178 1.42390 0.88171 0.91440 1.25837 0.97864 1.02302 0.98536 1.70199 1.16359 1.52094 1.19564 0.85173 0.79134 0.77364 0.78535 1.18974 1.22314 1.21255 1.20564 0.86343 0.92985 0.94845 1.22239 1.02201 0.97847 0.94186 0.89564 0.94621 0.90379 0.85432 0.89186 0.89405 0.87786 0.91042 0.86069 0.88999 0.85847 0.75275 0.75310 0.93271 0.91124 0.93081 0.98029 0.92505 0.94015 0.99131 0.91699 0.90476 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.48 71.98 0.68 -1.87 16 2 C 0.15 2.77 2.88 44.99 0.13 2.90 16 3 H 0.04 1.27 7.58 -2.39 -0.02 1.25 16 4 C 0.12 1.49 5.51 86.38 0.48 1.97 16 5 N -0.61 -8.40 2.75 -817.98 -2.25 -10.65 16 6 C 0.10 0.55 7.07 86.83 0.61 1.17 16 7 C -0.13 -0.88 7.18 31.65 0.23 -0.65 16 8 C -0.15 -1.94 6.86 30.59 0.21 -1.73 16 9 C 0.50 10.55 8.02 87.90 0.71 11.26 16 10 O -0.59 -18.77 17.59 -3.03 -0.05 -18.83 16 11 N -0.72 -12.80 4.51 -457.82 -2.06 -14.86 16 12 C 0.70 19.71 8.50 179.05 1.52 21.23 16 13 O -0.64 -25.62 15.67 -3.99 -0.06 -25.68 16 14 N -0.72 -18.06 5.08 -457.66 -2.33 -20.39 16 15 C 0.18 6.20 2.42 45.02 0.11 6.31 16 16 C -0.12 -4.36 5.65 30.67 0.17 -4.18 16 17 C 0.14 6.39 6.52 86.36 0.56 6.96 16 18 N -0.61 -30.76 2.99 -699.08 -2.09 -32.85 16 19 C -0.26 -14.38 9.58 84.03 0.81 -13.58 16 20 H 0.07 3.60 7.88 -2.92 -0.02 3.57 16 21 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 22 N -0.94 -55.04 11.19 21.65 0.24 -54.80 16 23 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 27 C 0.18 8.50 5.30 86.36 0.46 8.95 16 28 C -0.13 -4.31 5.55 30.67 0.17 -4.14 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.31 7.92 -2.39 -0.02 1.29 16 34 H 0.09 0.29 5.95 -2.39 -0.01 0.27 16 35 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.41 3.90 6.52 -92.71 -0.60 3.29 16 41 H 0.41 6.90 8.62 -92.71 -0.80 6.10 16 42 H 0.05 2.02 7.58 -2.38 -0.02 2.00 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 47 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 48 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 49 H 0.06 3.43 6.06 -2.39 -0.01 3.41 16 50 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 51 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -83.57 402.58 0.22 -83.35 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.47 Total: 16.36 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: 7.26 Total: 32.23 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -8.49 Total: -133.55 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.12 Total: -44.51 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -83.57 0.22 -83.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.645 kcal (2) G-P(sol) polarization free energy of solvation -83.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds