Wall clock time and date at job start Tue Mar 31 2020 21:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46671 * 2 1 4 4 C 1.50706 * 109.46710 * 240.00648 * 2 1 3 5 5 O 1.21278 * 119.99465 * 253.92121 * 4 2 1 6 6 N 1.34770 * 120.00319 * 73.92494 * 4 2 1 7 7 C 1.46503 * 119.99947 * 3.69575 * 6 4 2 8 8 C 1.46499 * 120.00284 * 183.70148 * 6 4 2 9 9 C 1.50694 * 109.47252 * 89.99284 * 8 6 4 10 10 H 1.08002 * 120.00348 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99817 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99985 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99736 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47284 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46877 * 120.00575 * 13 11 9 16 16 H 1.48501 * 109.46749 * 240.00061 * 13 11 9 17 17 N 1.46499 * 109.47334 * 120.00317 * 2 1 3 18 18 C 1.35309 * 125.86664 * 34.71219 * 17 2 1 19 19 C 1.35352 * 106.17447 * 180.26508 * 18 17 2 20 20 C 1.50699 * 126.75053 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47459 * 124.94786 * 20 19 18 22 22 C 1.53001 * 109.47376 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47010 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47072 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47072 * 179.97438 * 24 23 22 26 26 O 1.42900 * 109.46853 * 179.97438 * 25 24 23 27 27 N 1.33769 * 106.49450 * 0.02562 * 19 18 17 28 28 N 1.28633 * 108.88759 * 359.97438 * 27 19 18 29 29 H 1.08998 * 109.46844 * 175.77982 * 1 2 3 30 30 H 1.09006 * 109.46767 * 295.77844 * 1 2 3 31 31 H 1.09001 * 109.46894 * 55.77438 * 1 2 3 32 32 H 1.08996 * 109.47188 * 84.69932 * 7 6 4 33 33 H 1.09002 * 109.47334 * 204.69695 * 7 6 4 34 34 H 1.08997 * 109.47095 * 324.69686 * 7 6 4 35 35 H 1.09004 * 109.47254 * 210.00106 * 8 6 4 36 36 H 1.09005 * 109.46507 * 329.99596 * 8 6 4 37 37 H 0.97002 * 119.99646 * 179.97438 * 12 11 9 38 38 H 1.07999 * 126.91163 * 0.23371 * 18 17 2 39 39 H 1.09000 * 109.46846 * 244.95183 * 20 19 18 40 40 H 1.09000 * 109.47347 * 4.94489 * 20 19 18 41 41 H 1.09000 * 109.47416 * 300.00049 * 21 20 19 42 42 H 1.09001 * 109.46632 * 59.99810 * 21 20 19 43 43 H 1.09000 * 109.47200 * 300.00563 * 22 21 20 44 44 H 1.08996 * 109.46636 * 60.00525 * 22 21 20 45 45 H 1.09004 * 109.46874 * 299.99931 * 23 22 21 46 46 H 1.09000 * 109.47556 * 59.99859 * 23 22 21 47 47 H 1.09004 * 109.46762 * 299.99445 * 24 23 22 48 48 H 1.09000 * 109.47498 * 59.99269 * 24 23 22 49 49 H 1.08993 * 109.46752 * 299.98950 * 25 24 23 50 50 H 1.08996 * 109.47282 * 60.00012 * 25 24 23 51 51 H 0.96703 * 114.00214 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5086 -1.8217 -1.1372 6 7 1.9522 -0.1105 -2.4348 7 6 1.4521 1.2627 -2.5374 8 6 2.3651 -0.8316 -3.6413 9 6 1.1838 -1.5725 -4.2128 10 1 0.2216 -1.5120 -3.7262 11 6 1.3313 -2.3269 -5.3575 12 7 2.5030 -2.4002 -5.9503 13 14 -0.1332 -3.2448 -6.0662 14 1 -1.3280 -3.0001 -5.2189 15 1 -0.3984 -2.7636 -7.4459 16 1 0.1625 -4.6997 -6.0976 17 7 2.0184 -0.6907 1.1961 18 6 1.4329 -1.7554 1.7914 19 6 2.2080 -2.0651 2.8569 20 6 1.9800 -3.1809 3.8438 21 6 3.2257 -4.0667 3.9089 22 6 2.9945 -5.1992 4.9114 23 6 4.2406 -6.0846 4.9768 24 6 4.0091 -7.2175 5.9788 25 6 5.2549 -8.1033 6.0438 26 8 5.0389 -9.1610 6.9801 27 7 3.2161 -1.1858 2.8616 28 7 3.0750 -0.3852 1.8647 29 1 -0.3633 -1.0249 -0.0756 30 1 -0.3633 0.4470 0.9255 31 1 -0.3633 0.5780 -0.8497 32 1 2.2686 1.9613 -2.3550 33 1 1.0482 1.4287 -3.5361 34 1 0.6673 1.4198 -1.7974 35 1 2.7401 -0.1217 -4.3786 36 1 3.1520 -1.5423 -3.3883 37 1 2.6067 -2.9313 -6.7554 38 1 0.5288 -2.2569 1.4793 39 1 1.7819 -2.7594 4.8293 40 1 1.1256 -3.7783 3.5258 41 1 3.4238 -4.4882 2.9234 42 1 4.0801 -3.4692 4.2269 43 1 2.7967 -4.7774 5.8968 44 1 2.1401 -5.7967 4.5936 45 1 4.4387 -6.5064 3.9914 46 1 5.0948 -5.4869 5.2947 47 1 3.8107 -6.7960 6.9643 48 1 3.1549 -7.8152 5.6607 49 1 5.4528 -8.5248 5.0584 50 1 6.1093 -7.5059 6.3619 51 1 5.7895 -9.7637 7.0728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881116657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:00 Heat of formation + Delta-G solvation = -9.693919 kcal Electronic energy + Delta-G solvation = -28873.195568 eV Core-core repulsion = 24809.417179 eV Total energy + Delta-G solvation = -4063.778389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.12780 -39.46270 -37.69505 -36.34092 -35.24212 -35.07086 -33.52715 -32.71928 -30.89949 -30.62609 -27.96537 -27.87461 -26.32473 -24.95579 -24.31132 -23.31072 -21.82563 -21.49785 -21.16939 -20.62031 -18.99197 -17.62355 -17.16069 -16.99443 -16.63880 -16.36504 -15.66127 -15.37132 -15.06444 -14.96614 -14.70078 -14.54355 -14.21834 -13.84506 -13.78838 -13.62584 -13.24934 -13.09458 -12.67572 -12.45755 -12.28990 -12.25360 -12.20572 -11.88514 -11.82577 -11.60209 -11.45142 -11.32471 -11.15801 -11.09373 -10.99599 -10.95959 -10.72077 -10.71082 -10.44074 -10.30796 -10.30140 -10.13595 -9.76933 -9.18952 -8.86226 -8.56175 -7.90129 -6.16847 -4.22954 1.75788 2.35421 2.70958 2.97312 3.20947 3.29068 3.31426 3.65525 3.82506 4.30439 4.35395 4.54611 4.61052 4.61868 4.66031 4.70048 4.79669 4.92279 5.00468 5.03600 5.13862 5.17355 5.17871 5.23516 5.31947 5.37761 5.44685 5.50484 5.51947 5.60266 5.69811 5.71417 5.73414 5.77326 5.80763 5.89152 6.00940 6.05497 6.08171 6.27486 6.29716 6.39256 6.65371 6.85819 7.25105 7.25516 7.31882 7.77690 8.06432 8.09534 8.62391 8.71179 8.82813 9.42517 10.91360 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.002157 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.252060 B =12979.563067 C =14892.352815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 H 0.129 0.871 4 C 0.499 3.501 5 O -0.522 6.522 6 N -0.591 5.591 7 C 0.069 3.931 8 C 0.245 3.755 9 C -0.531 4.531 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.900 3.100 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.282 1.282 17 N -0.268 5.268 18 C -0.024 4.024 19 C -0.029 4.029 20 C -0.026 4.026 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.120 4.120 25 C 0.073 3.927 26 O -0.578 6.578 27 N -0.267 5.267 28 N -0.086 5.086 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.184 0.816 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.046 0.954 50 H 0.045 0.955 51 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 -0.314 20.003 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 H 0.147 0.853 4 C 0.281 3.719 5 O -0.398 6.398 6 N -0.323 5.323 7 C -0.075 4.075 8 C 0.126 3.874 9 C -0.570 4.570 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.208 1.208 17 N -0.060 5.060 18 C -0.175 4.175 19 C -0.167 4.167 20 C -0.066 4.066 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.005 4.005 26 O -0.384 6.384 27 N -0.134 5.134 28 N -0.064 5.064 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.201 0.799 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.456 0.304 19.988 20.043 hybrid contribution -1.134 -1.344 -1.071 2.059 sum -2.590 -1.040 18.917 19.121 Atomic orbital electron populations 1.22213 0.89973 1.05155 1.04603 1.21676 0.97263 0.97828 0.81786 0.85284 1.19993 0.80843 0.86834 0.84189 1.90755 1.44629 1.19182 1.85256 1.48097 1.62457 1.14182 1.07546 1.21933 0.98481 0.83219 1.03835 1.19406 0.96558 0.92124 0.79286 1.21409 0.95872 1.29930 1.09788 0.92304 1.24957 0.96167 0.96291 0.96683 1.69941 1.22715 1.40502 1.19819 0.86422 0.82347 0.79750 0.78767 1.19785 1.20849 1.20791 1.46862 1.17376 1.21812 1.19970 1.23221 1.03538 0.94000 0.96777 1.21859 0.94658 1.00789 0.99387 1.19819 0.98761 0.91846 0.96139 1.21535 0.97929 0.96112 0.99717 1.21569 0.97667 0.96577 0.99601 1.21519 0.98790 0.96185 0.99149 1.21545 0.97479 0.96353 1.00407 1.22256 0.98003 0.88556 0.91675 1.86472 1.44747 1.42706 1.64429 1.74939 1.20981 1.03993 1.13503 1.78244 1.03808 1.21816 1.02567 0.90346 0.90391 0.88240 0.93103 0.89807 0.92105 0.94501 0.93658 0.92587 0.79897 0.90505 0.90391 0.91716 0.91099 0.91840 0.91825 0.91656 0.91689 0.91318 0.91270 0.93594 0.93667 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.47 37.16 0.31 -1.38 16 2 C 0.12 1.73 2.82 -69.08 -0.20 1.53 16 3 H 0.13 1.54 7.48 -51.93 -0.39 1.15 16 4 C 0.50 9.82 6.97 -10.99 -0.08 9.75 16 5 O -0.52 -12.94 15.89 5.56 0.09 -12.85 16 6 N -0.59 -11.60 2.86 -182.95 -0.52 -12.12 16 7 C 0.07 0.94 9.86 59.85 0.59 1.53 16 8 C 0.24 6.13 5.16 -5.20 -0.03 6.10 16 9 C -0.53 -14.30 9.39 -34.44 -0.32 -14.62 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 13 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 N -0.27 -4.31 2.84 -55.89 -0.16 -4.47 16 18 C -0.02 -0.35 10.42 -17.05 -0.18 -0.53 16 19 C -0.03 -0.42 6.50 -82.78 -0.54 -0.96 16 20 C -0.03 -0.28 5.79 -27.89 -0.16 -0.44 16 21 C -0.11 -1.23 5.19 -26.73 -0.14 -1.37 16 22 C -0.12 -0.98 5.21 -26.73 -0.14 -1.12 16 23 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 24 C -0.12 -0.98 5.58 -26.73 -0.15 -1.13 16 25 C 0.07 0.56 7.05 37.16 0.26 0.82 16 26 O -0.58 -4.88 13.66 -35.23 -0.48 -5.36 16 27 N -0.27 -4.65 12.40 33.29 0.41 -4.24 16 28 N -0.09 -1.55 13.16 60.35 0.79 -0.75 16 29 H 0.08 0.88 7.39 -51.93 -0.38 0.50 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.92 5.80 -51.93 -0.30 0.62 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 34 H 0.06 0.62 4.56 -51.93 -0.24 0.39 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.18 2.14 7.42 -52.49 -0.39 1.75 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 51 H 0.38 1.45 9.12 45.56 0.42 1.87 16 LS Contribution 419.40 15.07 6.32 6.32 Total: -1.00 -36.47 419.40 -6.79 -43.26 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.97 Total: 0.61 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.00 Total: -1.34 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 1.26 Total: -46.65 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.39 Total: -18.21 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.47 -6.79 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881116657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.568 kcal (2) G-P(sol) polarization free energy of solvation -36.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds