Wall clock time and date at job start Tue Mar 31 2020 21:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46671 * 2 1 4 4 C 1.50706 * 109.46710 * 240.00648 * 2 1 3 5 5 O 1.21278 * 119.99465 * 253.92121 * 4 2 1 6 6 N 1.34770 * 120.00319 * 73.92494 * 4 2 1 7 7 C 1.46503 * 119.99947 * 3.69575 * 6 4 2 8 8 C 1.46499 * 120.00284 * 183.70148 * 6 4 2 9 9 C 1.50694 * 109.47252 * 89.99284 * 8 6 4 10 10 H 1.08002 * 120.00348 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99817 * 179.97438 * 9 8 6 12 12 N 1.31517 * 119.99985 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99736 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47284 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46877 * 120.00575 * 13 11 9 16 16 H 1.48501 * 109.46749 * 240.00061 * 13 11 9 17 17 N 1.46499 * 109.47334 * 120.00317 * 2 1 3 18 18 C 1.35309 * 125.86664 * 34.71219 * 17 2 1 19 19 C 1.35352 * 106.17447 * 180.26508 * 18 17 2 20 20 C 1.50699 * 126.75053 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47459 * 124.94786 * 20 19 18 22 22 C 1.53001 * 109.47376 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47010 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47072 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47072 * 179.97438 * 24 23 22 26 26 O 1.42900 * 109.46853 * 179.97438 * 25 24 23 27 27 N 1.33769 * 106.49450 * 0.02562 * 19 18 17 28 28 N 1.28633 * 108.88759 * 359.97438 * 27 19 18 29 29 H 1.08998 * 109.46844 * 175.77982 * 1 2 3 30 30 H 1.09006 * 109.46767 * 295.77844 * 1 2 3 31 31 H 1.09001 * 109.46894 * 55.77438 * 1 2 3 32 32 H 1.08996 * 109.47188 * 84.69932 * 7 6 4 33 33 H 1.09002 * 109.47334 * 204.69695 * 7 6 4 34 34 H 1.08997 * 109.47095 * 324.69686 * 7 6 4 35 35 H 1.09004 * 109.47254 * 210.00106 * 8 6 4 36 36 H 1.09005 * 109.46507 * 329.99596 * 8 6 4 37 37 H 0.97002 * 119.99646 * 179.97438 * 12 11 9 38 38 H 1.07999 * 126.91163 * 0.23371 * 18 17 2 39 39 H 1.09000 * 109.46846 * 244.95183 * 20 19 18 40 40 H 1.09000 * 109.47347 * 4.94489 * 20 19 18 41 41 H 1.09000 * 109.47416 * 300.00049 * 21 20 19 42 42 H 1.09001 * 109.46632 * 59.99810 * 21 20 19 43 43 H 1.09000 * 109.47200 * 300.00563 * 22 21 20 44 44 H 1.08996 * 109.46636 * 60.00525 * 22 21 20 45 45 H 1.09004 * 109.46874 * 299.99931 * 23 22 21 46 46 H 1.09000 * 109.47556 * 59.99859 * 23 22 21 47 47 H 1.09004 * 109.46762 * 299.99445 * 24 23 22 48 48 H 1.09000 * 109.47498 * 59.99269 * 24 23 22 49 49 H 1.08993 * 109.46752 * 299.98950 * 25 24 23 50 50 H 1.08996 * 109.47282 * 60.00012 * 25 24 23 51 51 H 0.96703 * 114.00214 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5086 -1.8217 -1.1372 6 7 1.9522 -0.1105 -2.4348 7 6 1.4521 1.2627 -2.5374 8 6 2.3651 -0.8316 -3.6413 9 6 1.1838 -1.5725 -4.2128 10 1 0.2216 -1.5120 -3.7262 11 6 1.3313 -2.3269 -5.3575 12 7 2.5030 -2.4002 -5.9503 13 14 -0.1332 -3.2448 -6.0662 14 1 -1.3280 -3.0001 -5.2189 15 1 -0.3984 -2.7636 -7.4459 16 1 0.1625 -4.6997 -6.0976 17 7 2.0184 -0.6907 1.1961 18 6 1.4329 -1.7554 1.7914 19 6 2.2080 -2.0651 2.8569 20 6 1.9800 -3.1809 3.8438 21 6 3.2257 -4.0667 3.9089 22 6 2.9945 -5.1992 4.9114 23 6 4.2406 -6.0846 4.9768 24 6 4.0091 -7.2175 5.9788 25 6 5.2549 -8.1033 6.0438 26 8 5.0389 -9.1610 6.9801 27 7 3.2161 -1.1858 2.8616 28 7 3.0750 -0.3852 1.8647 29 1 -0.3633 -1.0249 -0.0756 30 1 -0.3633 0.4470 0.9255 31 1 -0.3633 0.5780 -0.8497 32 1 2.2686 1.9613 -2.3550 33 1 1.0482 1.4287 -3.5361 34 1 0.6673 1.4198 -1.7974 35 1 2.7401 -0.1217 -4.3786 36 1 3.1520 -1.5423 -3.3883 37 1 2.6067 -2.9313 -6.7554 38 1 0.5288 -2.2569 1.4793 39 1 1.7819 -2.7594 4.8293 40 1 1.1256 -3.7783 3.5258 41 1 3.4238 -4.4882 2.9234 42 1 4.0801 -3.4692 4.2269 43 1 2.7967 -4.7774 5.8968 44 1 2.1401 -5.7967 4.5936 45 1 4.4387 -6.5064 3.9914 46 1 5.0948 -5.4869 5.2947 47 1 3.8107 -6.7960 6.9643 48 1 3.1549 -7.8152 5.6607 49 1 5.4528 -8.5248 5.0584 50 1 6.1093 -7.5059 6.3619 51 1 5.7895 -9.7637 7.0728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881116657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:59 Heat of formation + Delta-G solvation = -36.229881 kcal Electronic energy + Delta-G solvation = -28874.346253 eV Core-core repulsion = 24809.417179 eV Total energy + Delta-G solvation = -4064.929075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.31363 -40.98484 -38.32990 -37.18333 -36.81082 -36.29809 -34.78391 -34.31684 -31.94176 -31.74323 -29.70242 -28.73723 -27.64640 -26.21561 -25.17760 -25.01854 -22.83184 -22.62967 -21.89726 -21.67530 -20.36877 -18.72801 -18.46145 -18.33459 -18.16975 -17.09971 -17.03350 -16.75729 -16.39019 -16.19160 -15.84166 -15.71444 -15.26892 -14.91833 -14.69043 -14.62790 -14.35992 -14.24591 -13.98773 -13.66139 -13.54680 -13.39506 -13.28415 -13.04717 -12.96499 -12.88421 -12.72747 -12.55315 -12.50468 -12.32037 -12.23114 -12.05484 -11.82900 -11.78178 -11.70624 -11.56011 -11.39404 -11.31570 -10.89203 -10.68624 -10.65506 -10.03836 -9.57155 -8.26054 -6.41181 0.54231 1.21801 1.36431 1.38546 1.48895 1.53507 1.54516 2.19526 2.38192 3.04805 3.24740 3.30570 3.34128 3.55858 3.62984 3.86533 3.97239 4.03870 4.12034 4.20577 4.22587 4.31855 4.39632 4.48942 4.52752 4.54588 4.55259 4.65810 4.66830 4.76472 4.81436 4.86215 4.89903 4.96860 4.98399 5.01880 5.10788 5.13330 5.16359 5.24098 5.30188 5.36756 5.46116 5.48998 5.54570 5.56632 5.74155 5.98827 6.51305 6.68670 6.86657 7.11326 7.31445 7.49600 8.81905 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.002157 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.252060 B =12979.563067 C =14892.352815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.130 3.870 3 H 0.157 0.843 4 C 0.491 3.509 5 O -0.587 6.587 6 N -0.595 5.595 7 C 0.060 3.940 8 C 0.258 3.742 9 C -0.539 4.539 10 H 0.064 0.936 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.970 3.030 14 H -0.259 1.259 15 H -0.272 1.272 16 H -0.286 1.286 17 N -0.272 5.272 18 C -0.028 4.028 19 C -0.033 4.033 20 C -0.025 4.025 21 C -0.110 4.110 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.117 4.117 25 C 0.070 3.930 26 O -0.598 6.598 27 N -0.293 5.293 28 N -0.121 5.121 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.028 0.972 36 H -0.007 1.007 37 H 0.267 0.733 38 H 0.211 0.789 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.340 0.309 21.240 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.174 0.826 4 C 0.276 3.724 5 O -0.467 6.467 6 N -0.326 5.326 7 C -0.081 4.081 8 C 0.137 3.863 9 C -0.578 4.578 10 H 0.082 0.918 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.794 3.206 14 H -0.183 1.183 15 H -0.197 1.197 16 H -0.212 1.212 17 N -0.065 5.065 18 C -0.180 4.180 19 C -0.171 4.171 20 C -0.064 4.064 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.008 4.008 26 O -0.407 6.407 27 N -0.160 5.160 28 N -0.099 5.099 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.046 0.954 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.228 0.772 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.351 0.991 21.242 21.706 hybrid contribution -0.158 -1.543 -1.444 2.119 sum -4.508 -0.551 19.798 20.312 Atomic orbital electron populations 1.22304 0.86478 1.05456 1.07089 1.21817 0.99611 0.97720 0.78377 0.82552 1.20952 0.79555 0.86303 0.85561 1.90719 1.47336 1.22218 1.86412 1.48059 1.62242 1.16094 1.06159 1.22308 1.00556 0.80039 1.05215 1.18848 0.94898 0.91346 0.81182 1.21714 0.96321 1.29964 1.09797 0.91781 1.25925 0.99057 0.97243 0.97242 1.70075 1.25022 1.41520 1.20411 0.85328 0.79027 0.77754 0.78474 1.18279 1.19679 1.21203 1.47062 1.17034 1.22304 1.20058 1.23794 1.04286 0.93500 0.96372 1.22525 0.93668 1.00874 1.00080 1.20000 0.99309 0.90902 0.96192 1.21459 0.97606 0.96645 0.99125 1.21512 0.97965 0.95761 0.99417 1.21482 0.98810 0.96253 0.98873 1.21500 0.97636 0.96233 1.00139 1.22289 0.98003 0.88606 0.91866 1.86417 1.46342 1.43314 1.64583 1.74890 1.22209 1.04903 1.13951 1.78180 1.05044 1.23076 1.03584 0.91105 0.87140 0.86449 0.90798 0.90169 0.87794 0.95395 0.98910 0.92452 0.77232 0.88727 0.88054 0.93965 0.92752 0.90594 0.90963 0.92353 0.91752 0.91367 0.91746 0.93217 0.92825 0.75386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.47 71.98 0.61 -2.06 16 2 C 0.13 3.45 2.82 44.25 0.12 3.58 16 3 H 0.16 3.25 7.48 -2.38 -0.02 3.23 16 4 C 0.49 19.32 6.97 87.66 0.61 19.93 16 5 O -0.59 -30.18 15.89 -3.02 -0.05 -30.23 16 6 N -0.59 -23.27 2.86 -851.14 -2.43 -25.70 16 7 C 0.06 1.50 9.86 127.77 1.26 2.76 16 8 C 0.26 13.43 5.16 85.63 0.44 13.87 16 9 C -0.54 -29.39 9.39 25.60 0.24 -29.15 16 10 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 11 C 0.00 0.24 5.46 84.66 0.46 0.70 16 12 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 13 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 16 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 17 N -0.27 -8.46 2.84 -330.72 -0.94 -9.40 16 18 C -0.03 -0.79 10.42 83.49 0.87 0.08 16 19 C -0.03 -0.93 6.50 41.60 0.27 -0.66 16 20 C -0.03 -0.50 5.79 29.85 0.17 -0.32 16 21 C -0.11 -2.33 5.19 30.59 0.16 -2.17 16 22 C -0.11 -1.70 5.21 30.59 0.16 -1.54 16 23 C -0.12 -1.85 5.21 30.59 0.16 -1.69 16 24 C -0.12 -1.82 5.58 30.59 0.17 -1.65 16 25 C 0.07 1.02 7.05 71.98 0.51 1.52 16 26 O -0.60 -9.53 13.66 -148.98 -2.03 -11.57 16 27 N -0.29 -10.25 12.40 -48.60 -0.60 -10.86 16 28 N -0.12 -4.36 13.16 37.02 0.49 -3.87 16 29 H 0.07 1.37 7.39 -2.39 -0.02 1.35 16 30 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.12 1.60 5.80 -2.39 -0.01 1.59 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.09 8.03 -2.39 -0.02 2.07 16 34 H 0.10 1.68 4.56 -2.39 -0.01 1.67 16 35 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 36 H -0.01 -0.45 7.37 -2.38 -0.02 -0.47 16 37 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.21 4.41 7.42 -2.91 -0.02 4.39 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.53 8.12 -2.39 -0.02 1.51 16 41 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.40 2.65 9.12 -74.06 -0.68 1.98 16 Total: -1.00 -84.40 419.40 3.20 -81.20 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.24 Total: 17.28 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.22 Total: 3.19 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -3.20 Total: -104.92 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -2.08 Total: -41.80 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -84.40 3.20 -81.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881116657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.969 kcal (2) G-P(sol) polarization free energy of solvation -84.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds