Wall clock time and date at job start Tue Mar 31 2020 21:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.21282 * 119.99544 * 119.99884 * 4 2 1 6 6 N 1.34774 * 120.00011 * 300.00244 * 4 2 1 7 7 C 1.46502 * 120.00006 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99881 * 179.97438 * 6 4 2 9 9 C 1.50700 * 109.47003 * 90.00049 * 8 6 4 10 10 H 1.08004 * 120.00201 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99836 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99875 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00256 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47291 * 90.00054 * 13 11 9 15 15 H 1.48500 * 109.47218 * 210.00259 * 13 11 9 16 16 H 1.48501 * 109.46782 * 330.00133 * 13 11 9 17 17 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 18 18 C 1.35313 * 125.86475 * 325.00453 * 17 2 1 19 19 C 1.35353 * 106.17098 * 179.97438 * 18 17 2 20 20 C 1.50704 * 126.75081 * 180.02562 * 19 18 17 21 21 C 1.52989 * 109.47112 * 125.00026 * 20 19 18 22 22 C 1.53000 * 109.47188 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.47400 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47400 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47281 * 179.97438 * 24 23 22 26 26 O 1.42894 * 109.47167 * 179.97438 * 25 24 23 27 27 N 1.33768 * 106.49861 * 0.02562 * 19 18 17 28 28 N 1.28633 * 108.88822 * 359.73221 * 27 19 18 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09005 * 109.46966 * 89.99945 * 7 6 4 33 33 H 1.09001 * 109.47307 * 210.00012 * 7 6 4 34 34 H 1.09000 * 109.47042 * 329.99997 * 7 6 4 35 35 H 1.08998 * 109.47195 * 209.99758 * 8 6 4 36 36 H 1.09004 * 109.46838 * 330.00163 * 8 6 4 37 37 H 0.97004 * 119.99890 * 180.02562 * 12 11 9 38 38 H 1.07995 * 126.91305 * 359.97438 * 18 17 2 39 39 H 1.09002 * 109.46788 * 245.00286 * 20 19 18 40 40 H 1.08999 * 109.46711 * 5.00191 * 20 19 18 41 41 H 1.09006 * 109.47631 * 300.00316 * 21 20 19 42 42 H 1.09007 * 109.47263 * 60.00076 * 21 20 19 43 43 H 1.08997 * 109.47078 * 300.00006 * 22 21 20 44 44 H 1.08999 * 109.46734 * 60.00105 * 22 21 20 45 45 H 1.09001 * 109.46982 * 300.00450 * 23 22 21 46 46 H 1.09007 * 109.47310 * 59.99843 * 23 22 21 47 47 H 1.08997 * 109.47078 * 299.99819 * 24 23 22 48 48 H 1.08999 * 109.46734 * 59.99918 * 24 23 22 49 49 H 1.09001 * 109.47329 * 300.00590 * 25 24 23 50 50 H 1.09008 * 109.46563 * 60.00052 * 25 24 23 51 51 H 0.96704 * 114.00110 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8649 0.9416 2.5890 8 6 2.1946 -0.9408 3.6508 9 6 3.5223 -0.3578 4.0612 10 1 3.9592 0.4467 3.4881 11 6 4.1797 -0.8520 5.1677 12 7 5.3382 -0.3429 5.5262 13 14 3.4245 -2.2438 6.1587 14 1 3.8836 -3.5461 5.6126 15 1 3.8453 -2.1261 7.5779 16 1 1.9440 -2.1655 6.0732 17 7 2.0184 -0.6906 -1.1961 18 6 1.4358 -1.7588 -1.7883 19 6 2.2126 -2.0703 -2.8520 20 6 1.9875 -3.1894 -3.8359 21 6 1.9573 -2.6214 -5.2561 22 6 1.7282 -3.7574 -6.2551 23 6 1.6986 -3.1894 -7.6755 24 6 1.4701 -4.3255 -8.6744 25 6 1.4399 -3.7575 -10.0947 26 8 1.2271 -4.8186 -11.0277 27 7 3.2194 -1.1896 -2.8581 28 7 3.0726 -0.3824 -1.8674 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 -0.1833 0.6440 2.6221 33 1 1.1227 1.4668 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4766 -0.8152 4.4612 36 1 2.3154 -2.0021 3.4335 37 1 5.8009 -0.6908 6.3045 38 1 0.5327 -2.2615 -1.4751 39 1 2.7964 -3.9152 -3.7520 40 1 1.0373 -3.6777 -3.6196 41 1 1.1484 -1.8955 -5.3401 42 1 2.9076 -2.1330 -5.4725 43 1 2.5368 -4.4835 -6.1713 44 1 0.7778 -4.2453 -6.0386 45 1 0.8903 -2.4630 -7.7595 46 1 2.6492 -2.7017 -7.8917 47 1 2.2788 -5.0515 -8.5902 48 1 0.5197 -4.8136 -8.4584 49 1 0.6311 -3.0316 -10.1786 50 1 2.3902 -3.2691 -10.3109 51 1 1.1969 -4.5309 -11.9505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881116658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:04 Heat of formation + Delta-G solvation = -31.282476 kcal Electronic energy + Delta-G solvation = -28685.373053 eV Core-core repulsion = 24620.658514 eV Total energy + Delta-G solvation = -4064.714539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.30972 -41.05936 -38.30965 -37.17050 -36.88654 -36.32758 -34.78737 -34.30568 -32.08034 -31.74066 -30.09782 -28.72602 -27.80686 -26.07637 -25.13670 -24.76858 -22.76443 -22.60192 -21.86561 -21.63638 -20.43077 -19.20592 -18.43117 -18.36403 -18.16578 -17.08205 -16.98403 -16.76105 -16.62686 -16.04628 -15.84905 -15.57073 -15.27655 -15.01503 -14.75823 -14.64973 -14.45522 -14.26768 -14.03096 -13.79101 -13.60465 -13.54532 -13.25099 -13.02004 -12.91345 -12.80457 -12.69325 -12.51370 -12.41801 -12.33897 -12.06727 -11.97278 -11.82737 -11.79493 -11.77830 -11.50276 -11.41377 -11.27303 -10.87931 -10.86888 -10.68552 -10.05166 -9.55481 -8.38317 -6.45100 0.55480 1.25012 1.30271 1.34861 1.42793 1.46036 1.55855 2.17053 2.27344 2.96337 3.24915 3.28192 3.37243 3.56866 3.63269 3.86555 3.99612 4.04701 4.13913 4.25841 4.28307 4.34242 4.41695 4.50186 4.51696 4.55801 4.59280 4.63129 4.69950 4.76049 4.78546 4.83439 4.86813 4.89538 4.97648 5.00904 5.04322 5.12309 5.14767 5.26701 5.31234 5.39008 5.39666 5.44643 5.51810 5.57736 5.58829 6.15348 6.45206 6.57505 6.88945 7.06355 7.21763 7.51451 8.78834 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.001710 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.480068 B =16374.749055 C =16857.411874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 H 0.146 0.854 4 C 0.491 3.509 5 O -0.585 6.585 6 N -0.591 5.591 7 C 0.061 3.939 8 C 0.225 3.775 9 C -0.543 4.543 10 H 0.025 0.975 11 C 0.009 3.991 12 N -0.946 5.946 13 Si 0.950 3.050 14 H -0.281 1.281 15 H -0.275 1.275 16 H -0.228 1.228 17 N -0.270 5.270 18 C -0.028 4.028 19 C -0.034 4.034 20 C -0.028 4.028 21 C -0.104 4.104 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.120 4.120 25 C 0.071 3.929 26 O -0.600 6.600 27 N -0.298 5.298 28 N -0.127 5.127 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.269 0.731 38 H 0.222 0.778 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.051 0.949 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.907 -2.303 -23.941 31.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.022 3.978 3 H 0.163 0.837 4 C 0.277 3.723 5 O -0.466 6.466 6 N -0.321 5.321 7 C -0.080 4.080 8 C 0.103 3.897 9 C -0.582 4.582 10 H 0.043 0.957 11 C -0.189 4.189 12 N -0.586 5.586 13 Si 0.773 3.227 14 H -0.207 1.207 15 H -0.200 1.200 16 H -0.151 1.151 17 N -0.063 5.063 18 C -0.180 4.180 19 C -0.173 4.173 20 C -0.067 4.067 21 C -0.142 4.142 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.158 4.158 25 C -0.007 4.007 26 O -0.409 6.409 27 N -0.164 5.164 28 N -0.105 5.105 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.239 0.761 39 H 0.092 0.908 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -19.218 -2.138 -23.379 30.339 hybrid contribution 0.342 -0.588 0.589 0.899 sum -18.876 -2.725 -22.790 29.717 Atomic orbital electron populations 1.22522 0.85398 1.06149 1.07849 1.21811 1.00276 0.97274 0.78393 0.83698 1.20992 0.80629 0.84994 0.85731 1.90734 1.39571 1.29427 1.86826 1.47816 1.49845 1.29603 1.04883 1.22407 0.95113 0.85979 1.04520 1.19408 0.93774 0.92681 0.83830 1.21588 1.05440 1.19468 1.11703 0.95695 1.25922 0.95000 0.99484 0.98501 1.70067 1.16717 1.44295 1.27534 0.85684 0.81126 0.78281 0.77640 1.20693 1.20013 1.15071 1.47088 1.17056 1.22186 1.20016 1.23878 1.04333 0.93326 0.96417 1.22578 0.93526 1.01142 1.00054 1.20019 1.03816 0.91778 0.91073 1.21422 1.01765 0.98265 0.92723 1.21537 1.02701 0.97450 0.93376 1.21455 1.02303 0.97427 0.93844 1.21527 1.02551 0.98743 0.92994 1.22297 1.00075 0.89081 0.89235 1.86427 1.96104 1.37143 1.21194 1.74910 1.22328 1.04981 1.14220 1.78253 1.05331 1.23199 1.03720 0.89902 0.87677 0.85554 0.87892 0.90954 0.88957 0.91841 0.96330 0.92246 0.76099 0.90844 0.87317 0.91698 0.93254 0.92031 0.90512 0.91093 0.92108 0.92220 0.91513 0.92546 0.93092 0.75396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.47 71.98 0.61 -1.45 16 2 C 0.13 3.31 2.85 44.25 0.13 3.43 16 3 H 0.15 3.39 7.40 -2.39 -0.02 3.37 16 4 C 0.49 18.59 7.14 87.66 0.63 19.21 16 5 O -0.59 -29.46 16.00 -3.04 -0.05 -29.51 16 6 N -0.59 -21.35 2.86 -851.10 -2.43 -23.78 16 7 C 0.06 1.34 8.80 127.77 1.12 2.46 16 8 C 0.23 10.31 4.23 85.63 0.36 10.67 16 9 C -0.54 -31.57 9.94 25.60 0.25 -31.32 16 10 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 11 C 0.01 0.53 5.47 84.65 0.46 0.99 16 12 N -0.95 -60.19 13.96 21.45 0.30 -59.90 16 13 Si 0.95 43.53 27.47 68.60 1.88 45.42 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.23 -8.98 6.54 99.48 0.65 -8.33 16 17 N -0.27 -8.41 2.75 -330.73 -0.91 -9.32 16 18 C -0.03 -0.73 10.59 83.49 0.88 0.16 16 19 C -0.03 -0.95 6.50 41.60 0.27 -0.68 16 20 C -0.03 -0.53 5.79 29.85 0.17 -0.36 16 21 C -0.10 -1.75 5.19 30.59 0.16 -1.60 16 22 C -0.11 -1.45 5.21 30.59 0.16 -1.29 16 23 C -0.11 -1.34 5.21 30.59 0.16 -1.18 16 24 C -0.12 -1.54 5.58 30.59 0.17 -1.37 16 25 C 0.07 0.81 7.05 71.98 0.51 1.31 16 26 O -0.60 -8.21 13.66 -148.98 -2.03 -10.24 16 27 N -0.30 -10.88 12.40 -48.60 -0.60 -11.48 16 28 N -0.13 -4.88 13.17 37.02 0.49 -4.39 16 29 H 0.08 0.98 7.17 -2.39 -0.02 0.96 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.13 1.06 4.53 -2.38 -0.01 1.04 16 32 H 0.10 1.34 6.95 -2.38 -0.02 1.32 16 33 H 0.07 1.80 8.07 -2.39 -0.02 1.78 16 34 H 0.09 1.48 6.01 -2.39 -0.01 1.47 16 35 H 0.06 2.55 7.13 -2.39 -0.02 2.54 16 36 H 0.02 0.93 6.85 -2.38 -0.02 0.91 16 37 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.22 3.59 7.30 -2.91 -0.02 3.57 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.11 1.38 8.12 -2.39 -0.02 1.36 16 41 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 50 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 51 H 0.40 1.74 9.12 -74.05 -0.68 1.06 16 Total: -1.00 -93.02 413.78 2.89 -90.13 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.19 Total: 14.09 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.05 Total: -1.02 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.16 Total: -108.87 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -2.08 Total: -39.76 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -93.02 2.89 -90.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881116658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.850 kcal (2) G-P(sol) polarization free energy of solvation -93.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds