Wall clock time and date at job start Tue Mar 31 2020 22:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46016 * 118.53283 * 2 1 4 4 C 1.52997 * 110.03627 * 161.81526 * 3 2 1 5 5 N 1.47196 * 108.71805 * 50.30558 * 4 3 2 6 6 C 1.46898 * 111.00010 * 167.61735 * 5 4 3 7 7 C 1.50702 * 109.46832 * 188.94026 * 6 5 4 8 8 O 1.21279 * 120.00201 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99793 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47092 * 34.99824 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99565 * 10 9 7 13 13 C 1.52996 * 109.47328 * 300.00366 * 12 10 9 14 14 C 1.53002 * 109.46891 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.46978 * 60.00410 * 14 13 12 16 16 H 1.09001 * 109.47375 * 59.99908 * 15 14 13 17 17 N 1.46504 * 109.47417 * 179.97438 * 15 14 13 18 18 C 1.36937 * 119.99777 * 275.00036 * 17 15 14 19 19 H 1.08003 * 119.99797 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00162 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00325 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99825 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47263 * 89.99889 * 22 20 18 24 24 H 1.48502 * 109.47263 * 209.99728 * 22 20 18 25 25 H 1.48499 * 109.47274 * 329.99944 * 22 20 18 26 26 C 1.52997 * 109.47007 * 154.99772 * 10 9 7 27 27 C 1.46899 * 110.17226 * 290.98620 * 5 4 3 28 28 C 1.33712 * 118.54054 * 179.97438 * 2 1 3 29 29 O 1.21290 * 118.62383 * 1.70839 * 28 2 1 30 30 H 1.09004 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47459 * 300.01976 * 1 2 3 32 32 H 1.09001 * 109.47346 * 60.02344 * 1 2 3 33 33 H 1.08997 * 109.37541 * 281.98740 * 3 2 1 34 34 H 1.08993 * 109.37552 * 41.76084 * 3 2 1 35 35 H 1.08997 * 109.61592 * 290.53344 * 4 3 2 36 36 H 1.09004 * 109.58612 * 170.06468 * 4 3 2 37 37 H 1.09002 * 109.47050 * 68.93879 * 6 5 4 38 38 H 1.09002 * 109.47292 * 308.93552 * 6 5 4 39 39 H 0.97004 * 119.99983 * 359.97438 * 9 7 6 40 40 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 41 41 H 1.09001 * 109.47194 * 179.97438 * 12 10 9 42 42 H 1.09004 * 109.47108 * 179.97438 * 13 12 10 43 43 H 1.08992 * 109.47554 * 59.99639 * 13 12 10 44 44 H 1.09001 * 109.47142 * 300.00176 * 14 13 12 45 45 H 1.09002 * 109.47097 * 180.02562 * 14 13 12 46 46 H 0.96997 * 120.00148 * 94.99044 * 17 15 14 47 47 H 0.97006 * 119.99769 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47533 * 179.97438 * 26 10 9 49 49 H 1.08996 * 109.47853 * 300.00060 * 26 10 9 50 50 H 1.09006 * 109.38419 * 170.44919 * 27 5 4 51 51 H 1.09000 * 109.38619 * 290.24018 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1624 1.2828 0.0000 4 6 3.6125 1.0911 0.4486 5 7 4.2094 -0.0014 -0.3369 6 6 5.6677 -0.0386 -0.1636 7 6 6.2650 -1.0169 -1.1419 8 8 5.5466 -1.6238 -1.9078 9 7 7.5974 -1.2182 -1.1651 10 6 8.1781 -2.1696 -2.1158 11 1 7.6120 -2.1441 -3.0470 12 6 8.1233 -3.5795 -1.5241 13 6 8.9177 -3.6154 -0.2171 14 6 10.3735 -3.2351 -0.4946 15 6 10.4284 -1.8252 -1.0862 16 1 9.9964 -1.1172 -0.3788 17 7 11.8223 -1.4607 -1.3513 18 6 12.5931 -0.9294 -0.3519 19 1 12.1731 -0.7787 0.6317 20 6 13.9140 -0.5845 -0.6029 21 7 14.6546 -0.0734 0.3575 22 14 14.6400 -0.8445 -2.3043 23 1 14.4258 0.3742 -3.1255 24 1 16.0959 -1.1118 -2.1857 25 1 13.9754 -2.0025 -2.9545 26 6 9.6338 -1.7893 -2.3933 27 6 3.6018 -1.2853 0.0378 28 6 2.1038 -1.1746 0.0005 29 8 1.4466 -2.1935 -0.0308 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 2.1475 1.7025 -1.0058 34 1 1.6613 1.9668 0.6848 35 1 3.6371 0.8353 1.5078 36 1 4.1721 2.0110 0.2792 37 1 5.9049 -0.3511 0.8534 38 1 6.0805 0.9539 -0.3444 39 1 8.1720 -0.7331 -0.5523 40 1 7.0861 -3.8505 -1.3265 41 1 8.5549 -4.2875 -2.2317 42 1 8.8782 -4.6198 0.2047 43 1 8.4858 -2.9075 0.4902 44 1 10.8055 -3.9430 -1.2019 45 1 10.9396 -3.2611 0.4365 46 1 12.1993 -1.5958 -2.2348 47 1 15.5779 0.1673 0.1821 48 1 10.0660 -2.4974 -3.1002 49 1 9.6730 -0.7848 -2.8147 50 1 3.9251 -2.0564 -0.6616 51 1 3.9182 -1.5550 1.0454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981182641.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:00 Heat of formation + Delta-G solvation = -43.890105 kcal Electronic energy + Delta-G solvation = -30269.525147 eV Core-core repulsion = 26204.263900 eV Total energy + Delta-G solvation = -4065.261247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92738 -40.07555 -38.34882 -37.19362 -35.51875 -34.61747 -33.14350 -31.42122 -30.78581 -30.12466 -29.27814 -28.37256 -26.68585 -25.05162 -23.56475 -23.08597 -22.18372 -21.07688 -20.85826 -19.07087 -18.95627 -17.78670 -17.66155 -17.05661 -16.87526 -16.38045 -15.70831 -15.62789 -15.27535 -14.90027 -14.72941 -14.59474 -14.41554 -13.93525 -13.77049 -13.70633 -13.42148 -13.00174 -12.86163 -12.81491 -12.71633 -12.53694 -12.34210 -12.26833 -11.99791 -11.91798 -11.85281 -11.65349 -11.31112 -11.01270 -10.96757 -10.48500 -10.30544 -10.16905 -10.12556 -9.79365 -9.75463 -9.63193 -9.09160 -9.01975 -8.92919 -8.84771 -7.33610 -5.83388 -3.19233 2.33540 2.58990 2.62881 2.88805 3.33084 3.36088 3.41554 3.52360 4.15621 4.27031 4.51457 4.53547 4.67407 4.72338 4.85646 4.92883 4.96874 4.98467 5.00622 5.04808 5.06074 5.09712 5.15969 5.36261 5.39902 5.43802 5.47347 5.54548 5.56944 5.57576 5.73208 5.83642 5.92357 5.97841 5.98798 6.09612 6.19139 6.25377 6.35523 6.37499 6.41149 6.58264 6.58927 6.80130 6.94561 7.05517 7.52878 7.84840 7.91722 8.22827 8.35579 9.13933 9.86805 10.06231 11.34729 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.002236 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.418618 B =12520.165806 C =13098.441139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.033 3.967 5 N -0.514 5.514 6 C 0.031 3.969 7 C 0.513 3.487 8 O -0.528 6.528 9 N -0.718 5.718 10 C 0.154 3.846 11 H 0.085 0.915 12 C -0.128 4.128 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.186 3.814 16 H 0.050 0.950 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.138 4.138 27 C 0.034 3.966 28 C 0.527 3.473 29 O -0.550 6.550 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.403 0.597 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.135 0.865 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.558 2.726 0.212 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.344 5.344 3 C -0.002 4.002 4 C -0.096 4.096 5 N -0.240 5.240 6 C -0.099 4.099 7 C 0.298 3.702 8 O -0.404 6.404 9 N -0.372 5.372 10 C 0.049 3.951 11 H 0.103 0.897 12 C -0.167 4.167 13 C -0.153 4.153 14 C -0.178 4.178 15 C 0.076 3.924 16 H 0.068 0.932 17 N -0.391 5.391 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.581 5.581 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.176 4.176 27 C -0.096 4.096 28 C 0.315 3.685 29 O -0.428 6.428 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.240 0.760 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.153 0.847 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.401 1.950 -0.647 25.484 hybrid contribution 1.306 0.080 0.039 1.309 sum -24.095 2.031 -0.608 24.188 Atomic orbital electron populations 1.21738 0.79442 1.04605 1.01232 1.47312 1.07366 1.06258 1.73436 1.21498 0.91371 0.84796 1.02546 1.22585 0.94956 0.96139 0.95889 1.62175 1.03084 1.03386 1.55316 1.22098 0.88317 1.01248 0.98278 1.20349 0.82460 0.82907 0.84484 1.90675 1.59931 1.48939 1.40889 1.46181 1.07002 1.44324 1.39654 1.20905 0.93819 0.88124 0.92223 0.89684 1.21907 1.00343 0.96303 0.98115 1.21489 0.96341 1.00735 0.96695 1.22256 0.94462 0.99203 1.01867 1.20119 0.85225 0.93618 0.93440 0.93195 1.42796 1.08344 1.76660 1.11295 1.19035 0.92743 1.33200 0.92389 0.89262 1.24678 0.96466 1.00917 0.97080 1.69698 1.08253 1.48634 1.31490 0.86556 0.78625 0.77939 0.85405 1.21102 1.21795 1.20322 1.22169 0.93293 1.02399 0.99767 1.22533 0.90121 0.94287 1.02622 1.20130 0.90314 0.82944 0.75107 1.90715 1.66776 1.34645 1.50621 0.89174 0.92246 0.92130 0.90581 0.90062 0.93309 0.88053 0.91165 0.86946 0.76044 0.91975 0.91209 0.92718 0.92535 0.92669 0.91613 0.80626 0.93042 0.90670 0.91103 0.84709 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.55 59.85 0.63 1.16 16 2 N -0.61 -5.53 3.23 -182.47 -0.59 -6.12 16 3 C 0.12 0.71 6.64 -4.30 -0.03 0.68 16 4 C 0.03 0.19 5.60 -3.66 -0.02 0.17 16 5 N -0.51 -4.62 4.47 -237.53 -1.06 -5.68 16 6 C 0.03 0.25 5.44 -4.98 -0.03 0.22 16 7 C 0.51 5.84 7.55 -10.98 -0.08 5.76 16 8 O -0.53 -7.91 13.97 5.56 0.08 -7.83 16 9 N -0.72 -7.90 4.23 -53.81 -0.23 -8.13 16 10 C 0.15 1.90 2.78 -67.93 -0.19 1.71 16 11 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 12 C -0.13 -1.56 5.60 -26.73 -0.15 -1.71 16 13 C -0.11 -1.46 5.77 -26.73 -0.15 -1.62 16 14 C -0.14 -2.18 5.50 -26.73 -0.15 -2.33 16 15 C 0.19 3.12 2.60 -67.93 -0.18 2.94 16 16 H 0.05 0.83 6.44 -51.93 -0.33 0.50 16 17 N -0.75 -16.36 4.93 -53.42 -0.26 -16.63 16 18 C -0.24 -6.47 10.41 -15.06 -0.16 -6.63 16 19 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 22 Si 0.88 21.42 27.74 -169.99 -4.71 16.70 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 26 C -0.14 -1.90 5.08 -26.73 -0.14 -2.04 16 27 C 0.03 0.37 5.14 -5.19 -0.03 0.35 16 28 C 0.53 6.41 7.57 -11.68 -0.09 6.32 16 29 O -0.55 -8.65 16.07 5.55 0.09 -8.56 16 30 H 0.09 0.84 6.67 -51.93 -0.35 0.50 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.28 8.12 -51.93 -0.42 -0.15 16 35 H 0.05 0.26 8.08 -51.93 -0.42 -0.16 16 36 H 0.10 0.38 7.91 -51.93 -0.41 -0.03 16 37 H 0.07 0.45 8.05 -51.93 -0.42 0.04 16 38 H 0.11 0.68 7.93 -51.93 -0.41 0.27 16 39 H 0.40 4.09 6.87 -40.82 -0.28 3.81 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.36 7.88 5.66 -40.82 -0.23 7.65 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 50 H 0.14 1.82 6.00 -51.93 -0.31 1.51 16 51 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 LS Contribution 393.83 15.07 5.94 5.94 Total: -1.00 -34.91 393.83 -9.44 -44.35 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.61 Total: 8.54 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.85 Total: 5.01 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -1.37 Total: -64.14 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.17 Total: -16.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.91 -9.44 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981182641.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.455 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds