Wall clock time and date at job start Tue Mar 31 2020 21:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.21282 * 119.99544 * 119.99884 * 4 2 1 6 6 N 1.34774 * 120.00011 * 300.00244 * 4 2 1 7 7 C 1.46502 * 120.00006 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99881 * 179.97438 * 6 4 2 9 9 C 1.50700 * 109.47003 * 90.00049 * 8 6 4 10 10 H 1.08004 * 120.00201 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99836 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99875 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00256 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47291 * 90.00054 * 13 11 9 15 15 H 1.48500 * 109.47218 * 210.00259 * 13 11 9 16 16 H 1.48501 * 109.46782 * 330.00133 * 13 11 9 17 17 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 18 18 C 1.35313 * 125.86475 * 325.00453 * 17 2 1 19 19 C 1.35353 * 106.17098 * 179.97438 * 18 17 2 20 20 C 1.50704 * 126.75081 * 180.02562 * 19 18 17 21 21 C 1.52989 * 109.47112 * 125.00026 * 20 19 18 22 22 C 1.53000 * 109.47188 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.47400 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47400 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47281 * 179.97438 * 24 23 22 26 26 O 1.42894 * 109.47167 * 179.97438 * 25 24 23 27 27 N 1.33768 * 106.49861 * 0.02562 * 19 18 17 28 28 N 1.28633 * 108.88822 * 359.73221 * 27 19 18 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09005 * 109.46966 * 89.99945 * 7 6 4 33 33 H 1.09001 * 109.47307 * 210.00012 * 7 6 4 34 34 H 1.09000 * 109.47042 * 329.99997 * 7 6 4 35 35 H 1.08998 * 109.47195 * 209.99758 * 8 6 4 36 36 H 1.09004 * 109.46838 * 330.00163 * 8 6 4 37 37 H 0.97004 * 119.99890 * 180.02562 * 12 11 9 38 38 H 1.07995 * 126.91305 * 359.97438 * 18 17 2 39 39 H 1.09002 * 109.46788 * 245.00286 * 20 19 18 40 40 H 1.08999 * 109.46711 * 5.00191 * 20 19 18 41 41 H 1.09006 * 109.47631 * 300.00316 * 21 20 19 42 42 H 1.09007 * 109.47263 * 60.00076 * 21 20 19 43 43 H 1.08997 * 109.47078 * 300.00006 * 22 21 20 44 44 H 1.08999 * 109.46734 * 60.00105 * 22 21 20 45 45 H 1.09001 * 109.46982 * 300.00450 * 23 22 21 46 46 H 1.09007 * 109.47310 * 59.99843 * 23 22 21 47 47 H 1.08997 * 109.47078 * 299.99819 * 24 23 22 48 48 H 1.08999 * 109.46734 * 59.99918 * 24 23 22 49 49 H 1.09001 * 109.47329 * 300.00590 * 25 24 23 50 50 H 1.09008 * 109.46563 * 60.00052 * 25 24 23 51 51 H 0.96704 * 114.00110 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8649 0.9416 2.5890 8 6 2.1946 -0.9408 3.6508 9 6 3.5223 -0.3578 4.0612 10 1 3.9592 0.4467 3.4881 11 6 4.1797 -0.8520 5.1677 12 7 5.3382 -0.3429 5.5262 13 14 3.4245 -2.2438 6.1587 14 1 3.8836 -3.5461 5.6126 15 1 3.8453 -2.1261 7.5779 16 1 1.9440 -2.1655 6.0732 17 7 2.0184 -0.6906 -1.1961 18 6 1.4358 -1.7588 -1.7883 19 6 2.2126 -2.0703 -2.8520 20 6 1.9875 -3.1894 -3.8359 21 6 1.9573 -2.6214 -5.2561 22 6 1.7282 -3.7574 -6.2551 23 6 1.6986 -3.1894 -7.6755 24 6 1.4701 -4.3255 -8.6744 25 6 1.4399 -3.7575 -10.0947 26 8 1.2271 -4.8186 -11.0277 27 7 3.2194 -1.1896 -2.8581 28 7 3.0726 -0.3824 -1.8674 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.1833 0.6440 2.6221 33 1 1.1227 1.4668 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4766 -0.8152 4.4612 36 1 2.3154 -2.0021 3.4335 37 1 5.8009 -0.6908 6.3045 38 1 0.5327 -2.2615 -1.4751 39 1 2.7964 -3.9152 -3.7520 40 1 1.0373 -3.6777 -3.6196 41 1 1.1484 -1.8955 -5.3401 42 1 2.9076 -2.1330 -5.4725 43 1 2.5368 -4.4835 -6.1713 44 1 0.7778 -4.2453 -6.0386 45 1 0.8903 -2.4630 -7.7595 46 1 2.6492 -2.7017 -7.8917 47 1 2.2788 -5.0515 -8.5902 48 1 0.5197 -4.8136 -8.4584 49 1 0.6311 -3.0316 -10.1786 50 1 2.3902 -3.2691 -10.3109 51 1 1.1969 -4.5309 -11.9505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881116658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:05 Heat of formation + Delta-G solvation = -1.082963 kcal Electronic energy + Delta-G solvation = -28684.063503 eV Core-core repulsion = 24620.658514 eV Total energy + Delta-G solvation = -4063.404990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.14826 -39.61462 -37.78788 -36.42599 -35.33154 -35.24059 -33.60277 -32.63943 -30.97410 -30.72628 -28.40938 -27.98859 -26.59385 -24.98791 -24.35858 -23.08502 -21.88805 -21.47188 -21.23540 -20.63590 -19.09423 -17.71594 -17.20583 -17.09614 -17.03624 -16.46009 -15.67100 -15.44508 -15.26382 -15.08445 -14.80733 -14.54608 -14.02808 -13.97201 -13.78811 -13.67979 -13.40415 -13.32682 -12.67178 -12.57793 -12.53202 -12.40321 -12.23813 -11.97241 -11.93686 -11.69583 -11.52583 -11.49157 -11.22575 -11.18205 -11.08282 -11.03535 -10.78306 -10.63550 -10.49479 -10.39882 -10.27330 -10.16707 -9.64963 -9.26184 -8.91908 -8.67735 -7.98636 -6.16873 -4.17498 1.72742 2.32291 2.70580 2.88804 3.21761 3.27250 3.29856 3.51733 3.73403 4.27920 4.31050 4.43971 4.51636 4.53579 4.57916 4.62783 4.71233 4.82693 4.90016 4.95477 5.06959 5.12808 5.14263 5.15078 5.23425 5.28716 5.33003 5.40999 5.47358 5.51193 5.54263 5.58764 5.62232 5.68652 5.72497 5.81692 5.93444 5.96385 6.00759 6.16807 6.22983 6.34663 6.45705 6.66983 6.76241 7.05079 7.17077 7.48144 7.88713 8.33206 8.57790 8.70977 8.85803 9.41512 10.96298 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.001710 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.480068 B =16374.749055 C =16857.411874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 H 0.135 0.865 4 C 0.499 3.501 5 O -0.518 6.518 6 N -0.587 5.587 7 C 0.073 3.927 8 C 0.218 3.782 9 C -0.536 4.536 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.266 1.266 17 N -0.267 5.267 18 C -0.035 4.035 19 C -0.026 4.026 20 C -0.028 4.028 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.121 4.121 25 C 0.073 3.927 26 O -0.578 6.578 27 N -0.267 5.267 28 N -0.075 5.075 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.183 0.817 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.044 0.956 50 H 0.045 0.955 51 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.521 -1.734 -23.560 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 H 0.153 0.847 4 C 0.282 3.718 5 O -0.394 6.394 6 N -0.319 5.319 7 C -0.070 4.070 8 C 0.097 3.903 9 C -0.574 4.574 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.531 5.531 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.191 1.191 17 N -0.059 5.059 18 C -0.186 4.186 19 C -0.164 4.164 20 C -0.068 4.068 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.159 4.159 25 C -0.004 4.004 26 O -0.383 6.383 27 N -0.134 5.134 28 N -0.054 5.054 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.200 0.800 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.789 -1.647 -22.972 27.370 hybrid contribution -1.073 -0.820 0.536 1.453 sum -15.862 -2.467 -22.435 27.587 Atomic orbital electron populations 1.22415 0.90196 1.04793 1.05483 1.21606 0.96934 0.98224 0.81668 0.84722 1.20047 0.81849 0.85640 0.84235 1.90774 1.36631 1.26283 1.85669 1.47759 1.49696 1.28322 1.06141 1.21957 0.93699 0.87742 1.03644 1.19745 0.95643 0.93636 0.81226 1.21288 1.03113 1.20706 1.12329 0.90659 1.24855 0.94599 0.96412 0.96997 1.69895 1.14644 1.42074 1.26465 0.86851 0.79918 0.83245 0.79654 1.19883 1.20880 1.19070 1.46844 1.17583 1.21568 1.19934 1.23166 1.03630 0.94382 0.97380 1.21858 0.94444 1.00998 0.99080 1.19837 1.02481 0.93089 0.91367 1.21522 1.02819 0.97739 0.92938 1.21586 1.02163 0.98239 0.93624 1.21509 1.02236 0.97455 0.94294 1.21552 1.03129 0.98904 0.92319 1.22248 0.99284 0.89149 0.89750 1.86480 1.96038 1.36159 1.19625 1.74975 1.20739 1.03912 1.13758 1.78316 1.03387 1.21439 1.02255 0.90725 0.90333 0.87760 0.92696 0.89786 0.91905 0.94709 0.94469 0.92400 0.80008 0.90222 0.90442 0.92112 0.90994 0.91652 0.91857 0.91856 0.91652 0.91191 0.91292 0.93724 0.93646 0.77465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 8.47 37.16 0.31 -1.17 16 2 C 0.12 1.69 2.85 -69.08 -0.20 1.50 16 3 H 0.14 1.68 7.40 -51.93 -0.38 1.30 16 4 C 0.50 9.58 7.14 -10.98 -0.08 9.51 16 5 O -0.52 -12.71 16.00 5.56 0.09 -12.63 16 6 N -0.59 -10.99 2.86 -182.95 -0.52 -11.52 16 7 C 0.07 0.92 8.80 59.85 0.53 1.45 16 8 C 0.22 5.06 4.23 -5.19 -0.02 5.03 16 9 C -0.54 -15.10 9.94 -34.44 -0.34 -15.44 16 10 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 12 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 13 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 17 N -0.27 -4.25 2.75 -55.89 -0.15 -4.41 16 18 C -0.03 -0.48 10.59 -17.05 -0.18 -0.66 16 19 C -0.03 -0.37 6.50 -82.78 -0.54 -0.91 16 20 C -0.03 -0.29 5.79 -27.89 -0.16 -0.45 16 21 C -0.11 -1.01 5.19 -26.74 -0.14 -1.14 16 22 C -0.12 -0.84 5.21 -26.73 -0.14 -0.98 16 23 C -0.12 -0.77 5.21 -26.73 -0.14 -0.91 16 24 C -0.12 -0.84 5.58 -26.73 -0.15 -0.99 16 25 C 0.07 0.46 7.05 37.16 0.26 0.73 16 26 O -0.58 -4.25 13.66 -35.23 -0.48 -4.73 16 27 N -0.27 -4.74 12.40 33.29 0.41 -4.33 16 28 N -0.08 -1.41 13.17 60.35 0.79 -0.61 16 29 H 0.07 0.63 7.17 -51.93 -0.37 0.26 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.74 4.53 -51.93 -0.24 0.51 16 32 H 0.05 0.51 6.95 -51.93 -0.36 0.15 16 33 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.06 0.62 6.01 -51.93 -0.31 0.31 16 35 H 0.04 0.75 7.13 -51.93 -0.37 0.38 16 36 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.18 1.84 7.30 -52.49 -0.38 1.45 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.62 8.12 -51.93 -0.42 0.19 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 50 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 51 H 0.38 1.04 9.12 45.56 0.42 1.46 16 LS Contribution 413.78 15.07 6.24 6.24 Total: -1.00 -38.88 413.78 -6.46 -45.35 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.86 Total: -0.83 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.08 Total: -2.41 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 1.30 Total: -47.44 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.39 Total: -17.36 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -38.88 -6.46 -45.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881116658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.263 kcal (2) G-P(sol) polarization free energy of solvation -38.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds