Wall clock time and date at job start Tue Mar 31 2020 21:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46776 * 2 1 4 4 C 1.42895 * 114.00237 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47595 * 179.97438 * 4 3 2 6 6 N 1.30298 * 126.35004 * 269.96051 * 5 4 3 7 7 N 1.28527 * 110.05504 * 180.02562 * 6 5 4 8 8 C 1.31221 * 109.85788 * 0.02562 * 7 6 5 9 9 N 1.38587 * 126.46888 * 180.02562 * 8 7 6 10 10 C 1.46846 * 111.00165 * 272.23795 * 9 8 7 11 11 C 1.53029 * 109.52322 * 185.84073 * 10 9 8 12 12 C 1.53122 * 109.27915 * 300.82288 * 11 10 9 13 13 C 1.53119 * 109.16081 * 57.65683 * 12 11 10 14 14 H 1.08997 * 109.50529 * 62.28424 * 13 12 11 15 15 C 1.50699 * 109.50003 * 182.40826 * 13 12 11 16 16 H 1.07993 * 120.00296 * 119.80450 * 15 13 12 17 17 C 1.37878 * 119.99746 * 299.79806 * 15 13 12 18 18 N 1.31520 * 120.00195 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99920 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47392 * 89.99732 * 19 17 15 21 21 H 1.48503 * 109.46976 * 210.00125 * 19 17 15 22 22 H 1.48502 * 109.47070 * 329.99497 * 19 17 15 23 23 C 1.46851 * 110.99918 * 36.45234 * 9 8 7 24 24 N 1.36452 * 107.05695 * 359.97438 * 8 7 6 25 25 C 1.46503 * 127.13629 * 180.26237 * 24 8 7 26 26 C 1.52995 * 109.47075 * 264.48214 * 25 24 8 27 27 O 1.42900 * 109.46995 * 185.05195 * 26 25 24 28 28 C 1.42906 * 114.00029 * 180.02562 * 27 26 25 29 29 H 1.09007 * 109.46800 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47222 * 300.00015 * 1 2 3 31 31 H 1.09004 * 109.47154 * 60.00398 * 1 2 3 32 32 H 1.09000 * 109.47295 * 240.00528 * 2 1 3 33 33 H 1.08997 * 109.47406 * 119.99389 * 2 1 3 34 34 H 1.09009 * 109.47125 * 59.99721 * 4 3 2 35 35 H 1.09003 * 109.47057 * 300.00176 * 4 3 2 36 36 H 1.08999 * 109.45837 * 305.85695 * 10 9 8 37 37 H 1.09003 * 109.45702 * 65.82549 * 10 9 8 38 38 H 1.09006 * 109.50547 * 180.88029 * 11 10 9 39 39 H 1.09003 * 109.53665 * 60.78130 * 11 10 9 40 40 H 1.08998 * 109.51937 * 297.74613 * 12 11 10 41 41 H 1.09002 * 109.52123 * 177.56000 * 12 11 10 42 42 H 0.96996 * 119.99770 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.45849 * 294.17496 * 23 9 8 44 44 H 1.08999 * 109.46057 * 54.15537 * 23 9 8 45 45 H 1.09001 * 109.46651 * 24.48153 * 25 24 8 46 46 H 1.09000 * 109.46761 * 144.48095 * 25 24 8 47 47 H 1.09007 * 109.47342 * 305.04668 * 26 25 24 48 48 H 1.09002 * 109.47711 * 65.04895 * 26 25 24 49 49 H 1.09005 * 109.46755 * 299.99660 * 28 27 26 50 50 H 1.09004 * 109.47354 * 59.99397 * 28 27 26 51 51 H 1.08997 * 109.46767 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4603 0.0006 5 6 3.8193 2.9163 -0.0001 6 7 4.0196 3.6617 -1.0499 7 7 4.3378 4.8538 -0.6898 8 6 4.3582 4.9333 0.6198 9 7 4.6576 6.0580 1.3722 10 6 6.1025 6.1603 1.6137 11 6 6.3807 7.3264 2.5647 12 6 5.8553 8.6229 1.9422 13 6 4.3586 8.4726 1.6561 14 1 3.8234 8.3132 2.5922 15 6 3.8459 9.7228 0.9889 16 1 3.4070 9.6680 0.0037 17 6 3.9371 10.9367 1.6365 18 7 4.4720 11.0036 2.8361 19 14 3.3010 12.4863 0.8098 20 1 1.8727 12.6857 1.1640 21 1 4.0933 13.6545 1.2713 22 1 3.4314 12.3507 -0.6633 23 6 4.1390 7.2732 0.7313 24 7 4.0279 3.6999 1.1009 25 6 3.9144 3.2998 2.5057 26 6 5.2284 2.6630 2.9623 27 8 5.0798 2.1670 4.2942 28 6 6.2568 1.5496 4.8193 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8340 0.9766 -0.8892 35 1 3.8332 0.9769 0.8908 36 1 6.4625 5.2335 2.0604 37 1 6.6174 6.3317 0.6684 38 1 7.4546 7.4118 2.7315 39 1 5.8778 7.1494 3.5155 40 1 6.3862 8.8210 1.0110 41 1 6.0125 9.4495 2.6351 42 1 4.5357 11.8575 3.2918 43 1 4.6632 7.4394 -0.2098 44 1 3.0730 7.1548 0.5374 45 1 3.7038 4.1771 3.1174 46 1 3.1043 2.5785 2.6136 47 1 5.4849 1.8403 2.2948 48 1 6.0217 3.4103 2.9394 49 1 6.5349 0.7040 4.1903 50 1 7.0710 2.2742 4.8349 51 1 6.0622 1.2003 5.8333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828923407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:25 Heat of formation + Delta-G solvation = -6.671228 kcal Electronic energy + Delta-G solvation = -30722.201587 eV Core-core repulsion = 26658.554272 eV Total energy + Delta-G solvation = -4063.647315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.90654 -38.52391 -38.38456 -38.13717 -35.23274 -33.94200 -32.36356 -31.68999 -30.13723 -30.03272 -29.58207 -26.71045 -26.33150 -25.04419 -23.97706 -23.59462 -23.10712 -21.68114 -21.08639 -20.51340 -18.64300 -17.69629 -17.14115 -16.85487 -16.49394 -16.35063 -16.18469 -15.80529 -15.55096 -15.31908 -14.93970 -14.51426 -14.12546 -13.91387 -13.63267 -13.53456 -13.02766 -12.90462 -12.71159 -12.61896 -12.55710 -12.48376 -11.91321 -11.89369 -11.80154 -11.69422 -11.55708 -11.35430 -10.95940 -10.81760 -10.71213 -10.45717 -10.26572 -10.15576 -10.08189 -9.95710 -9.92676 -9.57800 -9.25955 -9.19734 -8.74596 -8.35480 -8.09103 -6.00021 -4.05570 1.63928 2.12163 2.84296 3.32723 3.39054 3.40426 3.44300 3.55012 4.10415 4.33284 4.39568 4.47107 4.54446 4.59903 4.73910 4.85148 4.86594 4.94994 4.98549 5.01751 5.03401 5.10574 5.30013 5.32001 5.35046 5.37336 5.40481 5.51088 5.59560 5.63916 5.76570 5.83618 5.86567 5.97148 6.16393 6.35325 6.36757 6.51564 6.59316 6.66453 6.72461 6.80154 6.85321 7.02715 7.26517 7.36552 7.66137 7.73929 7.99310 8.10111 8.42119 8.86707 8.97742 9.59104 11.06383 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.003080 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.257201 B = 9089.202212 C =10560.192831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.381 6.381 4 C 0.160 3.840 5 C 0.159 3.841 6 N -0.262 5.262 7 N -0.313 5.313 8 C 0.380 3.620 9 N -0.465 5.465 10 C 0.072 3.928 11 C -0.116 4.116 12 C -0.114 4.114 13 C 0.057 3.943 14 H 0.036 0.964 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.082 3.918 24 N -0.461 5.461 25 C 0.113 3.887 26 C 0.050 3.950 27 O -0.384 6.384 28 C 0.033 3.967 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.260 0.740 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.118 0.882 46 H 0.102 0.898 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.041 0.959 50 H 0.045 0.955 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 -24.289 2.431 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.300 6.300 4 C 0.081 3.919 5 C -0.108 4.108 6 N -0.105 5.105 7 N -0.157 5.157 8 C 0.024 3.976 9 N -0.191 5.191 10 C -0.054 4.054 11 C -0.154 4.154 12 C -0.152 4.152 13 C 0.038 3.962 14 H 0.054 0.946 15 C -0.552 4.552 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.043 4.043 24 N -0.157 5.157 25 C -0.011 4.011 26 C -0.028 4.028 27 O -0.302 6.302 28 C -0.063 4.063 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.136 0.864 46 H 0.120 0.880 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.360 -23.625 1.714 23.726 hybrid contribution 0.351 0.287 0.212 0.501 sum 1.712 -23.337 1.926 23.479 Atomic orbital electron populations 1.21747 0.93405 1.02278 1.03510 1.22511 0.95933 0.83116 1.00279 1.88015 1.19477 1.26996 1.95463 1.20360 0.82713 0.86635 1.02227 1.24081 1.07700 0.96060 0.82942 1.73985 1.14726 0.97803 1.23959 1.74787 1.20979 1.11777 1.08186 1.22890 0.99975 0.85998 0.88738 1.58975 1.15710 1.00222 1.44240 1.22171 0.84366 0.99256 0.99644 1.21716 0.99564 0.95680 0.98425 1.21713 0.97891 0.95512 1.00050 1.18720 0.92989 0.89805 0.94728 0.94609 1.21088 1.39519 0.91742 1.02860 0.92510 1.24910 0.95103 0.98876 0.94829 1.69880 1.44615 1.25400 1.12920 0.86589 0.78834 0.82709 0.79866 1.20689 1.21274 1.19853 1.22441 0.98687 0.86044 0.97172 1.46100 1.52065 1.09851 1.07712 1.21565 0.97890 1.03238 0.78417 1.22780 0.97622 0.97963 0.84442 1.87825 1.36136 1.77487 1.28748 1.22792 0.87604 0.96521 0.99424 0.90954 0.91733 0.91604 0.92940 0.93188 0.89598 0.91616 0.92654 0.93837 0.92623 0.91750 0.94545 0.88620 0.93008 0.93590 0.91723 0.86400 0.87963 0.93007 0.92082 0.94011 0.93609 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.45 6.66 37.16 0.25 0.70 16 3 O -0.38 -4.48 10.33 -35.23 -0.36 -4.84 16 4 C 0.16 1.69 6.24 36.00 0.22 1.92 16 5 C 0.16 2.40 7.70 -154.01 -1.19 1.21 16 6 N -0.26 -4.89 12.18 32.99 0.40 -4.48 16 7 N -0.31 -6.37 11.70 30.32 0.35 -6.01 16 8 C 0.38 6.99 6.71 -318.86 -2.14 4.85 16 9 N -0.47 -8.83 4.64 -174.55 -0.81 -9.64 16 10 C 0.07 1.24 5.40 -3.84 -0.02 1.22 16 11 C -0.12 -2.10 6.09 -26.65 -0.16 -2.27 16 12 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16 13 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 14 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 18 N -0.89 -24.86 11.36 55.43 0.63 -24.23 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.08 1.81 4.32 -3.83 -0.02 1.79 16 24 N -0.46 -6.96 2.81 -114.08 -0.32 -7.28 16 25 C 0.11 1.34 6.22 -4.04 -0.03 1.31 16 26 C 0.05 0.51 6.26 37.16 0.23 0.74 16 27 O -0.38 -3.92 10.70 -35.23 -0.38 -4.30 16 28 C 0.03 0.24 11.01 101.05 1.11 1.35 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.07 0.52 7.73 -51.93 -0.40 0.12 16 36 H 0.06 0.82 6.86 -51.93 -0.36 0.46 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 2.42 6.16 -51.93 -0.32 2.10 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 44 H 0.06 1.49 8.10 -51.93 -0.42 1.07 16 45 H 0.12 1.54 8.10 -51.93 -0.42 1.12 16 46 H 0.10 1.07 8.07 -51.93 -0.42 0.65 16 47 H 0.05 0.46 7.89 -51.92 -0.41 0.05 16 48 H 0.06 0.66 6.90 -51.93 -0.36 0.30 16 49 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 410.54 15.07 6.19 6.19 Total: -1.00 -31.84 410.54 -10.38 -42.23 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.98 Total: -1.84 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.08 Total: -2.05 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.26 Total: -51.65 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.74 Total: -9.14 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.84 -10.38 -42.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828923407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.555 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds