Wall clock time and date at job start Tue Mar 31 2020 21:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46835 * 2 1 4 4 C 1.46902 * 110.99614 * 188.95217 * 3 2 1 5 5 C 1.52998 * 109.46964 * 171.04738 * 4 3 2 6 6 O 1.42897 * 109.47219 * 65.00206 * 5 4 3 7 7 N 1.36595 * 110.99891 * 65.00578 * 3 2 1 8 8 C 1.34784 * 119.99543 * 243.95133 * 7 3 2 9 9 O 1.21281 * 120.00093 * 359.97438 * 8 7 3 10 10 C 1.50696 * 119.99865 * 180.02562 * 8 7 3 11 11 C 1.53000 * 109.47110 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 8 13 13 C 1.39862 * 126.04094 * 269.68901 * 12 11 10 14 14 C 1.50702 * 125.90180 * 0.02562 * 13 12 11 15 15 N 1.30842 * 108.19992 * 179.81747 * 13 12 11 16 16 N 1.40084 * 108.20663 * 0.44091 * 15 13 12 17 17 C 1.46495 * 126.04013 * 179.73793 * 16 15 13 18 18 C 1.50699 * 109.47131 * 269.98016 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99755 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47367 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47238 * 119.99996 * 22 20 18 25 25 H 1.48507 * 109.47262 * 239.99788 * 22 20 18 26 26 C 1.34950 * 107.92381 * 359.71898 * 16 15 13 27 27 C 1.50694 * 126.12576 * 179.97438 * 26 16 15 28 28 H 1.08997 * 109.46878 * 59.99915 * 1 2 3 29 29 H 1.08997 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46771 * 299.99882 * 1 2 3 31 31 H 1.09006 * 109.47150 * 240.00442 * 2 1 3 32 32 H 1.08996 * 109.47341 * 119.99827 * 2 1 3 33 33 H 1.08993 * 109.47457 * 291.04610 * 4 3 2 34 34 H 1.09008 * 109.47153 * 51.05018 * 4 3 2 35 35 H 1.09001 * 109.47666 * 185.00376 * 5 4 3 36 36 H 1.09004 * 109.47010 * 305.00128 * 5 4 3 37 37 H 0.96703 * 114.00395 * 180.02562 * 6 5 4 38 38 H 0.96998 * 120.00878 * 63.94656 * 7 3 2 39 39 H 1.09000 * 109.47543 * 59.99570 * 10 8 7 40 40 H 1.09008 * 109.47338 * 300.00084 * 10 8 7 41 41 H 1.09000 * 109.46884 * 60.00335 * 11 10 8 42 42 H 1.09000 * 109.46955 * 299.99651 * 11 10 8 43 43 H 1.08998 * 109.47393 * 89.99256 * 14 13 12 44 44 H 1.09001 * 109.46747 * 209.99996 * 14 13 12 45 45 H 1.08998 * 109.46776 * 329.99757 * 14 13 12 46 46 H 1.09001 * 109.47188 * 29.97306 * 17 16 15 47 47 H 1.08997 * 109.47530 * 149.97532 * 17 16 15 48 48 H 0.96999 * 120.00262 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.47170 * 270.02464 * 27 26 16 50 50 H 1.09004 * 109.47112 * 30.02444 * 27 26 16 51 51 H 1.09003 * 109.46820 * 150.02019 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4724 1.4298 -0.2134 5 6 3.9116 2.8793 -0.4298 6 8 3.6817 3.6300 0.7642 7 7 1.6748 2.0261 1.1558 8 6 0.8411 3.0845 1.1164 9 8 0.3977 3.4679 0.0546 10 6 0.4611 3.7922 2.3914 11 6 -0.4872 4.9489 2.0695 12 6 -0.8678 5.6563 3.3446 13 6 -1.9649 5.3536 4.1576 14 6 -2.9732 4.2613 3.9105 15 7 -1.9620 6.1798 5.1722 16 7 -0.8670 7.0422 5.0312 17 6 -0.4982 8.1238 5.9478 18 6 -1.1786 9.3986 5.5202 19 1 -1.8212 9.4027 4.6521 20 6 -0.9808 10.5597 6.2370 21 7 -0.1988 10.5545 7.2943 22 14 -1.8236 12.1400 5.7065 23 1 -2.6432 11.8814 4.4953 24 1 -2.6994 12.6261 6.8028 25 1 -0.7979 13.1690 5.3991 26 6 -0.2117 6.7002 3.9021 27 6 1.0281 7.3627 3.3592 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 3.9808 1.0228 0.6606 34 1 3.7290 0.8374 -1.0918 35 1 4.9732 2.9045 -0.6760 36 1 3.3384 3.3143 -1.2486 37 1 3.9373 4.5604 0.6992 38 1 2.0297 1.7198 2.0049 39 1 1.3584 4.1815 2.8723 40 1 -0.0353 3.0908 3.0622 41 1 -1.3846 4.5599 1.5885 42 1 0.0096 5.6501 1.3990 43 1 -2.6368 3.3412 4.3884 44 1 -3.9368 4.5555 4.3264 45 1 -3.0754 4.0970 2.8378 46 1 -0.8124 7.8660 6.9592 47 1 0.5825 8.2643 5.9279 48 1 -0.0593 11.3713 7.7985 49 1 0.7429 8.1760 2.6919 50 1 1.6188 7.7602 4.1846 51 1 1.6195 6.6311 2.8086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823841264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:29 Heat of formation + Delta-G solvation = -20.779887 kcal Electronic energy + Delta-G solvation = -30180.785739 eV Core-core repulsion = 26116.526627 eV Total energy + Delta-G solvation = -4064.259113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12104 -40.88506 -38.60268 -37.11052 -36.05214 -34.75757 -34.16817 -33.29886 -32.17048 -31.53431 -30.46748 -28.62833 -27.66618 -27.56996 -25.32570 -23.98603 -23.11900 -22.57621 -21.25819 -20.27796 -20.09761 -18.81619 -18.40520 -17.97547 -17.75574 -17.20182 -17.16182 -16.27239 -15.98479 -15.92234 -15.31831 -15.13034 -15.02943 -14.64117 -14.62177 -14.41784 -14.21366 -14.03015 -13.80883 -13.59450 -13.41073 -13.31013 -13.20734 -13.16235 -13.08625 -12.82686 -12.74298 -12.68471 -12.59796 -12.56032 -12.22369 -12.06287 -12.00802 -11.79122 -11.68119 -11.11964 -10.88329 -10.74927 -10.61248 -9.91728 -9.81139 -9.66123 -8.99136 -8.34474 -6.52084 1.20182 1.34750 1.36889 1.49482 1.82002 1.97355 2.00765 2.09140 2.33588 2.94782 3.36344 3.50085 3.85396 3.95765 4.02616 4.20831 4.24504 4.28007 4.30059 4.34677 4.39994 4.41946 4.57010 4.61604 4.64179 4.68200 4.75194 4.78391 4.80917 4.87493 4.90011 4.90568 4.95643 4.97033 5.00692 5.07293 5.07533 5.16076 5.34685 5.37946 5.48940 5.51889 5.59189 5.81110 5.89775 6.08136 6.34218 6.53038 6.63882 6.69815 6.90975 7.14162 7.19359 7.83727 8.71656 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002446 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.042792 B =11446.778916 C =12393.889289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 N -0.317 5.317 4 C 0.036 3.964 5 C 0.082 3.918 6 O -0.582 6.582 7 N -0.557 5.557 8 C 0.549 3.451 9 O -0.567 6.567 10 C -0.118 4.118 11 C 0.001 3.999 12 C -0.256 4.256 13 C 0.053 3.947 14 C -0.062 4.062 15 N -0.351 5.351 16 N -0.356 5.356 17 C 0.275 3.725 18 C -0.551 4.551 19 H 0.046 0.954 20 C 0.022 3.978 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.265 1.265 26 C 0.079 3.921 27 C -0.081 4.081 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.388 0.612 38 H 0.387 0.613 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.018 0.982 47 H 0.047 0.953 48 H 0.274 0.726 49 H 0.075 0.925 50 H 0.062 0.938 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 -22.105 -15.471 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 N -0.135 5.135 4 C -0.091 4.091 5 C 0.003 3.997 6 O -0.389 6.389 7 N -0.302 5.302 8 C 0.337 3.663 9 O -0.444 6.444 10 C -0.159 4.159 11 C -0.038 4.038 12 C -0.268 4.268 13 C -0.112 4.112 14 C -0.121 4.121 15 N -0.175 5.175 16 N -0.136 5.136 17 C 0.156 3.844 18 C -0.589 4.589 19 H 0.064 0.936 20 C -0.179 4.179 21 N -0.557 5.557 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.190 1.190 26 C -0.051 4.051 27 C -0.139 4.139 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.237 0.763 38 H 0.227 0.773 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.037 0.963 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.081 0.919 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.839 -21.584 -15.047 27.756 hybrid contribution 0.759 0.918 0.415 1.262 sum 9.598 -20.666 -14.632 27.080 Atomic orbital electron populations 1.21661 0.94960 1.01899 1.01396 1.22656 0.96560 0.87436 1.02730 1.62946 1.13868 1.15695 1.20991 1.22807 0.86549 0.96743 1.03026 1.22144 0.98989 0.91496 0.87028 1.86434 1.88777 1.26719 1.37002 1.45050 1.49112 1.31483 1.04548 1.20616 0.76559 0.78388 0.90752 1.90637 1.55004 1.65352 1.33408 1.21533 1.01609 0.97982 0.94783 1.19305 0.98614 0.94834 0.91031 1.19726 1.00471 1.03475 1.03143 1.22780 0.97858 0.97726 0.92805 1.20202 0.94904 0.93669 1.03311 1.77201 1.08012 1.06759 1.25537 1.48993 1.19601 1.25431 1.19576 1.19121 0.96003 0.81850 0.87439 1.21457 1.29957 0.94117 1.13405 0.93556 1.25743 0.95466 1.02309 0.94407 1.70006 1.37600 1.29942 1.18138 0.85312 0.78540 0.78397 0.78254 1.19939 1.19931 1.19016 1.21465 0.97714 0.97014 0.88890 1.20433 0.91788 1.00779 1.00938 0.93692 0.90452 0.94058 0.87959 0.92901 0.92700 0.86343 0.91380 0.94680 0.76337 0.77333 0.88182 0.88113 0.91360 0.91858 0.89127 0.91708 0.89092 0.96346 0.93488 0.91735 0.90625 0.91919 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.98 71.98 0.72 -1.44 16 2 C 0.03 0.41 5.90 86.30 0.51 0.92 16 3 N -0.32 -5.31 4.28 -513.86 -2.20 -7.51 16 4 C 0.04 0.43 5.71 86.30 0.49 0.93 16 5 C 0.08 1.13 7.35 71.98 0.53 1.66 16 6 O -0.58 -9.42 11.29 -148.98 -1.68 -11.10 16 7 N -0.56 -9.95 2.68 -173.53 -0.47 -10.42 16 8 C 0.55 12.89 6.81 87.65 0.60 13.48 16 9 O -0.57 -18.03 16.31 -3.03 -0.05 -18.08 16 10 C -0.12 -2.58 5.68 29.85 0.17 -2.41 16 11 C 0.00 0.04 4.41 29.85 0.13 0.17 16 12 C -0.26 -9.08 5.35 -20.14 -0.11 -9.18 16 13 C 0.05 2.02 7.22 43.10 0.31 2.33 16 14 C -0.06 -1.70 10.26 71.24 0.73 -0.97 16 15 N -0.35 -16.77 12.58 -47.38 -0.60 -17.37 16 16 N -0.36 -17.33 3.60 -338.42 -1.22 -18.55 16 17 C 0.28 14.91 6.00 85.63 0.51 15.43 16 18 C -0.55 -31.73 9.39 25.60 0.24 -31.49 16 19 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 20 C 0.02 1.20 5.46 84.66 0.46 1.67 16 21 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 22 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.08 3.17 6.93 41.40 0.29 3.46 16 27 C -0.08 -2.64 9.72 71.23 0.69 -1.95 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.74 7.56 -2.39 -0.02 0.72 16 31 H 0.10 0.89 7.97 -2.38 -0.02 0.87 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.12 0.87 7.97 -2.38 -0.02 0.85 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.39 4.28 9.12 -74.06 -0.68 3.60 16 38 H 0.39 5.51 8.83 -215.50 -1.90 3.61 16 39 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.07 1.93 7.20 -2.39 -0.02 1.91 16 42 H 0.06 1.84 7.73 -2.39 -0.02 1.83 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.09 2.10 7.25 -2.39 -0.02 2.08 16 46 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 2.52 7.05 -2.39 -0.02 2.50 16 48 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 49 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 50 H 0.06 2.13 7.08 -2.39 -0.02 2.11 16 51 H 0.11 2.65 7.77 -2.39 -0.02 2.63 16 Total: -1.00 -76.87 420.41 0.73 -76.14 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -1.65 Total: 20.76 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 6.28 Total: -7.42 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -4.19 Total: -106.32 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -1.73 Total: -29.19 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -76.87 0.73 -76.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823841264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.361 kcal (2) G-P(sol) polarization free energy of solvation -76.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds