Wall clock time and date at job start Tue Mar 31 2020 22:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46016 * 118.53283 * 2 1 4 4 C 1.52997 * 110.03627 * 161.81526 * 3 2 1 5 5 N 1.47196 * 108.71805 * 50.30558 * 4 3 2 6 6 C 1.46898 * 111.00010 * 167.61735 * 5 4 3 7 7 C 1.50702 * 109.46832 * 188.94026 * 6 5 4 8 8 O 1.21279 * 120.00201 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99793 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47092 * 34.99824 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99565 * 10 9 7 13 13 C 1.52996 * 109.47328 * 300.00366 * 12 10 9 14 14 C 1.53002 * 109.46891 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.46978 * 60.00410 * 14 13 12 16 16 H 1.09001 * 109.47375 * 59.99908 * 15 14 13 17 17 N 1.46504 * 109.47417 * 179.97438 * 15 14 13 18 18 C 1.36937 * 119.99777 * 275.00036 * 17 15 14 19 19 H 1.08003 * 119.99797 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00162 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00325 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99825 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47263 * 89.99889 * 22 20 18 24 24 H 1.48502 * 109.47263 * 209.99728 * 22 20 18 25 25 H 1.48499 * 109.47274 * 329.99944 * 22 20 18 26 26 C 1.52997 * 109.47007 * 154.99772 * 10 9 7 27 27 C 1.46899 * 110.17226 * 290.98620 * 5 4 3 28 28 C 1.33712 * 118.54054 * 179.97438 * 2 1 3 29 29 O 1.21290 * 118.62383 * 1.70839 * 28 2 1 30 30 H 1.09004 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47459 * 300.01976 * 1 2 3 32 32 H 1.09001 * 109.47346 * 60.02344 * 1 2 3 33 33 H 1.08997 * 109.37541 * 281.98740 * 3 2 1 34 34 H 1.08993 * 109.37552 * 41.76084 * 3 2 1 35 35 H 1.08997 * 109.61592 * 290.53344 * 4 3 2 36 36 H 1.09004 * 109.58612 * 170.06468 * 4 3 2 37 37 H 1.09002 * 109.47050 * 68.93879 * 6 5 4 38 38 H 1.09002 * 109.47292 * 308.93552 * 6 5 4 39 39 H 0.97004 * 119.99983 * 359.97438 * 9 7 6 40 40 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 41 41 H 1.09001 * 109.47194 * 179.97438 * 12 10 9 42 42 H 1.09004 * 109.47108 * 179.97438 * 13 12 10 43 43 H 1.08992 * 109.47554 * 59.99639 * 13 12 10 44 44 H 1.09001 * 109.47142 * 300.00176 * 14 13 12 45 45 H 1.09002 * 109.47097 * 180.02562 * 14 13 12 46 46 H 0.96997 * 120.00148 * 94.99044 * 17 15 14 47 47 H 0.97006 * 119.99769 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47533 * 179.97438 * 26 10 9 49 49 H 1.08996 * 109.47853 * 300.00060 * 26 10 9 50 50 H 1.09006 * 109.38419 * 170.44919 * 27 5 4 51 51 H 1.09000 * 109.38619 * 290.24018 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1624 1.2828 0.0000 4 6 3.6125 1.0911 0.4486 5 7 4.2094 -0.0014 -0.3369 6 6 5.6677 -0.0386 -0.1636 7 6 6.2650 -1.0169 -1.1419 8 8 5.5466 -1.6238 -1.9078 9 7 7.5974 -1.2182 -1.1651 10 6 8.1781 -2.1696 -2.1158 11 1 7.6120 -2.1441 -3.0470 12 6 8.1233 -3.5795 -1.5241 13 6 8.9177 -3.6154 -0.2171 14 6 10.3735 -3.2351 -0.4946 15 6 10.4284 -1.8252 -1.0862 16 1 9.9964 -1.1172 -0.3788 17 7 11.8223 -1.4607 -1.3513 18 6 12.5931 -0.9294 -0.3519 19 1 12.1731 -0.7787 0.6317 20 6 13.9140 -0.5845 -0.6029 21 7 14.6546 -0.0734 0.3575 22 14 14.6400 -0.8445 -2.3043 23 1 14.4258 0.3742 -3.1255 24 1 16.0959 -1.1118 -2.1857 25 1 13.9754 -2.0025 -2.9545 26 6 9.6338 -1.7893 -2.3933 27 6 3.6018 -1.2853 0.0378 28 6 2.1038 -1.1746 0.0005 29 8 1.4466 -2.1935 -0.0308 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 2.1475 1.7025 -1.0058 34 1 1.6613 1.9668 0.6848 35 1 3.6371 0.8353 1.5078 36 1 4.1721 2.0110 0.2792 37 1 5.9049 -0.3511 0.8534 38 1 6.0805 0.9539 -0.3444 39 1 8.1720 -0.7331 -0.5523 40 1 7.0861 -3.8505 -1.3265 41 1 8.5549 -4.2875 -2.2317 42 1 8.8782 -4.6198 0.2047 43 1 8.4858 -2.9075 0.4902 44 1 10.8055 -3.9430 -1.2019 45 1 10.9396 -3.2611 0.4365 46 1 12.1993 -1.5958 -2.2348 47 1 15.5779 0.1673 0.1821 48 1 10.0660 -2.4974 -3.1002 49 1 9.6730 -0.7848 -2.8147 50 1 3.9251 -2.0564 -0.6616 51 1 3.9182 -1.5550 1.0454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981182641.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:59 Heat of formation + Delta-G solvation = -70.652217 kcal Electronic energy + Delta-G solvation = -30270.685639 eV Core-core repulsion = 26204.263900 eV Total energy + Delta-G solvation = -4066.421739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71773 -41.04636 -39.42270 -38.04674 -36.37456 -36.05029 -34.40547 -33.22005 -31.55874 -30.91944 -30.30651 -29.72506 -27.36563 -25.73018 -25.33657 -23.81285 -23.27438 -22.44241 -21.82476 -20.29386 -19.69023 -19.44989 -18.56570 -17.81870 -17.67633 -17.11911 -16.81989 -16.67117 -16.39085 -16.15530 -15.66122 -15.56669 -15.35335 -15.21944 -14.91909 -14.67758 -14.56246 -14.23395 -14.17259 -13.77811 -13.53874 -13.44401 -13.21311 -13.05451 -13.02132 -12.96769 -12.87489 -12.83418 -12.54529 -12.34846 -12.29280 -11.99084 -11.79350 -11.58746 -11.50201 -11.08028 -11.01052 -10.86273 -10.69130 -9.95185 -9.77434 -9.49269 -9.26086 -7.98260 -5.30531 1.41103 1.43055 1.45203 1.50348 1.73378 1.96920 2.13004 2.51752 2.80341 3.33268 3.47388 3.50047 3.79899 3.82160 3.88761 3.94425 4.05336 4.20631 4.25122 4.29809 4.30606 4.36036 4.40650 4.44434 4.54841 4.55961 4.62851 4.65249 4.68231 4.72701 4.75371 4.82222 4.92344 4.96804 4.99624 5.11682 5.18182 5.23085 5.34325 5.38838 5.51478 5.55271 5.60459 5.69145 5.82945 5.84268 6.26044 6.31833 6.65846 7.01821 7.12770 7.36273 7.90057 8.07390 9.22988 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.002236 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.418618 B =12520.165806 C =13098.441139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.115 3.885 4 C 0.032 3.968 5 N -0.528 5.528 6 C 0.036 3.964 7 C 0.510 3.490 8 O -0.567 6.567 9 N -0.714 5.714 10 C 0.161 3.839 11 H 0.081 0.919 12 C -0.122 4.122 13 C -0.104 4.104 14 C -0.130 4.130 15 C 0.180 3.820 16 H 0.052 0.948 17 N -0.753 5.753 18 C -0.220 4.220 19 H 0.061 0.939 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.950 3.050 23 H -0.279 1.279 24 H -0.302 1.302 25 H -0.253 1.253 26 C -0.125 4.125 27 C 0.043 3.957 28 C 0.516 3.484 29 O -0.601 6.601 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.409 0.591 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.038 0.962 46 H 0.364 0.636 47 H 0.255 0.745 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.103 0.897 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.800 3.992 -0.427 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C -0.007 4.007 4 C -0.096 4.096 5 N -0.255 5.255 6 C -0.094 4.094 7 C 0.297 3.703 8 O -0.446 6.446 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.099 0.901 12 C -0.160 4.160 13 C -0.142 4.142 14 C -0.170 4.170 15 C 0.072 3.928 16 H 0.070 0.930 17 N -0.395 5.395 18 C -0.351 4.351 19 H 0.079 0.921 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.779 3.221 23 H -0.206 1.206 24 H -0.230 1.230 25 H -0.178 1.178 26 C -0.163 4.163 27 C -0.088 4.088 28 C 0.305 3.695 29 O -0.483 6.483 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.158 0.842 39 H 0.246 0.754 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.197 0.803 47 H 0.064 0.936 48 H 0.100 0.900 49 H 0.090 0.910 50 H 0.121 0.879 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.695 3.249 -1.294 26.923 hybrid contribution 1.578 -0.274 0.297 1.629 sum -25.117 2.975 -0.997 25.312 Atomic orbital electron populations 1.21860 0.78606 1.03534 1.03314 1.47502 1.08226 1.06566 1.71521 1.21816 0.91648 0.83529 1.03726 1.22755 0.94899 0.95971 0.95931 1.62130 1.03614 1.03128 1.56593 1.22165 0.87697 1.01505 0.98073 1.20987 0.82059 0.82808 0.84412 1.90674 1.60700 1.50536 1.42661 1.46143 1.07225 1.44031 1.39374 1.20745 0.92663 0.88495 0.92546 0.90086 1.21848 0.99952 0.96426 0.97803 1.21387 0.94118 1.01402 0.97292 1.22106 0.96220 0.98431 1.00273 1.20366 0.83031 0.94002 0.95378 0.92965 1.42849 1.09933 1.76423 1.10307 1.19012 0.92843 1.31009 0.92200 0.92069 1.25451 0.97272 1.02052 1.01029 1.69875 1.08453 1.51268 1.33950 0.85475 0.77065 0.78733 0.80867 1.20559 1.22974 1.17764 1.22022 0.93590 1.02801 0.97922 1.22279 0.89460 0.94815 1.02240 1.20429 0.90868 0.83277 0.74933 1.90681 1.67786 1.36502 1.53289 0.91836 0.89528 0.90562 0.90336 0.86740 0.92372 0.85271 0.89102 0.84244 0.75374 0.92321 0.90497 0.91809 0.91903 0.92861 0.94336 0.80335 0.93598 0.90022 0.90981 0.87868 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 10.55 127.77 1.35 2.27 16 2 N -0.61 -10.12 3.23 -850.19 -2.74 -12.86 16 3 C 0.11 0.97 6.64 86.47 0.57 1.54 16 4 C 0.03 0.25 5.60 86.25 0.48 0.74 16 5 N -0.53 -8.36 4.47 -905.42 -4.05 -12.41 16 6 C 0.04 0.47 5.44 85.56 0.47 0.94 16 7 C 0.51 10.79 7.55 87.66 0.66 11.45 16 8 O -0.57 -16.72 13.97 -3.03 -0.04 -16.77 16 9 N -0.71 -14.32 4.23 -442.53 -1.87 -16.19 16 10 C 0.16 3.66 2.78 44.99 0.13 3.78 16 11 H 0.08 1.99 7.58 -2.39 -0.02 1.98 16 12 C -0.12 -2.75 5.60 30.59 0.17 -2.58 16 13 C -0.10 -2.47 5.77 30.59 0.18 -2.30 16 14 C -0.13 -3.98 5.50 30.59 0.17 -3.81 16 15 C 0.18 5.77 2.60 44.99 0.12 5.89 16 16 H 0.05 1.67 6.44 -2.39 -0.02 1.65 16 17 N -0.75 -31.92 4.93 -322.93 -1.59 -33.51 16 18 C -0.22 -11.67 10.41 84.03 0.87 -10.79 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 20 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 21 N -0.98 -61.22 13.97 21.65 0.30 -60.91 16 22 Si 0.95 44.03 27.74 68.60 1.90 45.93 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 25 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 26 C -0.12 -3.17 5.08 30.60 0.16 -3.01 16 27 C 0.04 0.91 5.14 85.42 0.44 1.34 16 28 C 0.52 12.61 7.57 87.68 0.66 13.28 16 29 O -0.60 -19.85 16.07 -3.06 -0.05 -19.90 16 30 H 0.06 1.22 6.67 -2.38 -0.02 1.21 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.26 8.12 -2.39 -0.02 0.24 16 35 H 0.06 0.40 8.08 -2.39 -0.02 0.38 16 36 H 0.13 0.35 7.91 -2.38 -0.02 0.34 16 37 H 0.09 0.87 8.05 -2.39 -0.02 0.85 16 38 H 0.14 1.12 7.93 -2.39 -0.02 1.10 16 39 H 0.41 7.35 6.87 -92.71 -0.64 6.71 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.06 1.43 7.60 -2.39 -0.02 1.41 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.36 15.05 5.66 -92.71 -0.52 14.52 16 47 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.10 2.89 6.00 -2.38 -0.01 2.88 16 51 H 0.08 1.42 8.05 -2.39 -0.02 1.40 16 Total: -1.00 -79.25 393.83 -1.53 -80.78 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.28 Total: 30.39 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 6.89 Total: 15.44 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -9.95 Total: -135.87 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.09 Total: -36.67 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Total: -79.25 -1.53 -80.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981182641.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.132 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds