Wall clock time and date at job start Tue Mar 31 2020 22:06:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46893 * 1
3 3 C 1.46839 * 111.00406 * 2 1
4 4 C 1.53046 * 109.52764 * 185.83924 * 3 2 1
5 5 C 1.53119 * 109.27361 * 300.81859 * 4 3 2
6 6 N 1.46501 * 109.52257 * 177.55404 * 5 4 3
7 7 C 1.34776 * 120.00093 * 154.99500 * 6 5 4
8 8 O 1.21286 * 119.99874 * 0.02562 * 7 6 5
9 9 C 1.50699 * 119.99899 * 180.02562 * 7 6 5
10 10 N 1.46902 * 109.46972 * 180.02562 * 9 7 6
11 11 C 1.46900 * 110.99990 * 169.99650 * 10 9 7
12 12 C 1.53241 * 109.33977 * 187.25390 * 11 10 9
13 13 N 1.47074 * 108.51879 * 306.17136 * 12 11 10
14 14 C 1.34784 * 120.88239 * 231.18421 * 13 12 11
15 15 O 1.21691 * 119.99743 * 355.17259 * 14 13 12
16 16 C 1.46372 * 120.00278 * 175.17093 * 14 13 12
17 17 H 1.08007 * 119.99803 * 13.25059 * 16 14 13
18 18 C 1.40041 * 120.00304 * 193.24972 * 16 14 13
19 19 N 1.30671 * 120.00456 * 188.99135 * 18 16 14
20 20 Si 1.86805 * 119.99799 * 8.99083 * 18 16 14
21 21 H 1.48502 * 109.46874 * 274.69864 * 20 18 16
22 22 H 1.48498 * 109.47069 * 34.70172 * 20 18 16
23 23 H 1.48501 * 109.47075 * 154.70105 * 20 18 16
24 24 C 1.47074 * 118.24054 * 51.46051 * 13 12 11
25 25 C 1.46894 * 111.00097 * 294.30253 * 10 9 7
26 26 C 1.53122 * 109.15970 * 57.65459 * 5 4 3
27 27 C 1.46849 * 110.99923 * 124.20950 * 2 1 3
28 28 H 1.09001 * 109.47144 * 60.00073 * 1 2 3
29 29 H 1.09000 * 109.47670 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.46906 * 300.00136 * 1 2 3
31 31 H 1.09000 * 109.46545 * 65.82319 * 3 2 1
32 32 H 1.08999 * 109.45463 * 305.84876 * 3 2 1
33 33 H 1.09000 * 109.50165 * 180.87780 * 4 3 2
34 34 H 1.08995 * 109.50111 * 60.75647 * 4 3 2
35 35 H 1.08999 * 109.52638 * 297.68434 * 5 4 3
36 36 H 0.97001 * 119.99801 * 335.00993 * 6 5 4
37 37 H 1.08996 * 109.47474 * 60.00338 * 9 7 6
38 38 H 1.08999 * 109.46925 * 300.00010 * 9 7 6
39 39 H 1.08998 * 109.48928 * 67.29460 * 11 10 9
40 40 H 1.08999 * 109.49288 * 307.21659 * 11 10 9
41 41 H 1.09006 * 109.62663 * 186.46318 * 12 11 10
42 42 H 1.09003 * 109.62690 * 65.88283 * 12 11 10
43 43 H 0.96994 * 120.00332 * 180.02562 * 19 18 16
44 44 H 1.09005 * 109.62963 * 68.24497 * 24 13 12
45 45 H 1.08996 * 109.63328 * 188.82837 * 24 13 12
46 46 H 1.09004 * 109.49207 * 292.70423 * 25 10 9
47 47 H 1.08997 * 109.49271 * 52.78318 * 25 10 9
48 48 H 1.08998 * 109.50362 * 62.28228 * 26 5 4
49 49 H 1.09005 * 109.50152 * 182.40007 * 26 5 4
50 50 H 1.08998 * 109.46111 * 294.17668 * 27 2 1
51 51 H 1.09004 * 109.46148 * 54.14402 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9953 1.3708 0.0000
4 6 3.5182 1.3341 -0.1467
5 6 4.1188 0.5369 1.0144
6 7 5.5716 0.4486 0.8480
7 6 6.3631 0.2633 1.9231
8 8 5.8724 0.1691 3.0282
9 6 7.8576 0.1730 1.7519
10 7 8.4892 -0.0289 3.0627
11 6 9.9135 -0.3574 2.9157
12 6 10.4906 -0.7366 4.2837
13 7 10.1973 0.3490 5.2316
14 6 11.1737 0.8911 5.9863
15 8 12.2975 0.4255 5.9534
16 6 10.8823 2.0399 6.8452
17 1 9.8582 2.3207 7.0426
18 6 11.9313 2.7751 7.4112
19 7 11.6786 3.6861 8.3133
20 14 13.6921 2.4533 6.8766
21 1 14.2517 1.3280 7.6676
22 1 13.7152 2.1038 5.4335
23 1 14.5090 3.6725 7.1038
24 6 8.8092 0.8232 5.3388
25 6 8.2993 1.1450 3.9251
26 6 3.5180 -0.8716 1.0209
27 6 1.9952 -0.7708 1.1338
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.7325 1.8608 0.9376
32 1 1.5635 1.9255 -0.8331
33 1 3.9099 2.3511 -0.1310
34 1 3.7814 0.8566 -1.0905
35 1 3.8896 1.0360 1.9560
36 1 5.9640 0.5237 -0.0359
37 1 8.2289 1.0965 1.3077
38 1 8.0985 -0.6664 1.0996
39 1 10.4475 0.5078 2.5227
40 1 10.0243 -1.1965 2.2289
41 1 11.5694 -0.8697 4.2018
42 1 10.0301 -1.6612 4.6318
43 1 12.4051 4.1955 8.7050
44 1 8.1902 0.0456 5.7864
45 1 8.7757 1.7217 5.9549
46 1 8.8559 1.9892 3.5180
47 1 7.2394 1.3954 3.9703
48 1 3.7812 -1.3837 0.0954
49 1 3.9098 -1.4304 1.8709
50 1 1.7324 -0.2708 2.0660
51 1 1.5633 -1.7716 1.1242
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000878672813.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:06:07
Heat of formation + Delta-G solvation = -58.124152 kcal
Electronic energy + Delta-G solvation = -29973.143022 eV
Core-core repulsion = 25907.264540 eV
Total energy + Delta-G solvation = -4065.878481 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.39189 -39.23972 -38.45152 -36.74048 -35.27151 -33.59966 -32.80973 -32.06286
-31.30773 -30.70731 -28.78651 -26.93545 -26.31867 -24.51618 -23.64170 -23.13264
-22.78249 -20.88642 -20.61916 -20.13063 -18.82875 -17.21694 -16.89439 -16.65237
-16.04528 -15.77035 -15.56899 -15.48052 -15.00132 -14.94617 -14.62232 -14.43204
-14.37181 -14.10061 -13.84138 -13.66351 -13.51484 -13.10222 -12.87331 -12.81318
-12.37790 -12.31463 -12.11854 -11.97781 -11.80593 -11.70785 -11.60575 -11.50691
-11.19514 -11.00511 -10.91749 -10.80283 -10.67119 -10.62985 -10.33698 -9.71069
-9.39560 -9.22718 -8.99868 -8.79656 -8.23201 -7.85577 -7.43816 -6.59074
-4.79987 2.58628 2.85528 3.47022 3.47625 3.51092 3.74965 3.99919
4.21939 4.27377 4.35099 4.43683 4.60616 4.61482 4.66972 4.73783
4.87756 5.02342 5.05616 5.07715 5.10581 5.15832 5.22000 5.28762
5.33186 5.40143 5.43667 5.44242 5.52216 5.52663 5.61663 5.71683
5.72842 5.76132 5.88530 5.93054 6.07713 6.20472 6.30699 6.38746
6.48731 6.58074 6.61367 6.67561 6.98788 7.11890 7.24976 7.38286
7.67872 7.93043 8.17677 8.36250 8.76244 9.18658 10.07962 10.41792
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.026230 B = 0.002059 C = 0.001995
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1067.222972 B =13597.498088 C =14034.284829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.545 5.545
3 C 0.058 3.942
4 C -0.124 4.124
5 C 0.146 3.854
6 N -0.733 5.733
7 C 0.515 3.485
8 O -0.513 6.513
9 C 0.036 3.964
10 N -0.520 5.520
11 C 0.045 3.955
12 C 0.125 3.875
13 N -0.635 5.635
14 C 0.554 3.446
15 O -0.619 6.619
16 C -0.533 4.533
17 H 0.091 0.909
18 C 0.101 3.899
19 N -0.829 5.829
20 Si 0.968 3.032
21 H -0.278 1.278
22 H -0.266 1.266
23 H -0.323 1.323
24 C 0.129 3.871
25 C 0.039 3.961
26 C -0.126 4.126
27 C 0.057 3.943
28 H 0.068 0.932
29 H 0.069 0.931
30 H 0.026 0.974
31 H 0.037 0.963
32 H 0.079 0.921
33 H 0.074 0.926
34 H 0.077 0.923
35 H 0.085 0.915
36 H 0.398 0.602
37 H 0.060 0.940
38 H 0.101 0.899
39 H 0.037 0.963
40 H 0.076 0.924
41 H 0.088 0.912
42 H 0.055 0.945
43 H 0.281 0.719
44 H 0.056 0.944
45 H 0.100 0.900
46 H 0.032 0.968
47 H 0.093 0.907
48 H 0.072 0.928
49 H 0.075 0.925
50 H 0.037 0.963
51 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.315 -5.137 -21.329 29.901
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.270 5.270
3 C -0.070 4.070
4 C -0.162 4.162
5 C 0.041 3.959
6 N -0.386 5.386
7 C 0.301 3.699
8 O -0.387 6.387
9 C -0.096 4.096
10 N -0.245 5.245
11 C -0.083 4.083
12 C 0.001 3.999
13 N -0.369 5.369
14 C 0.364 3.636
15 O -0.511 6.511
16 C -0.569 4.569
17 H 0.109 0.891
18 C -0.117 4.117
19 N -0.458 5.458
20 Si 0.801 3.199
21 H -0.205 1.205
22 H -0.191 1.191
23 H -0.254 1.254
24 C 0.005 3.995
25 C -0.089 4.089
26 C -0.165 4.165
27 C -0.071 4.071
28 H 0.087 0.913
29 H 0.087 0.913
30 H 0.044 0.956
31 H 0.055 0.945
32 H 0.098 0.902
33 H 0.093 0.907
34 H 0.096 0.904
35 H 0.103 0.897
36 H 0.232 0.768
37 H 0.078 0.922
38 H 0.119 0.881
39 H 0.055 0.945
40 H 0.095 0.905
41 H 0.106 0.894
42 H 0.073 0.927
43 H 0.091 0.909
44 H 0.074 0.926
45 H 0.118 0.882
46 H 0.050 0.950
47 H 0.111 0.889
48 H 0.091 0.909
49 H 0.094 0.906
50 H 0.055 0.945
51 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -20.169 -5.919 -20.556 29.400
hybrid contribution 0.796 1.017 -0.352 1.339
sum -19.373 -4.902 -20.908 28.922
Atomic orbital electron populations
1.22351 0.87079 1.02228 1.00725 1.61965 1.07760 1.13640 1.43635
1.22031 0.94621 0.89372 1.01001 1.21865 0.94921 1.00592 0.98808
1.20948 0.79404 0.96048 0.99465 1.46068 1.06692 1.75729 1.10128
1.20664 0.89092 0.75766 0.84408 1.90703 1.75907 1.47397 1.24721
1.21949 0.91548 1.02362 0.93702 1.61680 1.13726 1.38866 1.10246
1.22551 0.86844 1.00026 0.98902 1.21280 1.00757 0.90619 0.87242
1.47767 1.08327 1.38270 1.42564 1.18326 0.82333 0.83738 0.79219
1.90186 1.22843 1.65558 1.72524 1.20787 0.96065 1.11759 1.28249
0.89149 1.25767 1.02632 0.92077 0.91190 1.69564 1.35710 1.19371
1.21200 0.85212 0.79220 0.74255 0.81232 1.20464 1.19114 1.25447
1.21645 0.82418 1.00716 0.94725 1.22787 1.01949 0.89823 0.94364
1.21978 0.94132 0.97264 1.03135 1.22074 0.95203 0.98446 0.91403
0.91295 0.91265 0.95560 0.94476 0.90239 0.90716 0.90445 0.89684
0.76793 0.92178 0.88099 0.94513 0.90516 0.89377 0.92704 0.90858
0.92556 0.88210 0.94953 0.88910 0.90921 0.90628 0.94493 0.90393
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.14 9.59 60.06 0.58 0.71 16
2 N -0.55 -3.83 4.91 -242.97 -1.19 -5.02 16
3 C 0.06 0.37 5.46 -3.83 -0.02 0.35 16
4 C -0.12 -0.75 5.57 -26.65 -0.15 -0.90 16
5 C 0.15 1.21 2.52 -67.81 -0.17 1.03 16
6 N -0.73 -5.98 5.08 -53.68 -0.27 -6.25 16
7 C 0.51 6.04 7.46 -10.99 -0.08 5.95 16
8 O -0.51 -8.17 13.99 5.55 0.08 -8.09 16
9 C 0.04 0.39 5.45 -4.98 -0.03 0.37 16
10 N -0.52 -7.84 4.37 -235.47 -1.03 -8.87 16
11 C 0.05 0.69 5.62 -3.70 -0.02 0.67 16
12 C 0.13 2.38 6.58 -3.60 -0.02 2.36 16
13 N -0.63 -14.42 3.00 -173.84 -0.52 -14.94 16
14 C 0.55 15.19 7.32 -12.99 -0.10 15.09 16
15 O -0.62 -18.28 11.82 5.20 0.06 -18.21 16
16 C -0.53 -15.32 9.35 -35.64 -0.33 -15.65 16
17 H 0.09 2.58 6.02 -52.48 -0.32 2.27 16
18 C 0.10 2.93 5.52 -17.37 -0.10 2.84 16
19 N -0.83 -23.87 13.92 55.55 0.77 -23.10 16
20 Si 0.97 25.93 25.88 -169.99 -4.40 21.53 16
21 H -0.28 -7.67 7.11 56.52 0.40 -7.27 16
22 H -0.27 -7.42 6.62 56.52 0.37 -7.05 16
23 H -0.32 -8.16 7.11 56.52 0.40 -7.76 16
24 C 0.13 2.58 6.54 -3.37 -0.02 2.56 16
25 C 0.04 0.66 5.27 -3.47 -0.02 0.65 16
26 C -0.13 -1.04 5.67 -26.65 -0.15 -1.20 16
27 C 0.06 0.43 5.46 -3.83 -0.02 0.41 16
28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16
30 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16
31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16
32 H 0.08 0.42 8.12 -51.93 -0.42 -0.01 16
33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16
36 H 0.40 2.12 8.61 -40.82 -0.35 1.77 16
37 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16
38 H 0.10 0.86 7.97 -51.93 -0.41 0.45 16
39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.08 0.93 7.99 -51.93 -0.41 0.51 16
41 H 0.09 1.78 7.09 -51.93 -0.37 1.41 16
42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16
43 H 0.28 7.46 8.29 -40.82 -0.34 7.12 16
44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
45 H 0.10 2.13 5.41 -51.93 -0.28 1.84 16
46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
47 H 0.09 1.57 5.76 -51.93 -0.30 1.27 16
48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
50 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16
51 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16
LS Contribution 392.05 15.07 5.91 5.91
Total: -1.00 -35.10 392.05 -10.01 -45.11
By element:
Atomic # 1 Polarization: 5.46 SS G_CDS: -8.76 Total: -3.30 kcal
Atomic # 6 Polarization: 15.89 SS G_CDS: -0.65 Total: 15.23 kcal
Atomic # 7 Polarization: -55.93 SS G_CDS: -2.24 Total: -58.18 kcal
Atomic # 8 Polarization: -26.44 SS G_CDS: 0.14 Total: -26.30 kcal
Atomic # 14 Polarization: 25.93 SS G_CDS: -4.40 Total: 21.53 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -35.10 -10.01 -45.11 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000878672813.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.014 kcal
(2) G-P(sol) polarization free energy of solvation -35.104 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds