Wall clock time and date at job start Tue Mar 31 2020 22:28:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.47010 * 111.00118 * 2 1
4 4 C 1.53097 * 109.25664 * 177.60788 * 3 2 1
5 5 O 1.43016 * 109.25861 * 56.85363 * 4 3 2
6 6 C 1.43013 * 113.73398 * 301.32748 * 5 4 3
7 7 C 1.47016 * 110.99878 * 236.36711 * 2 1 3
8 8 H 1.08997 * 109.50503 * 62.45570 * 7 2 1
9 9 C 1.50704 * 109.50572 * 302.32748 * 7 2 1
10 10 O 1.21284 * 120.00055 * 332.21321 * 9 7 2
11 11 N 1.34772 * 119.99833 * 152.21343 * 9 7 2
12 12 C 1.47077 * 120.88316 * 4.84745 * 11 9 7
13 13 C 1.53695 * 108.27278 * 128.75621 * 12 11 9
14 14 N 1.46895 * 109.26166 * 54.08884 * 13 12 11
15 15 C 1.46900 * 111.00326 * 172.60743 * 14 13 12
16 16 C 1.53946 * 113.74280 * 40.97343 * 15 14 13
17 17 N 1.47585 * 86.11555 * 222.04973 * 16 15 14
18 18 C 1.36935 * 134.49143 * 204.64088 * 17 16 15
19 19 H 1.08003 * 119.99937 * 179.97438 * 18 17 16
20 20 C 1.38813 * 119.99970 * 0.02562 * 18 17 16
21 21 N 1.31622 * 120.00147 * 359.97438 * 20 18 17
22 22 Si 1.86793 * 119.99818 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47644 * 59.99672 * 22 20 18
24 24 H 1.48504 * 109.47105 * 179.97438 * 22 20 18
25 25 H 1.48500 * 109.47416 * 299.99323 * 22 20 18
26 26 C 1.47588 * 91.01351 * 24.63762 * 17 16 15
27 27 C 1.46904 * 111.26217 * 296.75241 * 14 13 12
28 28 C 1.47084 * 120.88122 * 185.12887 * 11 9 7
29 29 H 1.08999 * 109.47236 * 189.14177 * 1 2 3
30 30 H 1.09004 * 109.46709 * 309.13830 * 1 2 3
31 31 H 1.08995 * 109.47468 * 69.13835 * 1 2 3
32 32 H 1.09003 * 109.50690 * 57.67812 * 3 2 1
33 33 H 1.09001 * 109.50967 * 297.54728 * 3 2 1
34 34 H 1.08998 * 109.51263 * 296.91252 * 4 3 2
35 35 H 1.09001 * 109.50834 * 176.78287 * 4 3 2
36 36 H 1.09001 * 109.51173 * 298.73436 * 6 5 4
37 37 H 1.09002 * 109.54190 * 178.63038 * 6 5 4
38 38 H 1.09001 * 109.62924 * 248.52510 * 12 11 9
39 39 H 1.09001 * 109.62939 * 9.10492 * 12 11 9
40 40 H 1.09003 * 109.65139 * 294.07585 * 13 12 11
41 41 H 1.09009 * 109.41750 * 173.95125 * 13 12 11
42 42 H 1.09001 * 112.94264 * 172.70363 * 15 14 13
43 43 H 1.09001 * 113.76925 * 336.34779 * 16 15 14
44 44 H 1.09000 * 113.76839 * 107.74563 * 16 15 14
45 45 H 0.96994 * 120.00097 * 180.02562 * 21 20 18
46 46 H 1.08998 * 113.76776 * 221.06016 * 26 17 16
47 47 H 1.08996 * 113.76678 * 89.66177 * 26 17 16
48 48 H 1.08995 * 109.49927 * 303.14241 * 27 14 13
49 49 H 1.09008 * 109.49018 * 183.06449 * 27 14 13
50 50 H 1.08999 * 109.62655 * 350.89542 * 28 11 9
51 51 H 1.08999 * 109.62947 * 111.27634 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9958 1.3725 0.0000
4 6 3.5249 1.3263 0.0603
5 8 4.0174 0.5574 -1.0404
6 6 3.5248 -0.7849 -1.0710
7 6 1.9958 -0.7602 -1.1428
8 1 1.6827 -0.2842 -2.0720
9 6 1.4669 -2.1706 -1.0957
10 8 1.1716 -2.6723 -0.0317
11 7 1.3221 -2.8743 -2.2359
12 6 1.7722 -2.3255 -3.5241
13 6 2.6632 -3.3736 -4.2095
14 7 1.9345 -4.6460 -4.2979
15 6 2.6797 -5.6249 -5.1005
16 6 4.1955 -5.6216 -4.8317
17 7 4.3536 -5.7438 -6.2940
18 6 5.3340 -6.2321 -7.1158
19 1 5.2030 -6.2060 -8.1875
20 6 6.4959 -6.7618 -6.5713
21 7 6.6554 -6.7942 -5.2652
22 14 7.8336 -7.4273 -7.6923
23 1 8.3173 -6.3428 -8.5840
24 1 8.9627 -7.9320 -6.8702
25 1 7.2849 -8.5359 -8.5140
26 6 3.0305 -5.1283 -6.5148
27 6 1.6320 -5.1805 -2.9634
28 6 0.7042 -4.2091 -2.2260
29 1 -0.3634 -1.0146 0.1633
30 1 -0.3633 0.6487 0.7971
31 1 -0.3634 0.3659 -0.9602
32 1 1.6134 1.9091 0.8683
33 1 1.6827 1.8826 -0.9109
34 1 3.8386 0.8643 0.9964
35 1 3.9222 2.3397 0.0029
36 1 3.8384 -1.3085 -0.1678
37 1 3.9220 -1.2992 -1.9462
38 1 0.9078 -2.1085 -4.1517
39 1 2.3430 -1.4127 -3.3539
40 1 3.5747 -3.5160 -3.6289
41 1 2.9200 -3.0311 -5.2121
42 1 2.2314 -6.6183 -5.0828
43 1 4.5678 -4.6805 -4.4268
44 1 4.5454 -6.4926 -4.2776
45 1 7.4674 -7.1639 -4.8847
46 1 2.4502 -5.6055 -7.3045
47 1 3.0605 -4.0424 -6.6042
48 1 2.5577 -5.2977 -2.4001
49 1 1.1408 -6.1486 -3.0621
50 1 0.5686 -4.5421 -1.1970
51 1 -0.2624 -4.1688 -2.7281
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000941383560.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:28:13
Heat of formation + Delta-G solvation = -2.677910 kcal
Electronic energy + Delta-G solvation = -31307.482963 eV
Core-core repulsion = 27244.008812 eV
Total energy + Delta-G solvation = -4063.474152 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.92221 -40.78282 -39.71611 -37.98887 -36.61639 -35.26241 -33.90055 -32.89209
-31.83538 -30.00257 -29.62833 -27.86045 -26.63187 -25.80920 -25.30756 -24.83473
-24.35783 -22.84976 -21.64233 -20.61354 -19.62081 -18.73995 -18.53044 -17.72847
-17.58333 -17.05967 -16.94835 -16.69495 -16.32845 -16.16826 -15.92940 -15.73843
-15.66663 -15.46290 -15.26261 -14.88271 -14.55863 -14.07802 -13.91999 -13.80949
-13.45966 -13.41606 -13.30989 -13.19656 -13.10056 -12.78551 -12.73499 -12.68491
-12.32340 -12.28046 -12.23807 -12.08971 -11.85658 -11.76187 -11.73606 -11.37417
-11.08102 -10.84176 -10.63495 -9.83992 -9.45673 -9.26322 -8.85931 -7.91177
-5.25332 1.39107 1.44150 1.47453 1.53578 1.75469 2.44582 2.63030
2.77285 2.87042 3.28774 3.34722 3.49022 3.62162 3.79557 3.83627
3.86185 3.90568 3.98682 4.10383 4.15817 4.22389 4.22886 4.35068
4.42624 4.44836 4.45527 4.48574 4.57037 4.60363 4.65809 4.70759
4.78659 4.80120 4.87619 4.90241 4.94843 4.96707 4.99475 5.07625
5.22641 5.36888 5.38027 5.48797 5.69956 5.87482 5.90395 5.97639
6.05081 6.11824 6.31460 6.89924 7.03927 7.59884 8.54929 9.24496
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.016567 B = 0.002766 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1689.682078 B =10121.155024 C =11118.224160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.540 5.540
3 C 0.022 3.978
4 C 0.052 3.948
5 O -0.389 6.389
6 C 0.077 3.923
7 C 0.039 3.961
8 H 0.088 0.912
9 C 0.523 3.477
10 O -0.558 6.558
11 N -0.611 5.611
12 C 0.117 3.883
13 C 0.036 3.964
14 N -0.513 5.513
15 C 0.065 3.935
16 C 0.133 3.867
17 N -0.639 5.639
18 C -0.233 4.233
19 H 0.086 0.914
20 C -0.069 4.069
21 N -0.955 5.955
22 Si 0.979 3.021
23 H -0.276 1.276
24 H -0.297 1.297
25 H -0.274 1.274
26 C 0.129 3.871
27 C 0.044 3.956
28 C 0.125 3.875
29 H 0.057 0.943
30 H 0.089 0.911
31 H 0.036 0.964
32 H 0.111 0.889
33 H 0.053 0.947
34 H 0.057 0.943
35 H 0.127 0.873
36 H 0.051 0.949
37 H 0.106 0.894
38 H 0.101 0.899
39 H 0.101 0.899
40 H 0.024 0.976
41 H 0.094 0.906
42 H 0.103 0.897
43 H 0.020 0.980
44 H 0.027 0.973
45 H 0.246 0.754
46 H 0.059 0.941
47 H 0.055 0.945
48 H 0.016 0.984
49 H 0.100 0.900
50 H 0.085 0.915
51 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.111 17.417 8.713 24.650
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.266 5.266
3 C -0.106 4.106
4 C -0.024 4.024
5 O -0.307 6.307
6 C 0.000 4.000
7 C -0.073 4.073
8 H 0.106 0.894
9 C 0.311 3.689
10 O -0.435 6.435
11 N -0.344 5.344
12 C -0.005 4.005
13 C -0.093 4.093
14 N -0.237 5.237
15 C -0.044 4.044
16 C 0.006 3.994
17 N -0.367 5.367
18 C -0.361 4.361
19 H 0.104 0.896
20 C -0.262 4.262
21 N -0.604 5.604
22 Si 0.807 3.193
23 H -0.202 1.202
24 H -0.223 1.223
25 H -0.200 1.200
26 C 0.004 3.996
27 C -0.084 4.084
28 C 0.003 3.997
29 H 0.075 0.925
30 H 0.107 0.893
31 H 0.055 0.945
32 H 0.129 0.871
33 H 0.072 0.928
34 H 0.075 0.925
35 H 0.145 0.855
36 H 0.069 0.931
37 H 0.124 0.876
38 H 0.119 0.881
39 H 0.119 0.881
40 H 0.042 0.958
41 H 0.112 0.888
42 H 0.121 0.879
43 H 0.038 0.962
44 H 0.046 0.954
45 H 0.055 0.945
46 H 0.077 0.923
47 H 0.073 0.927
48 H 0.035 0.965
49 H 0.118 0.882
50 H 0.104 0.896
51 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -15.162 16.951 9.255 24.553
hybrid contribution 1.621 -0.662 -0.493 1.819
sum -13.540 16.289 8.762 22.923
Atomic orbital electron populations
1.22438 0.85592 1.02777 1.01458 1.61937 1.09548 1.14346 1.40817
1.22933 0.96095 0.88116 1.03420 1.22986 0.92679 0.97454 0.89293
1.88029 1.69929 1.23200 1.49549 1.22485 0.89716 0.84816 1.03033
1.22292 0.97551 0.92098 0.95363 0.89429 1.20479 0.77560 0.87727
0.83180 1.90673 1.51349 1.71342 1.30168 1.48330 1.60170 1.18439
1.07506 1.22157 0.99442 0.95863 0.83085 1.22687 0.94714 0.90378
1.01508 1.62082 1.44517 1.03428 1.13667 1.23848 0.90860 0.95732
0.94009 1.22801 0.93137 0.97240 0.86220 1.46138 1.17779 1.69503
1.03230 1.19392 0.95524 1.31482 0.89723 0.89604 1.25641 1.00526
1.02681 0.97320 1.70023 1.27567 1.51985 1.10867 0.85149 0.78275
0.78390 0.77521 1.20236 1.22321 1.20030 1.22830 0.84657 0.96776
0.95319 1.22440 0.98199 0.99118 0.88667 1.21696 0.96201 0.80564
1.01230 0.92454 0.89277 0.94510 0.87056 0.92834 0.92510 0.85474
0.93076 0.87618 0.88135 0.88060 0.95822 0.88827 0.87857 0.96238
0.95405 0.94474 0.92323 0.92704 0.96531 0.88196 0.89622 0.88714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.43 9.13 127.69 1.17 1.59 16
2 N -0.54 -10.64 4.53 -900.49 -4.08 -14.71 16
3 C 0.02 0.30 5.65 86.31 0.49 0.79 16
4 C 0.05 0.79 7.01 72.01 0.50 1.30 16
5 O -0.39 -8.31 10.83 -148.98 -1.61 -9.92 16
6 C 0.08 1.72 6.10 72.01 0.44 2.16 16
7 C 0.04 0.81 1.51 44.18 0.07 0.87 16
8 H 0.09 1.52 6.64 -2.39 -0.02 1.50 16
9 C 0.52 13.20 5.94 87.66 0.52 13.72 16
10 O -0.56 -18.04 14.80 -3.04 -0.05 -18.08 16
11 N -0.61 -13.78 3.00 -817.05 -2.45 -16.23 16
12 C 0.12 2.23 6.30 86.50 0.54 2.78 16
13 C 0.04 0.94 4.58 86.54 0.40 1.33 16
14 N -0.51 -14.24 4.76 -875.06 -4.17 -18.41 16
15 C 0.06 2.30 4.05 46.67 0.19 2.49 16
16 C 0.13 6.27 6.81 86.48 0.59 6.86 16
17 N -0.64 -32.39 3.70 -717.30 -2.65 -35.05 16
18 C -0.23 -13.03 10.70 84.03 0.90 -12.13 16
19 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16
20 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16
21 N -0.96 -58.52 11.38 21.65 0.25 -58.27 16
22 Si 0.98 45.96 29.55 68.60 2.03 47.99 16
23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16
25 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16
26 C 0.13 4.91 8.41 86.48 0.73 5.64 16
27 C 0.04 1.15 5.58 86.38 0.48 1.63 16
28 C 0.13 2.81 6.61 86.35 0.57 3.38 16
29 H 0.06 1.27 6.38 -2.39 -0.02 1.26 16
30 H 0.09 1.19 8.05 -2.38 -0.02 1.17 16
31 H 0.04 0.54 8.13 -2.39 -0.02 0.52 16
32 H 0.11 1.09 8.09 -2.39 -0.02 1.07 16
33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
35 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16
36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16
37 H 0.11 2.29 7.35 -2.39 -0.02 2.27 16
38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
39 H 0.10 1.63 4.98 -2.39 -0.01 1.62 16
40 H 0.02 0.75 6.40 -2.39 -0.02 0.74 16
41 H 0.09 2.50 5.90 -2.38 -0.01 2.48 16
42 H 0.10 3.65 8.08 -2.39 -0.02 3.63 16
43 H 0.02 0.96 5.71 -2.39 -0.01 0.95 16
44 H 0.03 1.52 7.15 -2.39 -0.02 1.50 16
45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16
46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
47 H 0.06 1.93 6.04 -2.39 -0.01 1.92 16
48 H 0.02 0.51 8.14 -2.39 -0.02 0.50 16
49 H 0.10 2.32 8.07 -2.38 -0.02 2.31 16
50 H 0.09 2.09 7.04 -2.39 -0.02 2.08 16
51 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16
Total: -1.00 -73.31 383.05 -3.76 -77.07
By element:
Atomic # 1 Polarization: 15.77 SS G_CDS: 0.92 Total: 16.69 kcal
Atomic # 6 Polarization: 20.88 SS G_CDS: 8.05 Total: 28.93 kcal
Atomic # 7 Polarization: -129.57 SS G_CDS: -13.11 Total: -142.68 kcal
Atomic # 8 Polarization: -26.35 SS G_CDS: -1.66 Total: -28.00 kcal
Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal
Total: -73.31 -3.76 -77.07 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000941383560.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.391 kcal
(2) G-P(sol) polarization free energy of solvation -73.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.764 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.069 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.678 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds