Wall clock time and date at job start Tue Mar 31 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46776 * 2 1 4 4 C 1.42895 * 114.00237 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47595 * 179.97438 * 4 3 2 6 6 N 1.30298 * 126.35004 * 269.96051 * 5 4 3 7 7 N 1.28527 * 110.05504 * 180.02562 * 6 5 4 8 8 C 1.31221 * 109.85788 * 0.02562 * 7 6 5 9 9 N 1.38587 * 126.46888 * 180.02562 * 8 7 6 10 10 C 1.46846 * 111.00165 * 272.23795 * 9 8 7 11 11 C 1.53029 * 109.52322 * 185.84073 * 10 9 8 12 12 C 1.53122 * 109.27915 * 300.82288 * 11 10 9 13 13 C 1.53119 * 109.16081 * 57.65683 * 12 11 10 14 14 H 1.08997 * 109.50529 * 62.28424 * 13 12 11 15 15 C 1.50699 * 109.50003 * 182.40826 * 13 12 11 16 16 H 1.07993 * 120.00296 * 119.80450 * 15 13 12 17 17 C 1.37878 * 119.99746 * 299.79806 * 15 13 12 18 18 N 1.31520 * 120.00195 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99920 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47392 * 89.99732 * 19 17 15 21 21 H 1.48503 * 109.46976 * 210.00125 * 19 17 15 22 22 H 1.48502 * 109.47070 * 329.99497 * 19 17 15 23 23 C 1.46851 * 110.99918 * 36.45234 * 9 8 7 24 24 N 1.36452 * 107.05695 * 359.97438 * 8 7 6 25 25 C 1.46503 * 127.13629 * 180.26237 * 24 8 7 26 26 C 1.52995 * 109.47075 * 264.48214 * 25 24 8 27 27 O 1.42900 * 109.46995 * 185.05195 * 26 25 24 28 28 C 1.42906 * 114.00029 * 180.02562 * 27 26 25 29 29 H 1.09007 * 109.46800 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47222 * 300.00015 * 1 2 3 31 31 H 1.09004 * 109.47154 * 60.00398 * 1 2 3 32 32 H 1.09000 * 109.47295 * 240.00528 * 2 1 3 33 33 H 1.08997 * 109.47406 * 119.99389 * 2 1 3 34 34 H 1.09009 * 109.47125 * 59.99721 * 4 3 2 35 35 H 1.09003 * 109.47057 * 300.00176 * 4 3 2 36 36 H 1.08999 * 109.45837 * 305.85695 * 10 9 8 37 37 H 1.09003 * 109.45702 * 65.82549 * 10 9 8 38 38 H 1.09006 * 109.50547 * 180.88029 * 11 10 9 39 39 H 1.09003 * 109.53665 * 60.78130 * 11 10 9 40 40 H 1.08998 * 109.51937 * 297.74613 * 12 11 10 41 41 H 1.09002 * 109.52123 * 177.56000 * 12 11 10 42 42 H 0.96996 * 119.99770 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.45849 * 294.17496 * 23 9 8 44 44 H 1.08999 * 109.46057 * 54.15537 * 23 9 8 45 45 H 1.09001 * 109.46651 * 24.48153 * 25 24 8 46 46 H 1.09000 * 109.46761 * 144.48095 * 25 24 8 47 47 H 1.09007 * 109.47342 * 305.04668 * 26 25 24 48 48 H 1.09002 * 109.47711 * 65.04895 * 26 25 24 49 49 H 1.09005 * 109.46755 * 299.99660 * 28 27 26 50 50 H 1.09004 * 109.47354 * 59.99397 * 28 27 26 51 51 H 1.08997 * 109.46767 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4603 0.0006 5 6 3.8193 2.9163 -0.0001 6 7 4.0196 3.6617 -1.0499 7 7 4.3378 4.8538 -0.6898 8 6 4.3582 4.9333 0.6198 9 7 4.6576 6.0580 1.3722 10 6 6.1025 6.1603 1.6137 11 6 6.3807 7.3264 2.5647 12 6 5.8553 8.6229 1.9422 13 6 4.3586 8.4726 1.6561 14 1 3.8234 8.3132 2.5922 15 6 3.8459 9.7228 0.9889 16 1 3.4070 9.6680 0.0037 17 6 3.9371 10.9367 1.6365 18 7 4.4720 11.0036 2.8361 19 14 3.3010 12.4863 0.8098 20 1 1.8727 12.6857 1.1640 21 1 4.0933 13.6545 1.2713 22 1 3.4314 12.3507 -0.6633 23 6 4.1390 7.2732 0.7313 24 7 4.0279 3.6999 1.1009 25 6 3.9144 3.2998 2.5057 26 6 5.2284 2.6630 2.9623 27 8 5.0798 2.1670 4.2942 28 6 6.2568 1.5496 4.8193 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8340 0.9766 -0.8892 35 1 3.8332 0.9769 0.8908 36 1 6.4625 5.2335 2.0604 37 1 6.6174 6.3317 0.6684 38 1 7.4546 7.4118 2.7315 39 1 5.8778 7.1494 3.5155 40 1 6.3862 8.8210 1.0110 41 1 6.0125 9.4495 2.6351 42 1 4.5357 11.8575 3.2918 43 1 4.6632 7.4394 -0.2098 44 1 3.0730 7.1548 0.5374 45 1 3.7038 4.1771 3.1174 46 1 3.1043 2.5785 2.6136 47 1 5.4849 1.8403 2.2948 48 1 6.0217 3.4103 2.9394 49 1 6.5349 0.7040 4.1903 50 1 7.0710 2.2742 4.8349 51 1 6.0622 1.2003 5.8333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828923407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:24 Heat of formation + Delta-G solvation = -25.360187 kcal Electronic energy + Delta-G solvation = -30723.012001 eV Core-core repulsion = 26658.554272 eV Total energy + Delta-G solvation = -4064.457729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.20629 -40.01886 -39.16811 -38.98716 -36.37993 -35.73745 -33.86238 -32.68781 -31.85729 -31.07203 -30.72989 -27.55586 -27.21952 -27.02582 -25.48917 -24.59177 -23.68943 -23.37792 -22.45048 -21.74322 -20.38188 -18.97260 -18.35376 -17.95861 -17.55587 -17.26211 -17.11484 -16.89608 -16.73955 -16.49558 -16.24724 -15.92746 -15.50348 -15.32934 -14.65013 -14.57244 -14.46478 -14.32200 -14.21309 -13.72930 -13.53538 -13.46596 -13.23392 -12.88905 -12.80143 -12.75994 -12.65876 -12.57518 -12.40466 -12.31047 -12.17130 -11.96622 -11.84152 -11.75339 -11.42894 -11.31379 -11.10777 -10.85243 -10.77995 -10.65667 -10.48479 -10.40736 -9.63519 -8.10620 -6.23529 0.42385 0.96290 1.41383 1.42480 1.52552 1.53817 2.37188 2.49916 2.65033 2.98644 3.17219 3.38596 3.48025 3.72782 3.76773 3.80730 3.99174 4.08628 4.13688 4.17187 4.20827 4.33039 4.35124 4.36497 4.42452 4.49160 4.52787 4.53563 4.55023 4.61850 4.65081 4.76954 4.83737 4.85487 4.86890 4.91464 4.98143 5.04821 5.05172 5.25798 5.28446 5.37728 5.51259 5.62373 5.68701 5.97743 6.01708 6.10967 6.12097 6.19763 6.36823 6.84956 7.43900 7.53764 8.94375 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.003080 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.257201 B = 9089.202212 C =10560.192831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.412 6.412 4 C 0.159 3.841 5 C 0.180 3.820 6 N -0.302 5.302 7 N -0.350 5.350 8 C 0.364 3.636 9 N -0.462 5.462 10 C 0.076 3.924 11 C -0.104 4.104 12 C -0.107 4.107 13 C 0.059 3.941 14 H 0.007 0.993 15 C -0.539 4.539 16 H 0.046 0.954 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.952 3.048 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.273 1.273 23 C 0.103 3.897 24 N -0.453 5.453 25 C 0.110 3.890 26 C 0.059 3.941 27 O -0.401 6.401 28 C 0.026 3.974 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.026 0.974 41 H 0.069 0.931 42 H 0.263 0.737 43 H 0.030 0.970 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.121 0.879 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.047 0.953 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -27.045 3.219 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 O -0.332 6.332 4 C 0.081 3.919 5 C -0.088 4.088 6 N -0.144 5.144 7 N -0.195 5.195 8 C 0.006 3.994 9 N -0.187 5.187 10 C -0.050 4.050 11 C -0.142 4.142 12 C -0.145 4.145 13 C 0.040 3.960 14 H 0.026 0.974 15 C -0.578 4.578 16 H 0.064 0.936 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.777 3.223 20 H -0.202 1.202 21 H -0.204 1.204 22 H -0.198 1.198 23 C -0.024 4.024 24 N -0.148 5.148 25 C -0.013 4.013 26 C -0.019 4.019 27 O -0.319 6.319 28 C -0.070 4.070 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.121 0.879 46 H 0.139 0.861 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.002 -26.411 2.517 26.606 hybrid contribution 0.095 1.020 0.004 1.024 sum 2.097 -25.391 2.521 25.602 Atomic orbital electron populations 1.21796 0.93466 1.03518 1.02285 1.22762 0.95916 0.81556 1.02085 1.87966 1.19782 1.29586 1.95817 1.20656 0.82802 0.83610 1.04827 1.24988 1.04510 0.97398 0.81905 1.73906 1.17012 0.97770 1.25667 1.74668 1.22114 1.13203 1.09474 1.22711 1.01295 0.86810 0.88539 1.58884 1.16822 0.99343 1.43691 1.22210 0.83273 1.00363 0.99190 1.21596 1.01189 0.93398 0.98035 1.21509 0.96552 0.97269 0.99151 1.18591 0.93914 0.89975 0.93494 0.97444 1.21399 1.40173 0.93430 1.02780 0.93596 1.25602 0.95230 1.01529 0.95418 1.69990 1.44977 1.26125 1.13765 0.85658 0.78415 0.79353 0.78844 1.20209 1.20395 1.19782 1.21958 0.97474 0.86989 0.95963 1.46213 1.50994 1.08592 1.09029 1.21760 0.99941 1.03237 0.76337 1.22628 0.95840 0.98321 0.85107 1.87801 1.37705 1.77817 1.28583 1.23005 0.86678 0.96936 1.00365 0.88486 0.92701 0.93089 0.91472 0.90916 0.87829 0.88083 0.89236 0.94627 0.89590 0.91744 0.95547 0.91275 0.92814 0.95188 0.93615 0.87863 0.86106 0.91056 0.92816 0.92379 0.93475 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.66 6.66 71.98 0.48 1.14 16 3 O -0.41 -8.73 10.33 -148.98 -1.54 -10.27 16 4 C 0.16 2.90 6.24 71.23 0.44 3.34 16 5 C 0.18 5.16 7.70 137.64 1.06 6.22 16 6 N -0.30 -11.23 12.18 -49.54 -0.60 -11.84 16 7 N -0.35 -14.55 11.70 -58.00 -0.68 -15.22 16 8 C 0.36 13.44 6.71 260.11 1.74 15.18 16 9 N -0.46 -17.76 4.64 -706.15 -3.27 -21.04 16 10 C 0.08 2.55 5.40 86.32 0.47 3.01 16 11 C -0.10 -3.71 6.09 30.64 0.19 -3.53 16 12 C -0.11 -4.97 5.03 30.67 0.15 -4.81 16 13 C 0.06 3.04 2.26 -11.49 -0.03 3.01 16 14 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 15 C -0.54 -30.60 8.56 25.60 0.22 -30.38 16 16 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 17 C 0.02 1.21 5.31 84.65 0.45 1.66 16 18 N -0.91 -51.94 11.36 21.45 0.24 -51.70 16 19 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.10 4.77 4.32 86.32 0.37 5.14 16 24 N -0.45 -13.11 2.81 -514.85 -1.45 -14.56 16 25 C 0.11 2.39 6.22 86.38 0.54 2.93 16 26 C 0.06 1.02 6.26 71.98 0.45 1.47 16 27 O -0.40 -7.03 10.70 -148.98 -1.59 -8.62 16 28 C 0.03 0.29 11.01 113.37 1.25 1.54 16 29 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.10 1.13 7.73 -2.39 -0.02 1.11 16 36 H 0.09 2.43 6.86 -2.39 -0.02 2.41 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 3.60 6.16 -2.39 -0.01 3.58 16 42 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 43 H 0.03 1.46 8.06 -2.39 -0.02 1.44 16 44 H 0.05 2.24 8.10 -2.39 -0.02 2.22 16 45 H 0.10 2.60 8.10 -2.39 -0.02 2.58 16 46 H 0.12 2.20 8.07 -2.39 -0.02 2.18 16 47 H 0.07 0.97 7.89 -2.38 -0.02 0.95 16 48 H 0.05 1.01 6.90 -2.39 -0.02 1.00 16 49 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 50 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -72.35 410.54 2.55 -69.80 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.89 Total: 12.29 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 8.53 Total: 4.73 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -5.76 Total: -114.36 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -3.13 Total: -18.89 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.35 2.55 -69.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828923407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.440 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds