Wall clock time and date at job start Tue Mar 31 2020 21:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47394 * 2 1 4 4 N 1.46507 * 109.46835 * 240.00560 * 2 1 3 5 5 C 1.34778 * 119.99825 * 85.00132 * 4 2 1 6 6 O 1.21589 * 120.00080 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99842 * 180.02562 * 5 4 2 8 8 C 1.46494 * 119.99916 * 179.97438 * 7 5 4 9 9 C 1.53034 * 109.46155 * 275.02631 * 8 7 5 10 10 C 1.53194 * 109.31430 * 178.60271 * 9 8 7 11 11 N 1.46920 * 108.76725 * 54.65475 * 10 9 8 12 12 C 1.36943 * 120.63039 * 126.35981 * 11 10 9 13 13 H 1.07995 * 119.99599 * 204.40077 * 12 11 10 14 14 C 1.38805 * 119.99706 * 24.40484 * 12 11 10 15 15 N 1.31616 * 120.00752 * 31.09683 * 14 12 11 16 16 Si 1.86800 * 119.99659 * 211.09436 * 14 12 11 17 17 H 1.48506 * 109.47352 * 94.99110 * 16 14 12 18 18 H 1.48506 * 109.47228 * 214.98793 * 16 14 12 19 19 H 1.48506 * 109.47306 * 334.98842 * 16 14 12 20 20 C 1.46928 * 118.73927 * 306.38823 * 11 10 9 21 21 C 1.53042 * 109.46131 * 154.97024 * 8 7 5 22 22 C 1.50704 * 109.47471 * 120.00994 * 2 1 3 23 23 O 1.21269 * 120.00141 * 93.76467 * 22 2 1 24 24 N 1.34780 * 119.99202 * 273.76841 * 22 2 1 25 25 C 1.47019 * 125.65227 * 3.55364 * 24 22 2 26 26 C 1.54321 * 107.27357 * 180.96513 * 25 24 22 27 27 C 1.55164 * 102.86101 * 22.52963 * 26 25 24 28 28 C 1.47434 * 125.64108 * 183.86029 * 24 22 2 29 29 H 1.08999 * 109.47180 * 175.01277 * 1 2 3 30 30 H 1.08997 * 109.46636 * 295.01352 * 1 2 3 31 31 H 1.08998 * 109.46747 * 55.00768 * 1 2 3 32 32 H 0.97000 * 119.99936 * 264.99926 * 4 2 1 33 33 H 0.97003 * 119.99912 * 359.71968 * 7 5 4 34 34 H 1.09005 * 109.46229 * 35.00376 * 8 7 5 35 35 H 1.09004 * 109.49677 * 298.56950 * 9 8 7 36 36 H 1.08998 * 109.49886 * 58.66512 * 9 8 7 37 37 H 1.09003 * 109.59379 * 294.86609 * 10 9 8 38 38 H 1.09001 * 109.70424 * 174.50514 * 10 9 8 39 39 H 0.96992 * 120.00866 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.58243 * 293.81706 * 20 11 10 41 41 H 1.08997 * 109.70679 * 173.46651 * 20 11 10 42 42 H 1.09002 * 109.50014 * 301.34198 * 21 8 7 43 43 H 1.09005 * 109.49520 * 61.43565 * 21 8 7 44 44 H 1.08993 * 109.88455 * 300.51048 * 25 24 22 45 45 H 1.09001 * 109.88081 * 61.68072 * 25 24 22 46 46 H 1.08994 * 110.92794 * 264.11067 * 26 25 24 47 47 H 1.09004 * 110.58649 * 140.78268 * 26 25 24 48 48 H 1.09001 * 110.99593 * 206.22270 * 27 26 25 49 49 H 1.08998 * 111.00062 * 82.37700 * 27 26 25 50 50 H 1.08996 * 110.36676 * 274.67207 * 28 24 22 51 51 H 1.09001 * 110.36629 * 36.89055 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8574 1.1616 -2.4118 7 7 2.5957 -0.6534 -3.4579 8 6 2.7350 0.0774 -4.7198 9 6 1.3917 0.0899 -5.4528 10 6 1.5324 0.8846 -6.7550 11 7 2.6406 0.3191 -7.5364 12 6 2.4512 -0.0690 -8.8360 13 1 3.0966 -0.8145 -9.2764 14 6 1.4297 0.4960 -9.5871 15 7 1.0534 1.7364 -9.3587 16 14 0.5892 -0.5042 -10.9222 17 1 -0.6406 -1.1292 -10.3723 18 1 0.2280 0.3863 -12.0545 19 1 1.5118 -1.5647 -11.4012 20 6 3.9558 0.1773 -6.8969 21 6 3.7878 -0.6091 -5.5931 22 6 2.0324 -0.7106 1.2303 23 8 2.2996 -1.8925 1.1813 24 7 2.1847 -0.0325 2.3851 25 6 1.8307 1.3776 2.6039 26 6 2.2025 1.7226 4.0613 27 6 3.2724 0.6534 4.4072 28 6 2.7399 -0.5802 3.6363 29 1 -0.3633 -1.0238 -0.0893 30 1 -0.3632 0.4345 0.9313 31 1 -0.3633 0.5893 -0.8419 32 1 2.2490 -1.6317 -1.1528 33 1 2.8299 -1.5937 -3.4135 34 1 3.0460 1.1017 -4.5139 35 1 1.0923 -0.9330 -5.6811 36 1 0.6369 0.5580 -4.8210 37 1 1.7431 1.9290 -6.5249 38 1 0.6083 0.8161 -7.3290 39 1 0.3394 2.1311 -9.8833 40 1 4.3641 1.1640 -6.6785 41 1 4.6322 -0.3589 -7.5625 42 1 4.7387 -0.6388 -5.0610 43 1 3.4656 -1.6254 -5.8201 44 1 2.3908 2.0114 1.9165 45 1 0.7604 1.5187 2.4531 46 1 1.3369 1.6281 4.7168 47 1 2.6258 2.7253 4.1218 48 1 3.3005 0.4616 5.4798 49 1 4.2545 0.9502 4.0391 50 1 1.9596 -1.0790 4.2111 51 1 3.5523 -1.2737 3.4192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619588377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:50 Heat of formation + Delta-G solvation = -42.491409 kcal Electronic energy + Delta-G solvation = -29918.493929 eV Core-core repulsion = 25853.293335 eV Total energy + Delta-G solvation = -4065.200595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.81899 -39.75401 -37.98845 -37.38985 -35.10251 -34.28243 -32.55301 -32.01387 -30.68722 -29.94152 -29.49432 -29.00812 -25.51895 -24.87147 -23.28041 -22.24227 -21.99946 -21.59944 -20.53382 -19.76575 -19.46285 -18.48347 -17.18581 -17.01861 -16.76748 -16.39616 -15.43122 -15.23359 -14.86652 -14.80691 -14.47600 -14.15981 -13.96744 -13.84479 -13.69697 -13.51709 -13.28420 -13.16081 -12.97191 -12.72904 -12.53166 -12.47688 -12.33040 -11.91542 -11.82669 -11.75197 -11.44132 -11.28431 -11.27030 -10.89517 -10.69563 -10.38365 -10.23271 -10.19654 -10.09646 -9.99450 -9.70395 -9.53834 -9.25171 -9.12055 -8.57718 -8.33631 -6.76468 -5.81739 -3.10771 2.10929 2.34383 2.92781 3.36864 3.41248 3.50142 3.50964 3.86151 4.02274 4.27027 4.37048 4.38186 4.54053 4.70851 4.80897 4.86034 4.88643 5.08637 5.19528 5.26252 5.28678 5.30963 5.34509 5.37678 5.44190 5.48628 5.54002 5.60841 5.66104 5.79465 5.86767 5.92869 6.10150 6.26796 6.33718 6.37434 6.45347 6.60371 6.67514 6.77204 6.91687 6.95812 6.99803 7.12647 7.32159 7.56937 7.67353 7.85986 8.15553 8.41338 8.75173 9.19141 9.86945 10.43464 11.26914 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.001986 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.206551 B =14097.604816 C =14229.982202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.108 0.892 4 N -0.739 5.739 5 C 0.707 3.293 6 O -0.589 6.589 7 N -0.737 5.737 8 C 0.170 3.830 9 C -0.146 4.146 10 C 0.173 3.827 11 N -0.591 5.591 12 C -0.262 4.262 13 H 0.068 0.932 14 C 0.008 3.992 15 N -0.885 5.885 16 Si 0.887 3.113 17 H -0.288 1.288 18 H -0.293 1.293 19 H -0.278 1.278 20 C 0.149 3.851 21 C -0.139 4.139 22 C 0.530 3.470 23 O -0.535 6.535 24 N -0.617 5.617 25 C 0.092 3.908 26 C -0.132 4.132 27 C -0.135 4.135 28 C 0.105 3.895 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.403 0.597 33 H 0.392 0.608 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.079 0.921 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -2.482 29.340 29.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.126 0.874 4 N -0.397 5.397 5 C 0.406 3.594 6 O -0.467 6.467 7 N -0.390 5.390 8 C 0.066 3.934 9 C -0.186 4.186 10 C 0.047 3.953 11 N -0.314 5.314 12 C -0.391 4.391 13 H 0.086 0.914 14 C -0.192 4.192 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.215 1.215 18 H -0.220 1.220 19 H -0.203 1.203 20 C 0.022 3.978 21 C -0.179 4.179 22 C 0.318 3.682 23 O -0.412 6.412 24 N -0.353 5.353 25 C -0.030 4.030 26 C -0.169 4.169 27 C -0.173 4.173 28 C -0.018 4.018 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.239 0.761 33 H 0.225 0.775 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.095 -1.945 29.049 29.189 hybrid contribution -0.393 -1.317 -0.548 1.480 sum 1.702 -3.262 28.501 28.738 Atomic orbital electron populations 1.22123 0.92760 1.03471 1.03322 1.20466 0.95641 0.97421 0.82216 0.87392 1.44910 1.72547 1.14217 1.08034 1.15897 0.78360 0.85070 0.80027 1.90921 1.56956 1.14249 1.84586 1.45501 1.70331 1.13776 1.09416 1.20906 0.96465 0.95870 0.80179 1.22540 0.95786 1.01508 0.98769 1.20684 0.92988 0.93271 0.88367 1.44173 1.03821 1.73629 1.09757 1.19115 1.15516 1.16392 0.88090 0.91429 1.24844 1.02151 0.94764 0.97463 1.70241 1.29972 1.10213 1.42313 0.86507 0.80319 0.80276 0.81240 1.21498 1.21984 1.20327 1.20818 0.89135 0.96417 0.91410 1.22353 0.97017 1.00635 0.97916 1.20438 0.77315 0.86904 0.83552 1.90699 1.50847 1.15267 1.84346 1.48456 1.63256 1.12546 1.11001 1.22204 1.01089 0.81894 0.97857 1.22647 0.99479 0.99928 0.94896 1.22810 0.99111 0.94610 1.00745 1.22259 0.98514 0.96631 0.84350 0.91638 0.91527 0.90090 0.76085 0.77510 0.90010 0.92605 0.92706 0.96014 0.90305 0.93639 0.96192 0.92261 0.92586 0.91784 0.90640 0.90719 0.90267 0.89615 0.89565 0.90378 0.91254 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.47 37.16 0.35 -1.20 16 2 C 0.15 1.68 2.47 -69.08 -0.17 1.51 16 3 H 0.11 1.22 6.65 -51.93 -0.35 0.88 16 4 N -0.74 -9.23 5.06 -59.80 -0.30 -9.53 16 5 C 0.71 10.99 8.50 -86.91 -0.74 10.25 16 6 O -0.59 -11.25 15.67 5.29 0.08 -11.17 16 7 N -0.74 -10.83 5.08 -58.64 -0.30 -11.13 16 8 C 0.17 3.00 2.42 -67.89 -0.16 2.83 16 9 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 10 C 0.17 4.23 5.47 -3.71 -0.02 4.21 16 11 N -0.59 -14.82 3.00 -172.33 -0.52 -15.33 16 12 C -0.26 -7.22 9.51 -15.06 -0.14 -7.37 16 13 H 0.07 1.83 7.98 -52.49 -0.42 1.41 16 14 C 0.01 0.22 4.53 -17.43 -0.08 0.14 16 15 N -0.88 -26.10 11.92 55.49 0.66 -25.44 16 16 Si 0.89 21.72 29.65 -169.99 -5.04 16.68 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 C 0.15 3.09 6.51 -3.71 -0.02 3.07 16 21 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 22 C 0.53 5.82 7.05 -10.98 -0.08 5.74 16 23 O -0.54 -7.41 16.31 5.57 0.09 -7.32 16 24 N -0.62 -5.10 3.33 -170.52 -0.57 -5.67 16 25 C 0.09 0.52 6.27 -3.07 -0.02 0.50 16 26 C -0.13 -0.47 6.95 -24.89 -0.17 -0.64 16 27 C -0.13 -0.54 7.08 -24.58 -0.17 -0.71 16 28 C 0.10 0.69 6.89 -2.53 -0.02 0.68 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.50 7.31 -51.93 -0.38 0.12 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.40 4.63 7.81 -40.82 -0.32 4.31 16 33 H 0.39 4.70 8.61 -40.82 -0.35 4.35 16 34 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 2.13 6.24 -51.93 -0.32 1.81 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.19 7.92 -51.93 -0.41 0.77 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 0.43 7.71 -51.93 -0.40 0.03 16 45 H 0.07 0.36 7.31 -51.93 -0.38 -0.02 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -34.28 403.01 -10.34 -44.61 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.77 Total: 4.79 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -1.75 Total: 13.43 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.02 Total: -67.10 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.17 Total: -18.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.04 Total: 16.68 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.28 -10.34 -44.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619588377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.123 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds