Wall clock time and date at job start Tue Mar 31 2020 21:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46835 * 2 1 4 4 C 1.46902 * 110.99614 * 188.95217 * 3 2 1 5 5 C 1.52998 * 109.46964 * 171.04738 * 4 3 2 6 6 O 1.42897 * 109.47219 * 65.00206 * 5 4 3 7 7 N 1.36595 * 110.99891 * 65.00578 * 3 2 1 8 8 C 1.34784 * 119.99543 * 243.95133 * 7 3 2 9 9 O 1.21281 * 120.00093 * 359.97438 * 8 7 3 10 10 C 1.50696 * 119.99865 * 180.02562 * 8 7 3 11 11 C 1.53000 * 109.47110 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 8 13 13 C 1.39862 * 126.04094 * 269.68901 * 12 11 10 14 14 C 1.50702 * 125.90180 * 0.02562 * 13 12 11 15 15 N 1.30842 * 108.19992 * 179.81747 * 13 12 11 16 16 N 1.40084 * 108.20663 * 0.44091 * 15 13 12 17 17 C 1.46495 * 126.04013 * 179.73793 * 16 15 13 18 18 C 1.50699 * 109.47131 * 269.98016 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47367 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47238 * 119.99996 * 22 20 18 25 25 H 1.48507 * 109.47262 * 239.99788 * 22 20 18 26 26 C 1.34950 * 107.92381 * 359.71898 * 16 15 13 27 27 C 1.50694 * 126.12576 * 179.97438 * 26 16 15 28 28 H 1.08997 * 109.46878 * 59.99915 * 1 2 3 29 29 H 1.08997 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46771 * 299.99882 * 1 2 3 31 31 H 1.09006 * 109.47150 * 240.00442 * 2 1 3 32 32 H 1.08996 * 109.47341 * 119.99827 * 2 1 3 33 33 H 1.08993 * 109.47457 * 291.04610 * 4 3 2 34 34 H 1.09008 * 109.47153 * 51.05018 * 4 3 2 35 35 H 1.09001 * 109.47666 * 185.00376 * 5 4 3 36 36 H 1.09004 * 109.47010 * 305.00128 * 5 4 3 37 37 H 0.96703 * 114.00395 * 180.02562 * 6 5 4 38 38 H 0.96998 * 120.00878 * 63.94656 * 7 3 2 39 39 H 1.09000 * 109.47543 * 59.99570 * 10 8 7 40 40 H 1.09008 * 109.47338 * 300.00084 * 10 8 7 41 41 H 1.09000 * 109.46884 * 60.00335 * 11 10 8 42 42 H 1.09000 * 109.46955 * 299.99651 * 11 10 8 43 43 H 1.08998 * 109.47393 * 89.99256 * 14 13 12 44 44 H 1.09001 * 109.46747 * 209.99996 * 14 13 12 45 45 H 1.08998 * 109.46776 * 329.99757 * 14 13 12 46 46 H 1.09001 * 109.47188 * 29.97306 * 17 16 15 47 47 H 1.08997 * 109.47530 * 149.97532 * 17 16 15 48 48 H 0.96999 * 120.00262 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.47170 * 270.02464 * 27 26 16 50 50 H 1.09004 * 109.47112 * 30.02444 * 27 26 16 51 51 H 1.09003 * 109.46820 * 150.02019 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4724 1.4298 -0.2134 5 6 3.9116 2.8793 -0.4298 6 8 3.6817 3.6300 0.7642 7 7 1.6748 2.0261 1.1558 8 6 0.8411 3.0845 1.1164 9 8 0.3977 3.4679 0.0546 10 6 0.4611 3.7922 2.3914 11 6 -0.4872 4.9489 2.0695 12 6 -0.8678 5.6563 3.3446 13 6 -1.9649 5.3536 4.1576 14 6 -2.9732 4.2613 3.9105 15 7 -1.9620 6.1798 5.1722 16 7 -0.8670 7.0422 5.0312 17 6 -0.4982 8.1238 5.9478 18 6 -1.1786 9.3986 5.5202 19 1 -1.8212 9.4027 4.6521 20 6 -0.9808 10.5597 6.2370 21 7 -0.1988 10.5545 7.2943 22 14 -1.8236 12.1400 5.7065 23 1 -2.6432 11.8814 4.4953 24 1 -2.6994 12.6261 6.8028 25 1 -0.7979 13.1690 5.3991 26 6 -0.2117 6.7002 3.9021 27 6 1.0281 7.3627 3.3592 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 3.9808 1.0228 0.6606 34 1 3.7290 0.8374 -1.0918 35 1 4.9732 2.9045 -0.6760 36 1 3.3384 3.3143 -1.2486 37 1 3.9373 4.5604 0.6992 38 1 2.0297 1.7198 2.0049 39 1 1.3584 4.1815 2.8723 40 1 -0.0353 3.0908 3.0622 41 1 -1.3846 4.5599 1.5885 42 1 0.0096 5.6501 1.3990 43 1 -2.6368 3.3412 4.3884 44 1 -3.9368 4.5555 4.3264 45 1 -3.0754 4.0970 2.8378 46 1 -0.8124 7.8660 6.9592 47 1 0.5825 8.2643 5.9279 48 1 -0.0593 11.3713 7.7985 49 1 0.7429 8.1760 2.6919 50 1 1.6188 7.7602 4.1846 51 1 1.6195 6.6311 2.8086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823841264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:30 Heat of formation + Delta-G solvation = 3.387758 kcal Electronic energy + Delta-G solvation = -30179.737752 eV Core-core repulsion = 26116.526627 eV Total energy + Delta-G solvation = -4063.211125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.57371 -40.02618 -37.76489 -36.45073 -34.29999 -33.27473 -32.47366 -32.44925 -31.51434 -30.12985 -28.92534 -27.74574 -26.44941 -25.83437 -23.93029 -22.55214 -22.42446 -21.68810 -20.33104 -18.74293 -18.57553 -17.77661 -17.15753 -16.91850 -16.65975 -16.44765 -15.48663 -14.96994 -14.68184 -14.54299 -14.47575 -14.30705 -13.90008 -13.62055 -13.37484 -13.07391 -12.88495 -12.82889 -12.54159 -12.49358 -12.40778 -12.22882 -12.11013 -11.96772 -11.74113 -11.59086 -11.45394 -11.40861 -11.29329 -11.18163 -10.91499 -10.79791 -10.61566 -10.26233 -10.23812 -9.70324 -9.62210 -9.51748 -9.11872 -9.00682 -8.63705 -8.13084 -7.41410 -6.24963 -4.31942 2.63272 2.83700 2.96954 3.20964 3.28933 3.34991 3.43920 3.66314 3.97553 4.04472 4.31179 4.72201 4.78562 4.81947 4.97190 5.01627 5.09071 5.10104 5.17300 5.29459 5.32862 5.36566 5.45575 5.48106 5.49481 5.55623 5.71254 5.71894 5.85729 5.90304 5.99169 6.01565 6.07775 6.08255 6.12811 6.29874 6.41600 6.46925 6.54497 6.61298 6.91757 7.06503 7.16069 7.33970 7.41441 7.51825 7.57250 7.68587 7.90610 8.10313 8.68904 8.70816 8.79107 9.34469 10.82648 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002446 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.042792 B =11446.778916 C =12393.889289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.032 3.968 3 N -0.293 5.293 4 C 0.037 3.963 5 C 0.083 3.917 6 O -0.566 6.566 7 N -0.570 5.570 8 C 0.543 3.457 9 O -0.525 6.525 10 C -0.127 4.127 11 C -0.008 4.008 12 C -0.267 4.267 13 C 0.050 3.950 14 C -0.064 4.064 15 N -0.298 5.298 16 N -0.326 5.326 17 C 0.257 3.743 18 C -0.533 4.533 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.093 3.907 27 C -0.085 4.085 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.379 0.621 38 H 0.378 0.622 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.267 0.733 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.180 -20.570 -14.082 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 N -0.110 5.110 4 C -0.091 4.091 5 C 0.005 3.995 6 O -0.371 6.371 7 N -0.316 5.316 8 C 0.331 3.669 9 O -0.398 6.398 10 C -0.169 4.169 11 C -0.047 4.047 12 C -0.279 4.279 13 C -0.114 4.114 14 C -0.123 4.123 15 N -0.122 5.122 16 N -0.105 5.105 17 C 0.139 3.861 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.531 5.531 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.207 1.207 26 C -0.038 4.038 27 C -0.143 4.143 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.226 0.774 38 H 0.216 0.784 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.919 -20.011 -13.667 25.494 hybrid contribution 1.022 0.571 0.036 1.171 sum 8.940 -19.440 -13.631 25.370 Atomic orbital electron populations 1.21682 0.93930 1.01259 1.03284 1.22608 0.97492 0.88272 1.01146 1.62945 1.12307 1.14524 1.21216 1.22701 0.87918 0.96796 1.01723 1.22069 0.98015 0.91369 0.88043 1.86478 1.88474 1.25746 1.36414 1.45294 1.50242 1.32379 1.03685 1.20697 0.76645 0.78119 0.91476 1.90647 1.53156 1.63897 1.32089 1.21680 1.01838 0.98707 0.94641 1.19367 0.97937 0.94260 0.93123 1.19372 1.01489 1.04360 1.02680 1.21941 0.97228 0.98123 0.94139 1.20022 0.96237 0.94388 1.01639 1.77265 1.06885 1.05110 1.22971 1.49224 1.18168 1.24820 1.18326 1.19641 0.96637 0.81484 0.88335 1.21355 1.29571 0.92659 1.13597 0.91748 1.24930 0.95077 0.99259 0.94579 1.69927 1.36926 1.28739 1.17470 0.86309 0.79345 0.82265 0.78832 1.19544 1.20646 1.20665 1.20770 0.96788 0.96466 0.89782 1.20342 0.92867 1.00016 1.01119 0.91490 0.92317 0.92592 0.89807 0.94351 0.93474 0.88533 0.93547 0.92548 0.77429 0.78447 0.89011 0.89555 0.91408 0.91442 0.91662 0.91639 0.91206 0.93125 0.93129 0.92347 0.90551 0.91054 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.98 37.16 0.37 -0.84 16 2 C 0.03 0.24 5.90 -3.82 -0.02 0.22 16 3 N -0.29 -2.75 4.28 -113.77 -0.49 -3.24 16 4 C 0.04 0.27 5.71 -3.82 -0.02 0.24 16 5 C 0.08 0.65 7.35 37.16 0.27 0.93 16 6 O -0.57 -5.07 11.29 -35.23 -0.40 -5.47 16 7 N -0.57 -5.67 2.68 31.22 0.08 -5.58 16 8 C 0.54 6.81 6.81 -10.98 -0.07 6.74 16 9 O -0.52 -8.56 16.31 5.56 0.09 -8.47 16 10 C -0.13 -1.53 5.68 -27.89 -0.16 -1.69 16 11 C -0.01 -0.11 4.41 -27.88 -0.12 -0.24 16 12 C -0.27 -4.83 5.35 -105.05 -0.56 -5.39 16 13 C 0.05 0.96 7.22 -82.41 -0.59 0.37 16 14 C -0.06 -0.93 10.26 36.01 0.37 -0.57 16 15 N -0.30 -6.94 12.58 33.67 0.42 -6.52 16 16 N -0.33 -7.67 3.60 -58.32 -0.21 -7.88 16 17 C 0.26 6.63 6.00 -5.20 -0.03 6.60 16 18 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 19 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 22 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.09 1.86 6.93 -82.26 -0.57 1.29 16 27 C -0.09 -1.40 9.72 36.00 0.35 -1.05 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.54 7.56 -51.93 -0.39 0.15 16 31 H 0.08 0.49 7.97 -51.93 -0.41 0.08 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.51 7.97 -51.92 -0.41 0.09 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.38 2.35 9.12 45.56 0.42 2.76 16 38 H 0.38 3.17 8.83 -185.16 -1.63 1.53 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 41 H 0.07 1.02 7.20 -51.93 -0.37 0.64 16 42 H 0.07 1.03 7.73 -51.93 -0.40 0.63 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.89 7.25 -51.93 -0.38 0.52 16 46 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.05 1.29 7.05 -51.93 -0.37 0.92 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 51 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 LS Contribution 420.41 15.07 6.34 6.34 Total: -1.00 -34.39 420.41 -9.01 -43.40 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -9.35 Total: 2.51 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.22 Total: -6.87 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.55 Total: -47.74 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.31 Total: -13.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.39 -9.01 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823841264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.785 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds