Wall clock time and date at job start Tue Mar 31 2020 21:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46857 * 2 1 4 4 C 1.45752 * 117.94917 * 90.00136 * 3 2 1 5 5 C 1.52923 * 110.48916 * 160.91873 * 4 3 2 6 6 C 1.53343 * 108.67220 * 50.75474 * 5 4 3 7 7 C 1.53069 * 108.42578 * 292.46765 * 6 5 4 8 8 H 1.09000 * 109.39984 * 288.85468 * 7 6 5 9 9 N 1.46496 * 109.40071 * 169.03099 * 7 6 5 10 10 C 1.34776 * 120.00133 * 155.00150 * 9 7 6 11 11 O 1.21584 * 119.99978 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00199 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00197 * 180.02562 * 12 10 9 14 14 C 1.53039 * 109.46081 * 205.00220 * 13 12 10 15 15 C 1.53192 * 109.31596 * 178.62823 * 14 13 12 16 16 N 1.46931 * 108.77565 * 54.62962 * 15 14 13 17 17 C 1.36933 * 120.63025 * 126.37324 * 16 15 14 18 18 H 1.08003 * 119.99756 * 332.13537 * 17 16 15 19 19 C 1.38810 * 119.99898 * 152.13970 * 17 16 15 20 20 N 1.31610 * 120.00090 * 342.99442 * 19 17 16 21 21 Si 1.86805 * 119.99845 * 162.99929 * 19 17 16 22 22 H 1.48502 * 109.46992 * 266.23159 * 21 19 17 23 23 H 1.48503 * 109.46878 * 146.23043 * 21 19 17 24 24 H 1.48501 * 109.47000 * 26.23150 * 21 19 17 25 25 C 1.46930 * 118.73686 * 306.64806 * 16 15 14 26 26 C 1.52764 * 109.00948 * 53.30825 * 25 16 15 27 27 C 1.33355 * 117.94818 * 269.99293 * 3 2 1 28 28 O 1.21286 * 118.24320 * 2.23361 * 27 3 2 29 29 H 1.09001 * 109.47398 * 300.00121 * 1 2 3 30 30 H 1.08997 * 109.46946 * 60.00087 * 1 2 3 31 31 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46684 * 239.99707 * 2 1 3 33 33 H 1.08997 * 109.46946 * 119.99913 * 2 1 3 34 34 H 1.09000 * 109.29783 * 40.61196 * 4 3 2 35 35 H 1.08997 * 109.13443 * 281.12531 * 4 3 2 36 36 H 1.09002 * 109.60330 * 290.99568 * 5 4 3 37 37 H 1.09001 * 109.60131 * 170.50710 * 5 4 3 38 38 H 1.09000 * 109.67298 * 172.73198 * 6 5 4 39 39 H 1.09000 * 109.67640 * 52.20290 * 6 5 4 40 40 H 0.97001 * 120.00064 * 334.99698 * 9 7 6 41 41 H 0.97001 * 119.99999 * 359.97438 * 12 10 9 42 42 H 1.08999 * 109.45775 * 324.96699 * 13 12 10 43 43 H 1.09001 * 109.50122 * 58.67232 * 14 13 12 44 44 H 1.09005 * 109.49578 * 298.57182 * 14 13 12 45 45 H 1.09001 * 109.58323 * 294.84684 * 15 14 13 46 46 H 1.08997 * 109.70591 * 174.48835 * 15 14 13 47 47 H 0.97003 * 120.00299 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.58125 * 173.14505 * 25 16 15 49 49 H 1.08997 * 109.58640 * 293.56844 * 25 16 15 50 50 H 1.09002 * 109.56068 * 185.55082 * 26 25 16 51 51 H 1.08999 * 109.35752 * 65.49633 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2460 2.0252 1.2875 5 6 3.1697 3.2332 1.1259 6 6 2.6262 4.1194 -0.0014 7 6 2.7704 3.3626 -1.3241 8 1 3.8240 3.3116 -1.5990 9 7 2.0278 4.0677 -2.3716 10 6 2.3831 3.9226 -3.6636 11 8 3.3203 3.2068 -3.9596 12 7 1.6996 4.5709 -4.6274 13 6 2.0855 4.4127 -6.0318 14 6 1.6342 5.6405 -6.8260 15 6 2.0693 5.4872 -8.2868 16 7 1.5534 4.2118 -8.8026 17 6 0.8073 4.1740 -9.9502 18 1 0.2191 5.0320 -10.2403 19 6 0.8069 3.0328 -10.7404 20 7 1.7514 2.1285 -10.5910 21 14 -0.5342 2.7806 -12.0161 22 1 -1.6331 1.9745 -11.4263 23 1 0.0279 2.0667 -13.1907 24 1 -1.0635 4.1000 -12.4454 25 6 1.8481 2.9785 -8.0602 26 6 1.4200 3.1594 -6.6050 27 6 2.2267 1.9704 -1.1780 28 8 1.9629 1.3486 -2.1854 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7037 1.3108 1.9717 35 1 1.2907 2.3544 1.6963 36 1 4.1742 2.8941 0.8726 37 1 3.1963 3.8003 2.0563 38 1 3.1961 5.0476 -0.0456 39 1 1.5750 4.3421 0.1813 40 1 1.2804 4.6391 -2.1355 41 1 0.9517 5.1417 -4.3913 42 1 3.1686 4.3130 -6.1018 43 1 2.0901 6.5355 -6.4026 44 1 0.5486 5.7267 -6.7770 45 1 3.1577 5.4919 -8.3462 46 1 1.6676 6.3099 -8.8783 47 1 1.7514 1.3312 -11.1435 48 1 1.2984 2.1467 -8.5008 49 1 2.9181 2.7745 -8.1008 50 1 1.7237 2.2883 -6.0243 51 1 0.3366 3.2689 -6.5581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917314560.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:37 Heat of formation + Delta-G solvation = -69.471469 kcal Electronic energy + Delta-G solvation = -30611.375752 eV Core-core repulsion = 26545.005214 eV Total energy + Delta-G solvation = -4066.370538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.95814 -40.82041 -39.10190 -37.55516 -36.69099 -35.89198 -34.34765 -33.64665 -31.81696 -31.33528 -30.88948 -29.57718 -26.90440 -25.54475 -24.55282 -23.91272 -23.53861 -22.95410 -21.82460 -21.08566 -19.89455 -19.14995 -18.64142 -18.12010 -17.77185 -17.31802 -16.91146 -16.51920 -16.00475 -15.81411 -15.52968 -15.37844 -15.28613 -15.09317 -14.83633 -14.74225 -14.59092 -14.36898 -14.23876 -14.03586 -13.51252 -13.20661 -13.09001 -13.02547 -12.88206 -12.64535 -12.61527 -12.41816 -12.25220 -12.14047 -12.03112 -12.00135 -11.87606 -11.77035 -11.54529 -11.44748 -11.20733 -11.12828 -10.59922 -10.19899 -9.75563 -9.70880 -8.73417 -7.87918 -5.34949 1.32771 1.45845 1.48087 1.57384 1.83325 2.00544 2.32341 2.50695 3.22998 3.30312 3.54698 3.64780 3.66570 3.83775 3.87435 4.01396 4.08209 4.13245 4.23746 4.33542 4.36430 4.44147 4.45640 4.55207 4.65876 4.66666 4.78899 4.79336 4.81925 4.87095 4.99219 5.03259 5.07014 5.08257 5.09203 5.12811 5.21896 5.27021 5.30449 5.40981 5.44453 5.55076 5.60467 5.62870 5.66537 5.99136 6.37317 6.46477 7.10851 7.12153 7.21461 7.65468 7.82752 8.36508 9.19540 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.002461 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.929130 B =11372.932870 C =12354.817282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.600 5.600 4 C 0.102 3.898 5 C -0.128 4.128 6 C -0.117 4.117 7 C 0.156 3.844 8 H 0.094 0.906 9 N -0.717 5.717 10 C 0.703 3.297 11 O -0.628 6.628 12 N -0.725 5.725 13 C 0.183 3.817 14 C -0.118 4.118 15 C 0.141 3.859 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.077 0.923 19 C -0.058 4.058 20 N -0.940 5.940 21 Si 0.972 3.028 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.260 1.260 25 C 0.186 3.814 26 C -0.129 4.129 27 C 0.485 3.515 28 O -0.585 6.585 29 H 0.077 0.923 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.415 0.585 41 H 0.410 0.590 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.012 0.988 46 H 0.072 0.928 47 H 0.249 0.751 48 H 0.052 0.948 49 H -0.013 1.013 50 H 0.031 0.969 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 7.093 33.930 34.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.333 5.333 4 C -0.019 4.019 5 C -0.166 4.166 6 C -0.155 4.155 7 C 0.046 3.954 8 H 0.112 0.888 9 N -0.374 5.374 10 C 0.402 3.598 11 O -0.508 6.508 12 N -0.380 5.380 13 C 0.077 3.923 14 C -0.158 4.158 15 C 0.015 3.985 16 N -0.333 5.333 17 C -0.390 4.390 18 H 0.095 0.905 19 C -0.253 4.253 20 N -0.587 5.587 21 Si 0.799 3.201 22 H -0.216 1.216 23 H -0.224 1.224 24 H -0.184 1.184 25 C 0.060 3.940 26 C -0.170 4.170 27 C 0.271 3.729 28 O -0.464 6.464 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.252 0.748 41 H 0.246 0.754 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.030 0.970 46 H 0.091 0.909 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.005 0.995 50 H 0.050 0.950 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.113 6.052 33.046 33.614 hybrid contribution -0.931 -0.702 -1.236 1.699 sum -2.044 5.349 31.810 32.321 Atomic orbital electron populations 1.22001 0.95298 1.02735 1.01417 1.21562 0.95094 0.82701 1.03039 1.47623 1.64561 1.14700 1.06413 1.21841 1.01175 0.96024 0.82821 1.21918 0.98887 0.95483 1.00346 1.21988 1.04537 0.99466 0.89506 1.20754 0.96711 0.88051 0.89853 0.88800 1.44642 1.37810 1.51672 1.03324 1.16153 0.82218 0.79708 0.81673 1.90908 1.33528 1.43930 1.82405 1.45037 1.36284 1.51479 1.05195 1.20482 0.98013 0.95183 0.78599 1.22132 1.02127 0.96162 0.95341 1.21072 0.95688 0.88437 0.93273 1.44339 1.61000 1.02373 1.25549 1.19616 1.19129 1.01234 0.99068 0.90512 1.25938 0.99881 0.99104 1.00376 1.70228 1.33461 1.11988 1.42993 0.85186 0.78655 0.78240 0.77976 1.21581 1.22365 1.18429 1.20312 0.95347 0.90031 0.88354 1.22226 1.00018 0.97638 0.97080 1.21285 0.78172 0.90242 0.83157 1.90783 1.52538 1.65070 1.38004 0.90430 0.95714 0.90689 0.93462 0.87095 0.88297 0.89602 0.91207 0.85401 0.87848 0.88771 0.74759 0.75350 0.92773 0.88564 0.90625 0.96953 0.90927 0.94246 0.92994 0.99539 0.95010 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.23 71.98 0.74 -1.83 16 2 C 0.10 1.75 5.92 86.38 0.51 2.26 16 3 N -0.60 -10.43 2.81 -826.65 -2.32 -12.75 16 4 C 0.10 0.63 6.39 86.49 0.55 1.18 16 5 C -0.13 -0.51 6.02 30.68 0.18 -0.33 16 6 C -0.12 -0.89 5.50 30.73 0.17 -0.72 16 7 C 0.16 3.25 2.70 44.10 0.12 3.37 16 8 H 0.09 2.43 7.58 -2.39 -0.02 2.41 16 9 N -0.72 -16.47 4.97 -462.11 -2.30 -18.77 16 10 C 0.70 23.94 7.95 179.05 1.42 25.36 16 11 O -0.63 -28.80 15.21 -2.27 -0.03 -28.83 16 12 N -0.72 -21.95 5.08 -457.70 -2.33 -24.27 16 13 C 0.18 6.96 2.42 45.02 0.11 7.07 16 14 C -0.12 -3.86 5.55 30.67 0.17 -3.69 16 15 C 0.14 5.93 6.52 86.36 0.56 6.49 16 16 N -0.61 -32.37 3.00 -699.90 -2.10 -34.47 16 17 C -0.26 -14.79 9.58 84.03 0.81 -13.99 16 18 H 0.08 4.12 7.89 -2.91 -0.02 4.09 16 19 C -0.06 -3.41 4.91 84.86 0.42 -2.99 16 20 N -0.94 -59.64 11.20 21.65 0.24 -59.39 16 21 Si 0.97 46.70 29.59 68.60 2.03 48.73 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.19 10.28 5.28 86.22 0.45 10.73 16 26 C -0.13 -5.98 5.63 30.53 0.17 -5.80 16 27 C 0.48 12.95 7.19 87.71 0.63 13.58 16 28 O -0.58 -23.44 14.96 -1.34 -0.02 -23.46 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.22 7.20 -2.39 -0.02 1.20 16 33 H 0.11 1.11 7.86 -2.39 -0.02 1.09 16 34 H 0.10 0.24 7.92 -2.39 -0.02 0.22 16 35 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.07 0.44 8.12 -2.39 -0.02 0.42 16 37 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 0.44 8.10 -2.39 -0.02 0.42 16 40 H 0.41 6.04 8.60 -92.71 -0.80 5.25 16 41 H 0.41 8.87 8.62 -92.71 -0.80 8.07 16 42 H 0.05 2.39 7.58 -2.39 -0.02 2.37 16 43 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.07 2.83 7.93 -2.39 -0.02 2.81 16 47 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 48 H 0.05 3.21 6.06 -2.38 -0.01 3.20 16 49 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 50 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -92.30 399.39 -0.47 -92.77 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.67 Total: 19.76 kcal Atomic # 6 Polarization: 33.67 SS G_CDS: 7.02 Total: 40.69 kcal Atomic # 7 Polarization: -140.85 SS G_CDS: -8.80 Total: -149.66 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.05 Total: -52.29 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -92.30 -0.47 -92.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917314560.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.300 kcal (2) G-P(sol) polarization free energy of solvation -92.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds