Wall clock time and date at job start Tue Mar 31 2020 22:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48559 * 111.00098 * 2 1 4 4 C 1.54371 * 104.59504 * 200.95667 * 3 2 1 5 5 C 1.54258 * 105.06225 * 23.85314 * 4 3 2 6 6 C 1.48560 * 110.99967 * 244.57954 * 2 1 3 7 7 H 1.08994 * 110.50923 * 40.21406 * 6 2 1 8 8 C 1.50698 * 110.41262 * 277.81906 * 6 2 1 9 9 O 1.21291 * 119.99995 * 344.82601 * 8 6 2 10 10 N 1.34776 * 120.00199 * 164.82748 * 8 6 2 11 11 C 1.47079 * 120.88161 * 180.02562 * 10 8 6 12 12 C 1.53250 * 108.51805 * 231.20742 * 11 10 8 13 13 N 1.46895 * 109.33763 * 306.16791 * 12 11 10 14 14 C 1.46904 * 110.99932 * 187.25257 * 13 12 11 15 15 C 1.50700 * 109.47192 * 170.00207 * 14 13 12 16 16 O 1.21283 * 119.99803 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.46497 * 119.99525 * 179.72583 * 17 15 14 19 19 C 1.50706 * 109.47174 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99324 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00250 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00272 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99956 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46908 * 59.99984 * 23 21 19 25 25 H 1.48496 * 109.47029 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46801 * 300.00241 * 23 21 19 27 27 C 1.46904 * 111.27063 * 63.10898 * 13 12 11 28 28 C 1.47076 * 120.87726 * 0.02562 * 10 8 6 29 29 H 1.09000 * 109.47530 * 175.42185 * 1 2 3 30 30 H 1.09003 * 109.47553 * 295.41800 * 1 2 3 31 31 H 1.09003 * 109.47294 * 55.41960 * 1 2 3 32 32 H 1.09006 * 110.40679 * 82.17970 * 3 2 1 33 33 H 1.08994 * 110.41273 * 319.73721 * 3 2 1 34 34 H 1.09004 * 110.32910 * 264.95623 * 4 3 2 35 35 H 1.09004 * 110.32618 * 142.75004 * 4 3 2 36 36 H 1.09004 * 110.32843 * 241.10588 * 5 4 3 37 37 H 1.09003 * 110.41283 * 118.93686 * 5 4 3 38 38 H 1.08999 * 109.62819 * 111.50188 * 11 10 8 39 39 H 1.08999 * 109.79304 * 351.00907 * 11 10 8 40 40 H 1.09004 * 109.48752 * 186.21369 * 12 11 10 41 41 H 1.09000 * 109.51643 * 66.14480 * 12 11 10 42 42 H 1.09009 * 109.46542 * 50.00238 * 14 13 12 43 43 H 1.08998 * 109.47050 * 290.00772 * 14 13 12 44 44 H 0.97000 * 119.99894 * 359.71837 * 17 15 14 45 45 H 1.08995 * 109.47421 * 299.99467 * 18 17 15 46 46 H 1.09001 * 109.47621 * 60.00103 * 18 17 15 47 47 H 0.96998 * 120.00722 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.48854 * 56.85036 * 27 13 12 49 49 H 1.08992 * 109.49862 * 176.92953 * 27 13 12 50 50 H 1.08996 * 109.63190 * 248.50011 * 28 10 8 51 51 H 1.09000 * 109.63486 * 8.89037 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5343 5 6 3.4433 -0.0539 -1.3584 6 6 2.0013 -0.5953 -1.2526 7 1 1.4104 -0.2730 -2.1099 8 6 2.0103 -2.0993 -1.1574 9 8 1.8828 -2.6394 -0.0789 10 7 2.1600 -2.8442 -2.2706 11 6 2.1710 -4.3132 -2.2001 12 6 3.4122 -4.8267 -2.9380 13 7 3.4350 -4.2698 -4.2972 14 6 4.5131 -4.8704 -5.0941 15 6 4.3566 -4.4653 -6.5372 16 8 3.4377 -3.7466 -6.8690 17 7 5.2347 -4.9059 -7.4598 18 6 5.0791 -4.5169 -8.8635 19 6 6.1822 -5.1370 -9.6820 20 1 6.9246 -5.7591 -9.2041 21 6 6.2430 -4.9112 -11.0407 22 7 5.3387 -4.1541 -11.6226 23 14 7.6100 -5.6805 -12.0552 24 1 7.5395 -7.1593 -11.9401 25 1 7.4523 -5.2861 -13.4781 26 1 8.9250 -5.2071 -11.5535 27 6 3.5525 -2.8057 -4.2714 28 6 2.3167 -2.2095 -3.5881 29 1 -0.3634 -1.0244 -0.0820 30 1 -0.3634 0.4411 0.9282 31 1 -0.3634 0.5833 -0.8461 32 1 2.0078 1.7916 1.0121 33 1 1.4099 2.0212 -0.6602 34 1 4.1483 1.1748 0.2936 35 1 3.6937 2.0995 -1.1698 36 1 4.1483 -0.7694 -0.9350 37 1 3.6943 0.1537 -2.3986 38 1 1.2731 -4.7093 -2.6743 39 1 2.2062 -4.6325 -1.1585 40 1 3.3793 -5.9149 -2.9913 41 1 4.3090 -4.5156 -2.4023 42 1 4.4623 -5.9564 -5.0140 43 1 5.4768 -4.5233 -4.7216 44 1 5.9698 -5.4804 -7.1942 45 1 4.1139 -4.8641 -9.2320 46 1 5.1311 -3.4314 -8.9478 47 1 5.3816 -3.9949 -12.5785 48 1 4.4472 -2.5224 -3.7169 49 1 3.6216 -2.4283 -5.2915 50 1 1.4328 -2.4037 -4.1955 51 1 2.4465 -1.1344 -3.4636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766145137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:42 Heat of formation + Delta-G solvation = -70.925108 kcal Electronic energy + Delta-G solvation = -30053.432598 eV Core-core repulsion = 25986.999026 eV Total energy + Delta-G solvation = -4066.433572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68020 -40.68017 -39.42066 -38.35955 -36.13669 -35.55385 -34.31196 -33.24220 -32.42123 -30.94194 -30.13657 -28.82622 -26.74852 -26.28983 -24.89283 -24.34923 -23.34905 -21.98515 -21.75310 -21.31951 -19.80661 -18.94446 -18.56520 -17.57273 -17.29038 -17.10915 -16.82628 -16.60953 -16.27521 -16.22236 -15.74663 -15.65763 -15.56348 -15.22170 -15.14447 -14.77926 -14.53395 -14.26499 -14.17566 -13.96454 -13.78438 -13.42788 -13.23099 -12.97364 -12.91421 -12.86235 -12.67011 -12.62945 -12.46537 -12.34469 -12.28332 -12.23205 -12.11617 -12.05743 -11.58649 -11.48606 -10.79829 -10.76858 -10.65143 -9.86269 -9.73027 -9.50928 -9.27330 -8.27417 -6.43552 1.44253 1.47711 1.52508 1.55834 1.79506 1.84363 2.28155 2.46634 2.95784 3.03320 3.07439 3.37154 3.55392 3.76654 3.86333 3.89068 3.96231 4.02011 4.15542 4.18845 4.24890 4.26597 4.37243 4.39407 4.43897 4.44473 4.51620 4.57710 4.67436 4.72271 4.80291 4.83728 4.85593 4.92173 4.97563 5.01989 5.07071 5.14629 5.19802 5.28723 5.38036 5.51802 5.69694 5.73159 5.85660 5.89008 5.94057 6.03608 6.34855 6.67869 6.98962 7.12788 7.26049 7.56866 8.84228 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.002021 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.705103 B =13853.974367 C =14485.595218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.518 5.518 3 C 0.032 3.968 4 C -0.119 4.119 5 C -0.112 4.112 6 C 0.043 3.957 7 H 0.088 0.912 8 C 0.523 3.477 9 O -0.563 6.563 10 N -0.612 5.612 11 C 0.117 3.883 12 C 0.050 3.950 13 N -0.537 5.537 14 C 0.050 3.950 15 C 0.496 3.504 16 O -0.581 6.581 17 N -0.711 5.711 18 C 0.270 3.730 19 C -0.556 4.556 20 H 0.083 0.917 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.982 3.018 24 H -0.263 1.263 25 H -0.287 1.287 26 H -0.262 1.262 27 C 0.041 3.959 28 C 0.120 3.880 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.043 0.957 42 H 0.130 0.870 43 H 0.085 0.915 44 H 0.407 0.593 45 H -0.014 1.014 46 H -0.012 1.012 47 H 0.268 0.732 48 H 0.043 0.957 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 7.247 23.297 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.242 5.242 3 C -0.095 4.095 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.069 4.069 7 H 0.105 0.895 8 C 0.312 3.688 9 O -0.441 6.441 10 N -0.346 5.346 11 C -0.006 4.006 12 C -0.078 4.078 13 N -0.262 5.262 14 C -0.080 4.080 15 C 0.283 3.717 16 O -0.461 6.461 17 N -0.362 5.362 18 C 0.147 3.853 19 C -0.594 4.594 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.087 4.087 28 C -0.003 4.003 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.061 0.939 42 H 0.147 0.853 43 H 0.102 0.898 44 H 0.243 0.757 45 H 0.004 0.996 46 H 0.006 0.994 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.101 0.899 50 H 0.090 0.910 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.326 7.124 23.728 25.149 hybrid contribution 0.908 0.016 -1.265 1.557 sum -3.418 7.139 22.463 23.817 Atomic orbital electron populations 1.22495 0.86980 1.01408 1.02220 1.65049 1.09236 1.16527 1.33437 1.23242 0.95523 0.88335 1.02430 1.22311 0.96456 0.97015 0.99923 1.22294 0.92645 0.97830 1.02240 1.22701 0.99413 0.90791 0.94000 0.89457 1.20749 0.75243 0.89832 0.83009 1.90658 1.50490 1.74250 1.28714 1.48297 1.71945 1.07215 1.07162 1.21696 0.98584 0.78943 1.01347 1.22511 0.97058 1.01326 0.86865 1.61491 1.45892 1.05657 1.13209 1.21936 0.94778 1.02728 0.88590 1.21271 0.81470 0.80074 0.88927 1.90608 1.33824 1.39097 1.82585 1.46197 1.30126 1.51261 1.08573 1.18473 0.95558 0.93694 0.77575 1.21609 1.12242 1.32021 0.93520 0.89878 1.26037 0.98965 0.95361 0.99242 1.70121 1.36520 1.38561 1.11666 0.85247 0.78529 0.78972 0.76718 1.18761 1.21247 1.18677 1.22537 0.96919 0.87747 1.01519 1.21879 0.98363 0.98010 0.82039 0.93149 0.89879 0.93900 0.89056 0.92171 0.90739 0.88745 0.92060 0.88615 0.90712 0.89076 0.87236 0.93888 0.85253 0.89758 0.75720 0.99633 0.99400 0.92311 0.93881 0.89916 0.91013 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.44 127.69 1.21 1.50 16 2 N -0.52 -9.97 4.92 -887.05 -4.36 -14.34 16 3 C 0.03 0.41 6.49 86.45 0.56 0.98 16 4 C -0.12 -1.40 7.00 31.49 0.22 -1.18 16 5 C -0.11 -1.66 6.12 31.49 0.19 -1.47 16 6 C 0.04 0.79 1.68 44.32 0.07 0.86 16 7 H 0.09 1.37 6.88 -2.39 -0.02 1.35 16 8 C 0.52 12.66 6.60 87.66 0.58 13.23 16 9 O -0.56 -17.86 16.02 -3.06 -0.05 -17.91 16 10 N -0.61 -13.32 3.01 -817.84 -2.46 -15.78 16 11 C 0.12 2.42 6.59 86.35 0.57 2.99 16 12 C 0.05 0.93 5.62 86.39 0.49 1.42 16 13 N -0.54 -12.96 4.37 -899.69 -3.93 -16.90 16 14 C 0.05 1.20 5.45 85.56 0.47 1.66 16 15 C 0.50 18.15 7.49 87.66 0.66 18.80 16 16 O -0.58 -26.45 14.33 -3.04 -0.04 -26.49 16 17 N -0.71 -28.13 5.55 -466.79 -2.59 -30.72 16 18 C 0.27 14.30 5.43 85.64 0.46 14.76 16 19 C -0.56 -29.42 9.28 25.60 0.24 -29.18 16 20 H 0.08 3.95 7.60 -2.91 -0.02 3.92 16 21 C 0.00 0.20 5.46 84.65 0.46 0.66 16 22 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 23 Si 0.98 41.45 29.54 68.60 2.03 43.47 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 27 C 0.04 0.99 5.26 86.40 0.45 1.44 16 28 C 0.12 2.45 6.34 86.36 0.55 3.00 16 29 H 0.05 1.04 7.96 -2.39 -0.02 1.02 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 0.58 7.98 -2.39 -0.02 0.56 16 32 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.06 0.63 7.90 -2.39 -0.02 0.61 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.06 1.10 7.85 -2.38 -0.02 1.08 16 37 H 0.10 1.10 7.37 -2.39 -0.02 1.08 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.98 7.07 -2.39 -0.02 1.97 16 40 H 0.11 1.59 7.99 -2.39 -0.02 1.57 16 41 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.13 2.41 7.97 -2.38 -0.02 2.39 16 43 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 44 H 0.41 13.10 8.32 -92.71 -0.77 12.32 16 45 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 46 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 47 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 48 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.08 2.53 5.76 -2.39 -0.01 2.51 16 50 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.11 1.67 4.85 -2.39 -0.01 1.66 16 Total: -1.00 -76.33 399.95 -3.80 -80.12 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.15 Total: 23.92 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 7.18 Total: 29.48 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -13.06 Total: -132.60 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.09 Total: -44.40 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -76.33 -3.80 -80.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766145137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.199 kcal (2) G-P(sol) polarization free energy of solvation -76.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds