Wall clock time and date at job start Tue Mar 31 2020 21:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47394 * 2 1 4 4 N 1.46507 * 109.46835 * 240.00560 * 2 1 3 5 5 C 1.34778 * 119.99825 * 85.00132 * 4 2 1 6 6 O 1.21589 * 120.00080 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99842 * 180.02562 * 5 4 2 8 8 C 1.46494 * 119.99916 * 179.97438 * 7 5 4 9 9 C 1.53034 * 109.46155 * 275.02631 * 8 7 5 10 10 C 1.53194 * 109.31430 * 178.60271 * 9 8 7 11 11 N 1.46920 * 108.76725 * 54.65475 * 10 9 8 12 12 C 1.36943 * 120.63039 * 126.35981 * 11 10 9 13 13 H 1.07995 * 119.99599 * 204.40077 * 12 11 10 14 14 C 1.38805 * 119.99706 * 24.40484 * 12 11 10 15 15 N 1.31616 * 120.00752 * 31.09683 * 14 12 11 16 16 Si 1.86800 * 119.99659 * 211.09436 * 14 12 11 17 17 H 1.48506 * 109.47352 * 94.99110 * 16 14 12 18 18 H 1.48506 * 109.47228 * 214.98793 * 16 14 12 19 19 H 1.48506 * 109.47306 * 334.98842 * 16 14 12 20 20 C 1.46928 * 118.73927 * 306.38823 * 11 10 9 21 21 C 1.53042 * 109.46131 * 154.97024 * 8 7 5 22 22 C 1.50704 * 109.47471 * 120.00994 * 2 1 3 23 23 O 1.21269 * 120.00141 * 93.76467 * 22 2 1 24 24 N 1.34780 * 119.99202 * 273.76841 * 22 2 1 25 25 C 1.47019 * 125.65227 * 3.55364 * 24 22 2 26 26 C 1.54321 * 107.27357 * 180.96513 * 25 24 22 27 27 C 1.55164 * 102.86101 * 22.52963 * 26 25 24 28 28 C 1.47434 * 125.64108 * 183.86029 * 24 22 2 29 29 H 1.08999 * 109.47180 * 175.01277 * 1 2 3 30 30 H 1.08997 * 109.46636 * 295.01352 * 1 2 3 31 31 H 1.08998 * 109.46747 * 55.00768 * 1 2 3 32 32 H 0.97000 * 119.99936 * 264.99926 * 4 2 1 33 33 H 0.97003 * 119.99912 * 359.71968 * 7 5 4 34 34 H 1.09005 * 109.46229 * 35.00376 * 8 7 5 35 35 H 1.09004 * 109.49677 * 298.56950 * 9 8 7 36 36 H 1.08998 * 109.49886 * 58.66512 * 9 8 7 37 37 H 1.09003 * 109.59379 * 294.86609 * 10 9 8 38 38 H 1.09001 * 109.70424 * 174.50514 * 10 9 8 39 39 H 0.96992 * 120.00866 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.58243 * 293.81706 * 20 11 10 41 41 H 1.08997 * 109.70679 * 173.46651 * 20 11 10 42 42 H 1.09002 * 109.50014 * 301.34198 * 21 8 7 43 43 H 1.09005 * 109.49520 * 61.43565 * 21 8 7 44 44 H 1.08993 * 109.88455 * 300.51048 * 25 24 22 45 45 H 1.09001 * 109.88081 * 61.68072 * 25 24 22 46 46 H 1.08994 * 110.92794 * 264.11067 * 26 25 24 47 47 H 1.09004 * 110.58649 * 140.78268 * 26 25 24 48 48 H 1.09001 * 110.99593 * 206.22270 * 27 26 25 49 49 H 1.08998 * 111.00062 * 82.37700 * 27 26 25 50 50 H 1.08996 * 110.36676 * 274.67207 * 28 24 22 51 51 H 1.09001 * 110.36629 * 36.89055 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8574 1.1616 -2.4118 7 7 2.5957 -0.6534 -3.4579 8 6 2.7350 0.0774 -4.7198 9 6 1.3917 0.0899 -5.4528 10 6 1.5324 0.8846 -6.7550 11 7 2.6406 0.3191 -7.5364 12 6 2.4512 -0.0690 -8.8360 13 1 3.0966 -0.8145 -9.2764 14 6 1.4297 0.4960 -9.5871 15 7 1.0534 1.7364 -9.3587 16 14 0.5892 -0.5042 -10.9222 17 1 -0.6406 -1.1292 -10.3723 18 1 0.2280 0.3863 -12.0545 19 1 1.5118 -1.5647 -11.4012 20 6 3.9558 0.1773 -6.8969 21 6 3.7878 -0.6091 -5.5931 22 6 2.0324 -0.7106 1.2303 23 8 2.2996 -1.8925 1.1813 24 7 2.1847 -0.0325 2.3851 25 6 1.8307 1.3776 2.6039 26 6 2.2025 1.7226 4.0613 27 6 3.2724 0.6534 4.4072 28 6 2.7399 -0.5802 3.6363 29 1 -0.3633 -1.0238 -0.0893 30 1 -0.3632 0.4345 0.9313 31 1 -0.3633 0.5893 -0.8419 32 1 2.2490 -1.6317 -1.1528 33 1 2.8299 -1.5937 -3.4135 34 1 3.0460 1.1017 -4.5139 35 1 1.0923 -0.9330 -5.6811 36 1 0.6369 0.5580 -4.8210 37 1 1.7431 1.9290 -6.5249 38 1 0.6083 0.8161 -7.3290 39 1 0.3394 2.1311 -9.8833 40 1 4.3641 1.1640 -6.6785 41 1 4.6322 -0.3589 -7.5625 42 1 4.7387 -0.6388 -5.0610 43 1 3.4656 -1.6254 -5.8201 44 1 2.3908 2.0114 1.9165 45 1 0.7604 1.5187 2.4531 46 1 1.3369 1.6281 4.7168 47 1 2.6258 2.7253 4.1218 48 1 3.3005 0.4616 5.4798 49 1 4.2545 0.9502 4.0391 50 1 1.9596 -1.0790 4.2111 51 1 3.5523 -1.2737 3.4192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619588377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:49 Heat of formation + Delta-G solvation = -66.523458 kcal Electronic energy + Delta-G solvation = -29919.536037 eV Core-core repulsion = 25853.293335 eV Total energy + Delta-G solvation = -4066.242703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.73844 -40.85287 -39.18466 -38.47046 -36.33217 -35.76850 -34.03724 -33.02033 -31.94153 -31.57111 -30.60307 -29.84451 -26.93499 -26.09737 -24.27625 -23.93622 -23.34491 -22.13489 -21.71884 -21.06595 -20.58052 -19.60365 -18.74211 -17.89011 -17.84630 -17.40054 -16.78386 -16.49062 -16.25806 -15.90039 -15.69747 -15.45907 -15.39476 -14.99862 -14.75028 -14.55156 -14.43980 -14.28025 -14.09237 -13.90552 -13.80124 -13.34947 -13.23589 -13.21883 -13.12190 -12.75706 -12.61343 -12.58272 -12.19182 -12.14617 -12.13719 -12.05655 -11.85472 -11.59624 -11.52286 -11.46014 -11.23371 -11.07175 -10.51563 -10.39886 -9.85411 -9.77238 -8.81521 -7.92891 -5.24777 1.21919 1.46247 1.49872 1.51023 1.58571 1.96266 2.15053 2.52501 3.16562 3.21898 3.24576 3.65116 3.66042 3.78624 3.88181 3.95145 3.99104 4.07770 4.09831 4.28749 4.34381 4.46133 4.46740 4.53204 4.64160 4.65763 4.69182 4.78794 4.83592 4.84950 4.93865 4.97645 5.03637 5.08897 5.09767 5.12470 5.13245 5.20424 5.30149 5.31471 5.37669 5.39208 5.57903 5.60017 5.70507 5.94620 6.29560 6.33712 6.87242 7.03586 7.10187 7.53658 7.84314 8.37291 9.14650 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.001986 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.206551 B =14097.604816 C =14229.982202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 H 0.106 0.894 4 N -0.727 5.727 5 C 0.706 3.294 6 O -0.626 6.626 7 N -0.725 5.725 8 C 0.182 3.818 9 C -0.129 4.129 10 C 0.182 3.818 11 N -0.607 5.607 12 C -0.268 4.268 13 H 0.073 0.927 14 C -0.046 4.046 15 N -0.925 5.925 16 Si 0.954 3.046 17 H -0.289 1.289 18 H -0.298 1.298 19 H -0.264 1.264 20 C 0.142 3.858 21 C -0.122 4.122 22 C 0.529 3.471 23 O -0.571 6.571 24 N -0.614 5.614 25 C 0.082 3.918 26 C -0.124 4.124 27 C -0.127 4.127 28 C 0.097 3.903 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.409 0.591 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.048 0.952 37 H -0.006 1.006 38 H 0.046 0.954 39 H 0.250 0.750 40 H 0.013 0.987 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 -3.773 31.459 31.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.123 0.877 4 N -0.385 5.385 5 C 0.406 3.594 6 O -0.507 6.507 7 N -0.379 5.379 8 C 0.077 3.923 9 C -0.170 4.170 10 C 0.055 3.945 11 N -0.331 5.331 12 C -0.398 4.398 13 H 0.091 0.909 14 C -0.243 4.243 15 N -0.570 5.570 16 Si 0.782 3.218 17 H -0.216 1.216 18 H -0.225 1.225 19 H -0.189 1.189 20 C 0.016 3.984 21 C -0.161 4.161 22 C 0.317 3.683 23 O -0.450 6.450 24 N -0.348 5.348 25 C -0.040 4.040 26 C -0.162 4.162 27 C -0.165 4.165 28 C -0.025 4.025 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.246 0.754 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.012 0.988 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.117 0.883 48 H 0.125 0.875 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.702 -3.272 31.237 31.524 hybrid contribution -0.520 -0.855 -1.116 1.499 sum 2.181 -4.127 30.121 30.481 Atomic orbital electron populations 1.22056 0.91777 1.03213 1.03932 1.20583 0.96400 0.97085 0.81791 0.87669 1.44798 1.71653 1.14435 1.07580 1.15978 0.78054 0.84635 0.80712 1.90904 1.58516 1.16023 1.85240 1.45132 1.70195 1.14429 1.08187 1.20532 0.95071 0.95486 0.81252 1.22295 0.97394 1.00642 0.96626 1.20437 0.91614 0.92612 0.89810 1.44424 1.05591 1.73607 1.09440 1.19472 1.15395 1.15857 0.89032 0.90948 1.25618 1.03036 0.95471 1.00188 1.70353 1.30696 1.11822 1.44080 0.85458 0.79137 0.78778 0.78424 1.21576 1.22500 1.18858 1.21025 0.87244 0.96875 0.93240 1.22147 0.98327 0.99974 0.95700 1.20318 0.77310 0.86474 0.84169 1.90678 1.52744 1.16587 1.84996 1.48568 1.61949 1.13593 1.10668 1.22471 1.01814 0.80228 0.99481 1.22670 0.99812 1.00343 0.93365 1.22803 0.98903 0.93276 1.01486 1.22449 0.98340 0.97759 0.83963 0.91825 0.88987 0.91826 0.75250 0.75447 0.92146 0.92077 0.93321 0.98792 0.93589 0.94084 0.96861 0.91407 0.89148 0.90682 0.90834 0.89643 0.88978 0.88259 0.87524 0.90725 0.90546 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.47 71.98 0.68 -2.15 16 2 C 0.15 3.20 2.47 44.25 0.11 3.31 16 3 H 0.11 2.32 6.65 -2.39 -0.02 2.31 16 4 N -0.73 -17.49 5.06 -461.38 -2.33 -19.82 16 5 C 0.71 21.38 8.50 179.05 1.52 22.90 16 6 O -0.63 -23.92 15.67 -4.00 -0.06 -23.98 16 7 N -0.73 -20.08 5.08 -457.69 -2.33 -22.41 16 8 C 0.18 6.24 2.42 45.02 0.11 6.35 16 9 C -0.13 -5.22 5.65 30.67 0.17 -5.04 16 10 C 0.18 9.16 5.47 86.36 0.47 9.64 16 11 N -0.61 -30.67 3.00 -699.12 -2.10 -32.77 16 12 C -0.27 -14.79 9.51 84.03 0.80 -13.99 16 13 H 0.07 3.86 7.98 -2.91 -0.02 3.84 16 14 C -0.05 -2.64 4.53 84.86 0.38 -2.26 16 15 N -0.92 -56.28 11.92 21.65 0.26 -56.03 16 16 Si 0.95 45.23 29.65 68.60 2.03 47.26 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 18 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.14 5.74 6.51 86.36 0.56 6.31 16 21 C -0.12 -3.81 5.55 30.67 0.17 -3.64 16 22 C 0.53 11.17 7.05 87.66 0.62 11.79 16 23 O -0.57 -15.52 16.31 -3.00 -0.05 -15.57 16 24 N -0.61 -9.34 3.33 -811.81 -2.70 -12.04 16 25 C 0.08 0.76 6.27 86.73 0.54 1.30 16 26 C -0.12 -0.53 6.95 31.78 0.22 -0.31 16 27 C -0.13 -0.72 7.08 31.99 0.23 -0.49 16 28 C 0.10 1.15 6.89 86.85 0.60 1.74 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.22 7.31 -2.39 -0.02 1.20 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.41 8.90 7.81 -92.71 -0.72 8.18 16 33 H 0.41 8.70 8.61 -92.71 -0.80 7.90 16 34 H 0.06 2.39 7.58 -2.38 -0.02 2.37 16 35 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.05 2.59 6.24 -2.39 -0.01 2.57 16 39 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.07 2.61 7.92 -2.39 -0.02 2.59 16 42 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.07 0.73 7.71 -2.39 -0.02 0.71 16 45 H 0.09 0.62 7.31 -2.39 -0.02 0.60 16 46 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.06 0.96 8.07 -2.39 -0.02 0.94 16 Total: -1.00 -76.13 403.01 -0.68 -76.81 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.59 Total: 23.07 kcal Atomic # 6 Polarization: 28.28 SS G_CDS: 7.19 Total: 35.47 kcal Atomic # 7 Polarization: -133.86 SS G_CDS: -9.20 Total: -143.06 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.11 Total: -39.55 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -76.13 -0.68 -76.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619588377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.285 kcal (2) G-P(sol) polarization free energy of solvation -76.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds