Wall clock time and date at job start Tue Mar 31 2020 21:51:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42895 * 109.47297 * 2 1
4 4 C 1.42904 * 114.00109 * 180.02562 * 3 2 1
5 5 C 1.50694 * 109.47151 * 179.97438 * 4 3 2
6 6 N 1.30300 * 126.34460 * 89.97977 * 5 4 3
7 7 N 1.28528 * 110.05042 * 180.02562 * 6 5 4
8 8 C 1.31214 * 109.86107 * 359.97438 * 7 6 5
9 9 N 1.38583 * 126.46870 * 179.97438 * 8 7 6
10 10 C 1.46841 * 111.00157 * 35.84855 * 9 8 7
11 11 C 1.53042 * 109.52469 * 174.15836 * 10 9 8
12 12 C 1.53114 * 109.27495 * 59.17748 * 11 10 9
13 13 C 1.50701 * 109.51998 * 182.44045 * 12 11 10
14 14 H 1.08001 * 120.00007 * 119.68948 * 13 12 11
15 15 C 1.37875 * 120.00519 * 299.68659 * 13 12 11
16 16 N 1.31513 * 120.00667 * 180.02562 * 15 13 12
17 17 Si 1.86805 * 119.99804 * 359.97438 * 15 13 12
18 18 H 1.48507 * 109.47043 * 89.99712 * 17 15 13
19 19 H 1.48495 * 109.47315 * 210.00339 * 17 15 13
20 20 H 1.48504 * 109.47248 * 330.00295 * 17 15 13
21 21 C 1.53113 * 109.16504 * 302.34810 * 12 11 10
22 22 C 1.46852 * 110.99878 * 271.63782 * 9 8 7
23 23 N 1.36450 * 107.05461 * 0.22700 * 8 7 6
24 24 C 1.46500 * 127.13557 * 179.77704 * 23 8 7
25 25 C 1.53004 * 109.47242 * 88.44112 * 24 23 8
26 26 O 1.42896 * 109.47110 * 180.02562 * 25 24 23
27 27 C 1.42897 * 113.99706 * 180.02562 * 26 25 24
28 28 H 1.09002 * 109.47443 * 180.02562 * 1 2 3
29 29 H 1.09009 * 109.46644 * 299.99815 * 1 2 3
30 30 H 1.09000 * 109.47520 * 59.99798 * 1 2 3
31 31 H 1.09004 * 109.46617 * 239.99691 * 2 1 3
32 32 H 1.09003 * 109.46798 * 120.00206 * 2 1 3
33 33 H 1.09000 * 109.46780 * 59.99696 * 4 3 2
34 34 H 1.09006 * 109.46845 * 300.00431 * 4 3 2
35 35 H 1.09000 * 109.46702 * 294.17245 * 10 9 8
36 36 H 1.09002 * 109.46037 * 54.14515 * 10 9 8
37 37 H 1.08994 * 109.50293 * 179.12389 * 11 10 9
38 38 H 1.08999 * 109.50127 * 299.24037 * 11 10 9
39 39 H 1.09000 * 109.52348 * 62.25648 * 12 11 10
40 40 H 0.96997 * 120.00218 * 179.97438 * 16 15 13
41 41 H 1.09006 * 109.50381 * 297.71157 * 21 12 11
42 42 H 1.09004 * 109.50765 * 177.59692 * 21 12 11
43 43 H 1.08994 * 109.46084 * 305.85779 * 22 9 8
44 44 H 1.08998 * 109.46007 * 65.82826 * 22 9 8
45 45 H 1.09000 * 109.47261 * 208.44264 * 24 23 8
46 46 H 1.08996 * 109.47310 * 328.44554 * 24 23 8
47 47 H 1.09000 * 109.47116 * 300.00240 * 25 24 23
48 48 H 1.09001 * 109.47005 * 59.99773 * 25 24 23
49 49 H 1.09004 * 109.47103 * 299.99153 * 27 26 25
50 50 H 1.09004 * 109.47794 * 60.00060 * 27 26 25
51 51 H 1.09001 * 109.47273 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.4309 1.4600 -0.0006
5 6 3.8195 2.9160 -0.0012
6 7 4.0187 3.6625 1.0481
7 7 4.3363 4.8544 0.6870
8 6 4.3574 4.9328 -0.6226
9 7 4.6565 6.0569 -1.3759
10 6 5.7009 6.8612 -0.7290
11 6 6.1077 8.0107 -1.6539
12 6 4.8813 8.8774 -1.9524
13 6 5.2624 9.9764 -2.9106
14 1 4.7761 10.0471 -3.8723
15 6 6.2320 10.8916 -2.5595
16 7 6.5643 11.8510 -3.3955
17 14 7.0727 10.7699 -0.8958
18 1 8.2781 9.9103 -1.0121
19 1 7.4737 12.1262 -0.4433
20 1 6.1347 10.1762 0.0906
21 6 3.7907 8.0058 -2.5811
22 6 3.4511 6.8565 -1.6294
23 7 4.0238 3.6999 -1.1027
24 6 3.9104 3.2986 -2.5071
25 6 5.2731 2.8204 -3.0125
26 8 5.1627 2.4296 -4.3825
27 6 6.3865 1.9636 -4.9544
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5139 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 1.8932 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 3.8332 0.9766 -0.8908
34 1 3.8340 0.9762 0.8892
35 1 5.3191 7.2668 0.2079
36 1 6.5689 6.2339 -0.5261
37 1 6.8718 8.6166 -1.1670
38 1 6.5025 7.6057 -2.5857
39 1 4.5094 9.3140 -1.0254
40 1 7.2462 12.4951 -3.1483
41 1 4.1491 7.6008 -3.5276
42 1 2.8994 8.6082 -2.7568
43 1 2.6851 6.2258 -2.0803
44 1 3.0798 7.2620 -0.6882
45 1 3.1855 2.4895 -2.5965
46 1 3.5803 4.1496 -3.1027
47 1 5.9981 3.6295 -2.9232
48 1 5.6033 1.9693 -2.4169
49 1 7.1350 2.7545 -4.9050
50 1 6.7393 1.0943 -4.3994
51 1 6.2189 1.6862 -5.9951
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000802436752.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:51:16
Heat of formation + Delta-G solvation = 0.981195 kcal
Electronic energy + Delta-G solvation = -30730.501918 eV
Core-core repulsion = 26667.186437 eV
Total energy + Delta-G solvation = -4063.315481 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-43.08737 -38.76376 -38.39889 -38.28545 -35.36541 -34.26624 -32.36151 -31.65750
-30.46852 -30.22663 -29.82914 -26.93500 -26.55031 -25.73669 -23.83357 -23.20120
-22.79130 -22.50759 -20.99182 -20.75056 -18.89795 -17.75201 -17.22563 -16.89285
-16.72944 -16.55988 -16.35761 -16.14219 -15.70532 -15.45946 -15.08324 -14.58900
-14.27272 -13.96990 -13.74214 -13.67164 -13.20268 -13.07098 -12.96786 -12.78125
-12.66739 -12.38495 -12.08305 -11.94041 -11.87473 -11.82886 -11.73373 -11.63116
-11.51734 -10.98271 -10.69829 -10.59994 -10.32999 -10.21502 -10.11222 -10.05493
-9.99024 -9.71498 -9.35498 -9.19226 -8.98802 -8.53853 -8.37472 -6.07734
-4.06929 1.47622 1.96535 2.65781 3.26488 3.34849 3.39341 3.40382
3.44926 3.88976 4.20560 4.29603 4.40731 4.47606 4.57105 4.65166
4.76331 4.84383 4.87625 4.94998 4.99241 5.02935 5.08388 5.17269
5.21863 5.28871 5.34135 5.36071 5.38732 5.45456 5.51194 5.66901
5.72671 5.74381 5.82329 5.88502 5.93800 6.02777 6.24878 6.31741
6.40175 6.60154 6.67923 6.68438 6.71274 6.85522 7.02657 7.21608
7.34348 7.53940 7.75343 8.51234 8.68091 8.96228 9.54855 11.05465
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.013677 B = 0.003034 C = 0.002737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2046.796984 B = 9227.574963 C =10229.063295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.058 3.942
3 O -0.382 6.382
4 C 0.158 3.842
5 C 0.165 3.835
6 N -0.262 5.262
7 N -0.314 5.314
8 C 0.375 3.625
9 N -0.460 5.460
10 C 0.071 3.929
11 C -0.117 4.117
12 C 0.012 3.988
13 C -0.511 4.511
14 H 0.074 0.926
15 C 0.070 3.930
16 N -0.901 5.901
17 Si 0.882 3.118
18 H -0.278 1.278
19 H -0.297 1.297
20 H -0.264 1.264
21 C -0.094 4.094
22 C 0.064 3.936
23 N -0.460 5.460
24 C 0.115 3.885
25 C 0.051 3.949
26 O -0.386 6.386
27 C 0.034 3.966
28 H 0.072 0.928
29 H 0.065 0.935
30 H 0.063 0.937
31 H 0.051 0.949
32 H 0.053 0.947
33 H 0.068 0.932
34 H 0.088 0.912
35 H 0.052 0.948
36 H 0.066 0.934
37 H 0.057 0.943
38 H 0.071 0.929
39 H 0.027 0.973
40 H 0.263 0.737
41 H 0.067 0.933
42 H 0.067 0.933
43 H 0.064 0.936
44 H 0.046 0.954
45 H 0.102 0.898
46 H 0.112 0.888
47 H 0.067 0.933
48 H 0.051 0.949
49 H 0.047 0.953
50 H 0.041 0.959
51 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.813 -26.981 1.757 27.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.019 4.019
3 O -0.301 6.301
4 C 0.079 3.921
5 C -0.102 4.102
6 N -0.104 5.104
7 N -0.159 5.159
8 C 0.019 3.981
9 N -0.187 5.187
10 C -0.056 4.056
11 C -0.155 4.155
12 C -0.007 4.007
13 C -0.549 4.549
14 H 0.092 0.908
15 C -0.132 4.132
16 N -0.539 5.539
17 Si 0.713 3.287
18 H -0.205 1.205
19 H -0.224 1.224
20 H -0.189 1.189
21 C -0.132 4.132
22 C -0.062 4.062
23 N -0.156 5.156
24 C -0.008 4.008
25 C -0.027 4.027
26 O -0.304 6.304
27 C -0.063 4.063
28 H 0.091 0.909
29 H 0.084 0.916
30 H 0.082 0.918
31 H 0.069 0.931
32 H 0.071 0.929
33 H 0.086 0.914
34 H 0.106 0.894
35 H 0.070 0.930
36 H 0.085 0.915
37 H 0.075 0.925
38 H 0.089 0.911
39 H 0.045 0.955
40 H 0.073 0.927
41 H 0.085 0.915
42 H 0.086 0.914
43 H 0.083 0.917
44 H 0.064 0.936
45 H 0.120 0.880
46 H 0.131 0.869
47 H 0.085 0.915
48 H 0.069 0.931
49 H 0.066 0.934
50 H 0.059 0.941
51 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -5.724 -26.395 2.575 27.131
hybrid contribution 0.781 -0.359 0.248 0.895
sum -4.943 -26.754 2.823 27.353
Atomic orbital electron populations
1.21748 0.93373 1.02363 1.03446 1.22521 0.95930 0.83018 1.00391
1.87998 1.19436 1.27142 1.95499 1.20388 0.82730 0.86495 1.02472
1.24105 1.07132 0.96186 0.82773 1.73993 1.14634 0.97855 1.23939
1.74761 1.20973 1.12098 1.08027 1.22762 0.99577 0.86988 0.88758
1.58847 1.11500 1.05056 1.43249 1.22232 0.91792 0.94685 0.96866
1.22107 1.00391 0.94474 0.98516 1.19219 0.91073 0.93476 0.96967
1.20997 1.21289 1.09568 1.03000 0.90751 1.25016 0.96535 0.95007
0.96612 1.69893 1.31947 1.16195 1.35897 0.86920 0.80213 0.76215
0.85398 1.20517 1.22449 1.18877 1.21541 0.99986 0.93922 0.97754
1.22359 0.88616 0.95012 1.00218 1.46098 1.52489 1.09071 1.07895
1.21550 0.97874 1.03483 0.77907 1.22702 0.97140 0.99457 0.83371
1.87796 1.33160 1.84963 1.24442 1.22790 0.86405 0.98176 0.98915
0.90883 0.91632 0.91760 0.93106 0.92869 0.91432 0.89428 0.92981
0.91526 0.92536 0.91068 0.95488 0.92679 0.91453 0.91399 0.91725
0.93551 0.88016 0.86940 0.91464 0.93097 0.93427 0.94068 0.89128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16
2 C 0.06 0.39 6.66 37.16 0.25 0.64 16
3 O -0.38 -3.98 10.33 -35.23 -0.36 -4.34 16
4 C 0.16 1.49 6.12 36.00 0.22 1.71 16
5 C 0.17 2.25 7.70 -154.02 -1.19 1.07 16
6 N -0.26 -4.47 12.18 32.99 0.40 -4.07 16
7 N -0.31 -5.81 11.69 30.31 0.35 -5.45 16
8 C 0.37 6.20 6.71 -318.88 -2.14 4.06 16
9 N -0.46 -7.79 4.67 -174.55 -0.82 -8.61 16
10 C 0.07 1.30 5.09 -3.83 -0.02 1.29 16
11 C -0.12 -2.45 4.84 -26.65 -0.13 -2.58 16
12 C 0.01 0.26 1.75 -91.65 -0.16 0.10 16
13 C -0.51 -13.90 9.14 -34.44 -0.31 -14.21 16
14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16
15 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16
16 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16
17 Si 0.88 21.72 24.37 -169.99 -4.14 17.58 16
18 H -0.28 -6.64 6.89 56.52 0.39 -6.25 16
19 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16
20 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16
21 C -0.09 -1.78 5.32 -26.65 -0.14 -1.92 16
22 C 0.06 1.08 5.40 -3.83 -0.02 1.06 16
23 N -0.46 -6.23 2.81 -114.09 -0.32 -6.55 16
24 C 0.12 1.23 6.28 -4.04 -0.03 1.20 16
25 C 0.05 0.52 6.26 37.16 0.23 0.75 16
26 O -0.39 -3.98 10.70 -35.23 -0.38 -4.36 16
27 C 0.03 0.26 11.01 101.05 1.11 1.37 16
28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16
30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16
32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16
33 H 0.07 0.46 7.88 -51.93 -0.41 0.06 16
34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16
36 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16
37 H 0.06 1.26 3.38 -51.93 -0.18 1.08 16
38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16
39 H 0.03 0.64 7.19 -51.93 -0.37 0.27 16
40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16
42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
43 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16
44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
45 H 0.10 0.90 7.80 -51.93 -0.41 0.50 16
46 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16
47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
49 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
50 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16
51 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
LS Contribution 406.33 15.07 6.12 6.12
Total: -1.00 -33.15 406.33 -9.39 -42.55
By element:
Atomic # 1 Polarization: 6.77 SS G_CDS: -8.99 Total: -2.22 kcal
Atomic # 6 Polarization: -2.11 SS G_CDS: -2.04 Total: -4.16 kcal
Atomic # 7 Polarization: -51.56 SS G_CDS: 0.39 Total: -51.17 kcal
Atomic # 8 Polarization: -7.96 SS G_CDS: -0.74 Total: -8.70 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.58 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -33.15 -9.39 -42.55 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000802436752.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.528 kcal
(2) G-P(sol) polarization free energy of solvation -33.154 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.375 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds