Wall clock time and date at job start Tue Mar 31 2020 22:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48559 * 111.00098 * 2 1 4 4 C 1.54371 * 104.59504 * 200.95667 * 3 2 1 5 5 C 1.54258 * 105.06225 * 23.85314 * 4 3 2 6 6 C 1.48560 * 110.99967 * 244.57954 * 2 1 3 7 7 H 1.08994 * 110.50923 * 40.21406 * 6 2 1 8 8 C 1.50698 * 110.41262 * 277.81906 * 6 2 1 9 9 O 1.21291 * 119.99995 * 344.82601 * 8 6 2 10 10 N 1.34776 * 120.00199 * 164.82748 * 8 6 2 11 11 C 1.47079 * 120.88161 * 180.02562 * 10 8 6 12 12 C 1.53250 * 108.51805 * 231.20742 * 11 10 8 13 13 N 1.46895 * 109.33763 * 306.16791 * 12 11 10 14 14 C 1.46904 * 110.99932 * 187.25257 * 13 12 11 15 15 C 1.50700 * 109.47192 * 170.00207 * 14 13 12 16 16 O 1.21283 * 119.99803 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.46497 * 119.99525 * 179.72583 * 17 15 14 19 19 C 1.50706 * 109.47174 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99324 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00250 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00272 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99956 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46908 * 59.99984 * 23 21 19 25 25 H 1.48496 * 109.47029 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46801 * 300.00241 * 23 21 19 27 27 C 1.46904 * 111.27063 * 63.10898 * 13 12 11 28 28 C 1.47076 * 120.87726 * 0.02562 * 10 8 6 29 29 H 1.09000 * 109.47530 * 175.42185 * 1 2 3 30 30 H 1.09003 * 109.47553 * 295.41800 * 1 2 3 31 31 H 1.09003 * 109.47294 * 55.41960 * 1 2 3 32 32 H 1.09006 * 110.40679 * 82.17970 * 3 2 1 33 33 H 1.08994 * 110.41273 * 319.73721 * 3 2 1 34 34 H 1.09004 * 110.32910 * 264.95623 * 4 3 2 35 35 H 1.09004 * 110.32618 * 142.75004 * 4 3 2 36 36 H 1.09004 * 110.32843 * 241.10588 * 5 4 3 37 37 H 1.09003 * 110.41283 * 118.93686 * 5 4 3 38 38 H 1.08999 * 109.62819 * 111.50188 * 11 10 8 39 39 H 1.08999 * 109.79304 * 351.00907 * 11 10 8 40 40 H 1.09004 * 109.48752 * 186.21369 * 12 11 10 41 41 H 1.09000 * 109.51643 * 66.14480 * 12 11 10 42 42 H 1.09009 * 109.46542 * 50.00238 * 14 13 12 43 43 H 1.08998 * 109.47050 * 290.00772 * 14 13 12 44 44 H 0.97000 * 119.99894 * 359.71837 * 17 15 14 45 45 H 1.08995 * 109.47421 * 299.99467 * 18 17 15 46 46 H 1.09001 * 109.47621 * 60.00103 * 18 17 15 47 47 H 0.96998 * 120.00722 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.48854 * 56.85036 * 27 13 12 49 49 H 1.08992 * 109.49862 * 176.92953 * 27 13 12 50 50 H 1.08996 * 109.63190 * 248.50011 * 28 10 8 51 51 H 1.09000 * 109.63486 * 8.89037 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5343 5 6 3.4433 -0.0539 -1.3584 6 6 2.0013 -0.5953 -1.2526 7 1 1.4104 -0.2730 -2.1099 8 6 2.0103 -2.0993 -1.1574 9 8 1.8828 -2.6394 -0.0789 10 7 2.1600 -2.8442 -2.2706 11 6 2.1710 -4.3132 -2.2001 12 6 3.4122 -4.8267 -2.9380 13 7 3.4350 -4.2698 -4.2972 14 6 4.5131 -4.8704 -5.0941 15 6 4.3566 -4.4653 -6.5372 16 8 3.4377 -3.7466 -6.8690 17 7 5.2347 -4.9059 -7.4598 18 6 5.0791 -4.5169 -8.8635 19 6 6.1822 -5.1370 -9.6820 20 1 6.9246 -5.7591 -9.2041 21 6 6.2430 -4.9112 -11.0407 22 7 5.3387 -4.1541 -11.6226 23 14 7.6100 -5.6805 -12.0552 24 1 7.5395 -7.1593 -11.9401 25 1 7.4523 -5.2861 -13.4781 26 1 8.9250 -5.2071 -11.5535 27 6 3.5525 -2.8057 -4.2714 28 6 2.3167 -2.2095 -3.5881 29 1 -0.3634 -1.0244 -0.0820 30 1 -0.3634 0.4411 0.9282 31 1 -0.3634 0.5833 -0.8461 32 1 2.0078 1.7916 1.0121 33 1 1.4099 2.0212 -0.6602 34 1 4.1483 1.1748 0.2936 35 1 3.6937 2.0995 -1.1698 36 1 4.1483 -0.7694 -0.9350 37 1 3.6943 0.1537 -2.3986 38 1 1.2731 -4.7093 -2.6743 39 1 2.2062 -4.6325 -1.1585 40 1 3.3793 -5.9149 -2.9913 41 1 4.3090 -4.5156 -2.4023 42 1 4.4623 -5.9564 -5.0140 43 1 5.4768 -4.5233 -4.7216 44 1 5.9698 -5.4804 -7.1942 45 1 4.1139 -4.8641 -9.2320 46 1 5.1311 -3.4314 -8.9478 47 1 5.3816 -3.9949 -12.5785 48 1 4.4472 -2.5224 -3.7169 49 1 3.6216 -2.4283 -5.2915 50 1 1.4328 -2.4037 -4.1955 51 1 2.4465 -1.1344 -3.4636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766145137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:43 Heat of formation + Delta-G solvation = -44.112728 kcal Electronic energy + Delta-G solvation = -30052.269926 eV Core-core repulsion = 25986.999026 eV Total energy + Delta-G solvation = -4065.270900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78825 -39.41986 -38.43490 -37.30648 -34.68911 -34.12383 -32.58544 -32.37115 -31.56264 -29.96274 -29.02935 -27.21461 -26.03964 -25.08279 -24.00200 -22.76495 -22.22148 -21.38105 -20.90434 -19.73030 -18.92440 -17.75770 -17.16593 -16.48648 -16.22030 -15.79757 -15.49030 -15.41771 -15.32972 -14.96019 -14.73295 -14.58498 -14.32939 -14.30300 -14.15052 -13.80618 -13.50992 -13.16685 -12.82366 -12.72950 -12.46512 -12.30062 -12.09718 -11.95854 -11.91479 -11.80756 -11.66545 -11.51926 -11.44028 -11.36099 -11.11147 -11.01545 -11.00384 -10.84579 -10.34424 -9.85237 -9.44932 -9.20671 -8.83308 -8.79506 -8.74942 -8.30009 -7.90876 -6.20109 -4.27292 2.45382 2.66335 3.22478 3.27533 3.28731 3.31325 3.54620 3.67541 4.12840 4.18242 4.20379 4.35993 4.51084 4.53865 4.75539 4.76226 4.85195 5.00150 5.03127 5.04817 5.06150 5.11801 5.14853 5.16183 5.24383 5.32313 5.38748 5.40959 5.44559 5.50882 5.53907 5.58432 5.59935 5.66265 5.69386 5.74964 5.88163 5.91825 6.24945 6.41307 6.57374 6.80185 6.97195 7.24867 7.28034 7.39728 7.47767 7.63116 7.93445 8.06068 8.58521 8.74568 9.06452 9.39528 10.89933 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.002021 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.705103 B =13853.974367 C =14485.595218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.491 5.491 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.113 4.113 6 C 0.042 3.958 7 H 0.076 0.924 8 C 0.525 3.475 9 O -0.523 6.523 10 N -0.615 5.615 11 C 0.119 3.881 12 C 0.042 3.958 13 N -0.518 5.518 14 C 0.036 3.964 15 C 0.499 3.501 16 O -0.540 6.540 17 N -0.714 5.714 18 C 0.252 3.748 19 C -0.545 4.545 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.038 3.962 28 C 0.113 3.887 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.390 0.610 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.267 0.733 48 H 0.032 0.968 49 H 0.112 0.888 50 H 0.082 0.918 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 7.587 22.423 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.215 5.215 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.151 4.151 6 C -0.070 4.070 7 H 0.093 0.907 8 C 0.312 3.688 9 O -0.398 6.398 10 N -0.350 5.350 11 C -0.003 4.003 12 C -0.087 4.087 13 N -0.243 5.243 14 C -0.096 4.096 15 C 0.283 3.717 16 O -0.418 6.418 17 N -0.363 5.363 18 C 0.131 3.869 19 C -0.583 4.583 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.523 5.523 23 Si 0.731 3.269 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.091 4.091 28 C -0.010 4.010 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.056 0.944 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.222 0.778 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.076 0.924 48 H 0.050 0.950 49 H 0.130 0.870 50 H 0.100 0.900 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.089 7.483 22.818 24.773 hybrid contribution 1.536 -0.113 -1.043 1.860 sum -4.553 7.370 21.774 23.434 Atomic orbital electron populations 1.22532 0.87323 1.02402 1.01121 1.65073 1.08603 1.14796 1.33072 1.23173 0.95223 0.89544 1.01670 1.22290 0.96789 0.97119 0.99859 1.22268 0.94141 0.97597 1.01133 1.22666 0.98168 0.92637 0.93489 0.90678 1.20257 0.76288 0.88688 0.83557 1.90683 1.48511 1.73317 1.27315 1.48239 1.72636 1.06939 1.07172 1.21659 0.98169 0.79011 1.01477 1.22517 0.97333 1.00266 0.88570 1.61537 1.45590 1.05389 1.11763 1.22021 0.93459 1.01129 0.92945 1.20269 0.82944 0.81526 0.86968 1.90618 1.32235 1.37505 1.81451 1.46469 1.28806 1.50529 1.10506 1.19077 0.97433 0.96131 0.74224 1.21191 1.11980 1.32088 0.93050 0.91974 1.24950 0.96338 0.95020 0.97696 1.69956 1.34193 1.36839 1.11265 0.86475 0.81820 0.79593 0.79024 1.20050 1.21062 1.20085 1.22659 0.95723 0.87682 1.03016 1.21917 0.99497 0.96856 0.82707 0.91086 0.90786 0.95274 0.89570 0.93480 0.90565 0.90715 0.90534 0.90162 0.90586 0.88726 0.89334 0.94443 0.88123 0.92388 0.77793 0.95514 0.95627 0.92368 0.95029 0.86977 0.89987 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.44 60.06 0.57 0.70 16 2 N -0.49 -4.96 4.92 -231.73 -1.14 -6.10 16 3 C 0.03 0.24 6.49 -2.19 -0.01 0.22 16 4 C -0.12 -0.84 7.00 -25.35 -0.18 -1.02 16 5 C -0.11 -0.93 6.12 -25.35 -0.16 -1.09 16 6 C 0.04 0.41 1.68 -67.22 -0.11 0.30 16 7 H 0.08 0.65 6.88 -51.93 -0.36 0.29 16 8 C 0.53 6.45 6.60 -10.99 -0.07 6.38 16 9 O -0.52 -8.21 16.02 5.55 0.09 -8.13 16 10 N -0.61 -6.91 3.01 -172.43 -0.52 -7.43 16 11 C 0.12 1.29 6.59 -3.60 -0.02 1.27 16 12 C 0.04 0.44 5.62 -3.70 -0.02 0.41 16 13 N -0.52 -6.68 4.37 -235.72 -1.03 -7.72 16 14 C 0.04 0.47 5.45 -4.97 -0.03 0.44 16 15 C 0.50 9.21 7.49 -10.98 -0.08 9.12 16 16 O -0.54 -11.94 14.33 5.55 0.08 -11.86 16 17 N -0.71 -14.19 5.55 -61.47 -0.34 -14.53 16 18 C 0.25 6.45 5.43 -5.19 -0.03 6.42 16 19 C -0.54 -14.41 9.28 -34.44 -0.32 -14.73 16 20 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 23 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.04 0.47 5.26 -3.68 -0.02 0.45 16 28 C 0.11 1.20 6.34 -3.58 -0.02 1.18 16 29 H 0.07 0.72 7.96 -51.93 -0.41 0.31 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.03 0.22 7.98 -51.93 -0.41 -0.20 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.30 7.90 -51.93 -0.41 -0.11 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 37 H 0.08 0.55 7.37 -51.93 -0.38 0.17 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.05 7.07 -51.93 -0.37 0.69 16 40 H 0.09 0.78 7.99 -51.93 -0.41 0.37 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 1.13 7.97 -51.92 -0.41 0.71 16 43 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 44 H 0.39 6.59 8.32 -40.82 -0.34 6.25 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.11 1.70 5.76 -51.93 -0.30 1.40 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.08 0.72 4.85 -51.93 -0.25 0.47 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -33.72 399.95 -10.38 -44.10 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.66 Total: 3.37 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.61 Total: 11.69 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -2.29 Total: -60.64 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.17 Total: -19.99 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.72 -10.38 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766145137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.012 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds