Wall clock time and date at job start Tue Mar 31 2020 21:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46857 * 2 1 4 4 C 1.45752 * 117.94917 * 90.00136 * 3 2 1 5 5 C 1.52923 * 110.48916 * 160.91873 * 4 3 2 6 6 C 1.53343 * 108.67220 * 50.75474 * 5 4 3 7 7 C 1.53069 * 108.42578 * 292.46765 * 6 5 4 8 8 H 1.09000 * 109.39984 * 288.85468 * 7 6 5 9 9 N 1.46496 * 109.40071 * 169.03099 * 7 6 5 10 10 C 1.34776 * 120.00133 * 155.00150 * 9 7 6 11 11 O 1.21584 * 119.99978 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00199 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00197 * 180.02562 * 12 10 9 14 14 C 1.53039 * 109.46081 * 205.00220 * 13 12 10 15 15 C 1.53192 * 109.31596 * 178.62823 * 14 13 12 16 16 N 1.46931 * 108.77565 * 54.62962 * 15 14 13 17 17 C 1.36933 * 120.63025 * 126.37324 * 16 15 14 18 18 H 1.08003 * 119.99756 * 332.13537 * 17 16 15 19 19 C 1.38810 * 119.99898 * 152.13970 * 17 16 15 20 20 N 1.31610 * 120.00090 * 342.99442 * 19 17 16 21 21 Si 1.86805 * 119.99845 * 162.99929 * 19 17 16 22 22 H 1.48502 * 109.46992 * 266.23159 * 21 19 17 23 23 H 1.48503 * 109.46878 * 146.23043 * 21 19 17 24 24 H 1.48501 * 109.47000 * 26.23150 * 21 19 17 25 25 C 1.46930 * 118.73686 * 306.64806 * 16 15 14 26 26 C 1.52764 * 109.00948 * 53.30825 * 25 16 15 27 27 C 1.33355 * 117.94818 * 269.99293 * 3 2 1 28 28 O 1.21286 * 118.24320 * 2.23361 * 27 3 2 29 29 H 1.09001 * 109.47398 * 300.00121 * 1 2 3 30 30 H 1.08997 * 109.46946 * 60.00087 * 1 2 3 31 31 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46684 * 239.99707 * 2 1 3 33 33 H 1.08997 * 109.46946 * 119.99913 * 2 1 3 34 34 H 1.09000 * 109.29783 * 40.61196 * 4 3 2 35 35 H 1.08997 * 109.13443 * 281.12531 * 4 3 2 36 36 H 1.09002 * 109.60330 * 290.99568 * 5 4 3 37 37 H 1.09001 * 109.60131 * 170.50710 * 5 4 3 38 38 H 1.09000 * 109.67298 * 172.73198 * 6 5 4 39 39 H 1.09000 * 109.67640 * 52.20290 * 6 5 4 40 40 H 0.97001 * 120.00064 * 334.99698 * 9 7 6 41 41 H 0.97001 * 119.99999 * 359.97438 * 12 10 9 42 42 H 1.08999 * 109.45775 * 324.96699 * 13 12 10 43 43 H 1.09001 * 109.50122 * 58.67232 * 14 13 12 44 44 H 1.09005 * 109.49578 * 298.57182 * 14 13 12 45 45 H 1.09001 * 109.58323 * 294.84684 * 15 14 13 46 46 H 1.08997 * 109.70591 * 174.48835 * 15 14 13 47 47 H 0.97003 * 120.00299 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.58125 * 173.14505 * 25 16 15 49 49 H 1.08997 * 109.58640 * 293.56844 * 25 16 15 50 50 H 1.09002 * 109.56068 * 185.55082 * 26 25 16 51 51 H 1.08999 * 109.35752 * 65.49633 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2460 2.0252 1.2875 5 6 3.1697 3.2332 1.1259 6 6 2.6262 4.1194 -0.0014 7 6 2.7704 3.3626 -1.3241 8 1 3.8240 3.3116 -1.5990 9 7 2.0278 4.0677 -2.3716 10 6 2.3831 3.9226 -3.6636 11 8 3.3203 3.2068 -3.9596 12 7 1.6996 4.5709 -4.6274 13 6 2.0855 4.4127 -6.0318 14 6 1.6342 5.6405 -6.8260 15 6 2.0693 5.4872 -8.2868 16 7 1.5534 4.2118 -8.8026 17 6 0.8073 4.1740 -9.9502 18 1 0.2191 5.0320 -10.2403 19 6 0.8069 3.0328 -10.7404 20 7 1.7514 2.1285 -10.5910 21 14 -0.5342 2.7806 -12.0161 22 1 -1.6331 1.9745 -11.4263 23 1 0.0279 2.0667 -13.1907 24 1 -1.0635 4.1000 -12.4454 25 6 1.8481 2.9785 -8.0602 26 6 1.4200 3.1594 -6.6050 27 6 2.2267 1.9704 -1.1780 28 8 1.9629 1.3486 -2.1854 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7037 1.3108 1.9717 35 1 1.2907 2.3544 1.6963 36 1 4.1742 2.8941 0.8726 37 1 3.1963 3.8003 2.0563 38 1 3.1961 5.0476 -0.0456 39 1 1.5750 4.3421 0.1813 40 1 1.2804 4.6391 -2.1355 41 1 0.9517 5.1417 -4.3913 42 1 3.1686 4.3130 -6.1018 43 1 2.0901 6.5355 -6.4026 44 1 0.5486 5.7267 -6.7770 45 1 3.1577 5.4919 -8.3462 46 1 1.6676 6.3099 -8.8783 47 1 1.7514 1.3312 -11.1435 48 1 1.2984 2.1467 -8.5008 49 1 2.9181 2.7745 -8.1008 50 1 1.7237 2.2883 -6.0243 51 1 0.3366 3.2689 -6.5581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917314560.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:38 Heat of formation + Delta-G solvation = -40.579881 kcal Electronic energy + Delta-G solvation = -30610.122919 eV Core-core repulsion = 26545.005214 eV Total energy + Delta-G solvation = -4065.117705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02095 -39.52950 -37.42759 -36.70933 -35.66016 -34.20199 -33.28289 -31.94189 -30.36363 -29.95459 -29.54792 -28.57342 -25.18300 -24.64305 -23.62835 -22.31656 -22.11589 -21.89010 -20.48879 -19.35088 -18.99662 -17.90636 -17.29565 -16.91625 -16.61343 -16.34263 -15.60770 -14.87328 -14.71324 -14.50842 -14.44316 -14.21166 -14.03298 -13.86693 -13.69054 -13.53969 -13.38478 -12.91095 -12.79309 -12.59908 -12.38624 -12.23399 -12.14666 -11.85638 -11.69669 -11.42327 -11.36819 -11.18081 -11.03142 -10.83337 -10.68058 -10.28561 -10.15160 -10.12179 -9.97884 -9.83551 -9.65376 -9.43755 -8.98736 -8.94085 -8.51665 -8.28911 -6.59997 -5.70228 -3.13374 2.35316 2.70248 3.02741 3.43378 3.49692 3.51345 3.57480 4.19885 4.23646 4.27003 4.30933 4.54253 4.56095 4.81372 4.86539 4.91596 5.02834 5.08418 5.19750 5.30369 5.32036 5.41366 5.44382 5.48027 5.49575 5.55947 5.66196 5.75126 5.77041 5.94733 5.95343 6.20465 6.23489 6.33586 6.36857 6.48339 6.60399 6.70930 6.74930 6.88638 7.04311 7.05624 7.19986 7.26664 7.51586 7.79755 7.87651 8.10457 8.25943 8.53444 8.92455 9.29172 9.92804 10.49833 11.38209 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.002461 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.929130 B =11372.932870 C =12354.817282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.609 5.609 4 C 0.113 3.887 5 C -0.133 4.133 6 C -0.129 4.129 7 C 0.159 3.841 8 H 0.118 0.882 9 N -0.737 5.737 10 C 0.708 3.292 11 O -0.573 6.573 12 N -0.739 5.739 13 C 0.171 3.829 14 C -0.138 4.138 15 C 0.149 3.851 16 N -0.593 5.593 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.146 4.146 27 C 0.494 3.506 28 O -0.513 6.513 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.395 0.605 41 H 0.388 0.612 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.254 0.746 48 H 0.088 0.912 49 H 0.020 0.980 50 H 0.056 0.944 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 4.214 30.274 30.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.345 5.345 4 C -0.010 4.010 5 C -0.171 4.171 6 C -0.167 4.167 7 C 0.049 3.951 8 H 0.135 0.865 9 N -0.394 5.394 10 C 0.408 3.592 11 O -0.449 6.449 12 N -0.393 5.393 13 C 0.067 3.933 14 C -0.178 4.178 15 C 0.022 3.978 16 N -0.316 5.316 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.048 3.952 26 C -0.187 4.187 27 C 0.279 3.721 28 O -0.386 6.386 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.229 0.771 41 H 0.221 0.779 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.038 0.962 50 H 0.075 0.925 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.618 3.084 29.258 29.426 hybrid contribution -1.513 0.230 -0.215 1.545 sum -0.895 3.314 29.043 29.245 Atomic orbital electron populations 1.22074 0.95861 1.02220 1.02135 1.21470 0.94618 0.82618 1.03178 1.47488 1.66538 1.14740 1.05752 1.21409 0.99434 0.95140 0.84993 1.21851 0.99813 0.95910 0.99508 1.21954 1.02867 0.99350 0.92573 1.20526 0.98444 0.88314 0.87773 0.86466 1.44850 1.37529 1.52150 1.04845 1.15886 0.82770 0.80368 0.80188 1.90938 1.31005 1.41685 1.81264 1.45460 1.35713 1.51276 1.06803 1.20882 0.99911 0.95996 0.76537 1.22342 1.01139 0.95746 0.98570 1.20831 0.96081 0.90288 0.90613 1.44104 1.60679 1.01098 1.25689 1.19182 1.19234 1.01011 0.98898 0.91678 1.25061 0.97720 0.99108 0.97789 1.70043 1.31325 1.11477 1.41583 0.86285 0.81773 0.77835 0.80911 1.21530 1.21800 1.20436 1.20666 0.97979 0.90430 0.86123 1.22491 0.99753 0.96509 0.99925 1.20806 0.78732 0.89576 0.82955 1.90808 1.49094 1.63317 1.35403 0.92893 0.92119 0.91666 0.89564 0.90815 0.90598 0.91830 0.90399 0.89109 0.89647 0.90578 0.77120 0.77933 0.90139 0.92724 0.91989 0.96208 0.92406 0.93620 0.89410 0.96199 0.92539 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 10.23 37.16 0.38 -1.03 16 2 C 0.10 0.94 5.92 -4.04 -0.02 0.91 16 3 N -0.61 -5.63 2.81 -174.97 -0.49 -6.13 16 4 C 0.11 0.57 6.39 -4.48 -0.03 0.54 16 5 C -0.13 -0.53 6.02 -26.59 -0.16 -0.69 16 6 C -0.13 -0.71 5.50 -26.52 -0.15 -0.86 16 7 C 0.16 1.70 2.70 -69.30 -0.19 1.52 16 8 H 0.12 1.45 7.58 -51.93 -0.39 1.06 16 9 N -0.74 -8.75 4.97 -60.03 -0.30 -9.05 16 10 C 0.71 11.89 7.95 -86.92 -0.69 11.19 16 11 O -0.57 -12.42 15.21 3.50 0.05 -12.36 16 12 N -0.74 -11.50 5.08 -58.64 -0.30 -11.80 16 13 C 0.17 3.23 2.42 -67.89 -0.16 3.07 16 14 C -0.14 -2.41 5.55 -26.61 -0.15 -2.56 16 15 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 16 N -0.59 -15.46 3.00 -172.57 -0.52 -15.97 16 17 C -0.25 -7.15 9.58 -15.06 -0.14 -7.30 16 18 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 19 C 0.00 0.06 4.91 -17.44 -0.09 -0.03 16 20 N -0.90 -27.27 11.20 55.49 0.62 -26.65 16 21 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.17 4.53 5.28 -3.93 -0.02 4.51 16 26 C -0.15 -3.24 5.63 -26.83 -0.15 -3.39 16 27 C 0.49 6.43 7.19 -11.87 -0.09 6.35 16 28 O -0.51 -9.52 14.96 3.76 0.06 -9.47 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.01 7.20 -51.93 -0.37 0.64 16 33 H 0.07 0.46 7.86 -51.93 -0.41 0.05 16 34 H 0.08 0.27 7.92 -51.93 -0.41 -0.15 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.36 8.10 -51.93 -0.42 -0.07 16 40 H 0.39 3.35 8.60 -40.82 -0.35 3.00 16 41 H 0.39 4.72 8.62 -40.82 -0.35 4.37 16 42 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.09 2.54 6.06 -51.93 -0.31 2.22 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 51 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -37.97 399.39 -10.44 -48.41 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.87 Total: 4.30 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: -1.68 Total: 15.40 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -0.98 Total: -69.60 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.11 Total: -21.83 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.97 -10.44 -48.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917314560.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.830 kcal (2) G-P(sol) polarization free energy of solvation -37.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds