Wall clock time and date at job start Tue Mar 31 2020 22:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46007 * 118.53670 * 2 1 4 4 C 1.52982 * 109.94758 * 161.76428 * 3 2 1 5 5 N 1.47184 * 108.73286 * 50.34735 * 4 3 2 6 6 C 1.46895 * 111.00155 * 167.63697 * 5 4 3 7 7 C 1.50699 * 109.47381 * 190.00608 * 6 5 4 8 8 O 1.21288 * 120.00015 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00562 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00535 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.46460 * 324.99631 * 10 9 7 12 12 C 1.52995 * 109.47340 * 84.99498 * 10 9 7 13 13 C 1.53006 * 109.47217 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46775 * 299.99959 * 13 12 10 15 15 C 1.52997 * 109.46928 * 60.00281 * 14 13 12 16 16 H 1.08998 * 109.47637 * 59.99574 * 15 14 13 17 17 N 1.46509 * 109.46946 * 179.97438 * 15 14 13 18 18 C 1.36936 * 119.99768 * 274.99783 * 17 15 14 19 19 H 1.07992 * 120.00137 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99476 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00485 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99789 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47235 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47221 * 120.00010 * 22 20 18 25 25 H 1.48497 * 109.47402 * 240.00296 * 22 20 18 26 26 C 1.52995 * 109.47093 * 204.99931 * 10 9 7 27 27 C 1.46899 * 110.17865 * 291.00714 * 5 4 3 28 28 C 1.33566 * 118.41738 * 180.10050 * 2 1 3 29 29 O 1.21275 * 118.67423 * 1.68593 * 28 2 1 30 30 H 1.08999 * 109.47439 * 90.00133 * 1 2 3 31 31 H 1.08997 * 109.46948 * 210.00126 * 1 2 3 32 32 H 1.09001 * 109.46658 * 329.99259 * 1 2 3 33 33 H 1.09002 * 109.37594 * 41.64502 * 3 2 1 34 34 H 1.08999 * 109.37333 * 281.87891 * 3 2 1 35 35 H 1.08994 * 109.59401 * 170.12724 * 4 3 2 36 36 H 1.09003 * 109.59130 * 290.42451 * 4 3 2 37 37 H 1.09007 * 109.47301 * 310.00332 * 6 5 4 38 38 H 1.09000 * 109.47315 * 70.00164 * 6 5 4 39 39 H 0.96997 * 119.99644 * 359.97438 * 9 7 6 40 40 H 1.09007 * 109.47328 * 300.00187 * 12 10 9 41 41 H 1.08998 * 109.47296 * 60.00407 * 12 10 9 42 42 H 1.08998 * 109.46920 * 59.99853 * 13 12 10 43 43 H 1.08999 * 109.47021 * 180.02562 * 13 12 10 44 44 H 1.09002 * 109.46626 * 179.97438 * 14 13 12 45 45 H 1.08998 * 109.47309 * 299.99655 * 14 13 12 46 46 H 0.96998 * 119.99622 * 95.00237 * 17 15 14 47 47 H 0.96992 * 120.00488 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47029 * 299.99278 * 26 10 9 49 49 H 1.08999 * 109.47470 * 59.99777 * 26 10 9 50 50 H 1.08993 * 109.39187 * 170.45114 * 27 5 4 51 51 H 1.09001 * 109.38411 * 290.24635 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6117 1.0887 0.4500 5 7 4.2083 -0.0039 -0.3353 6 6 5.6662 -0.0431 -0.1598 7 6 6.2665 -1.0019 -1.1555 8 8 5.5502 -1.5946 -1.9344 9 7 7.5991 -1.2017 -1.1800 10 6 8.1826 -2.1341 -2.1476 11 1 7.5008 -2.9704 -2.3026 12 6 8.4142 -1.4118 -3.4762 13 6 9.0229 -2.3859 -4.4870 14 6 10.3573 -2.9088 -3.9513 15 6 10.1256 -3.6312 -2.6226 16 1 9.4436 -4.4672 -2.7776 17 7 11.4033 -4.1324 -2.1100 18 6 11.8835 -5.3428 -2.5337 19 1 11.3203 -5.9280 -3.2454 20 6 13.0944 -5.8173 -2.0483 21 7 13.7806 -5.1043 -1.1806 22 14 13.7492 -7.4687 -2.6257 23 1 12.7962 -8.0680 -3.5943 24 1 15.0669 -7.2764 -3.2830 25 1 13.9054 -8.3746 -1.4594 26 6 9.5169 -2.6566 -1.6116 27 6 3.5985 -1.2873 0.0373 28 6 2.1007 -1.1747 -0.0021 29 8 1.4422 -2.1926 -0.0352 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 1.6602 1.9675 0.6833 34 1 2.1493 1.7014 -1.0062 35 1 4.1727 2.0080 0.2823 36 1 3.6345 0.8348 1.5098 37 1 6.0786 0.9530 -0.3207 38 1 5.9017 -0.3748 0.8514 39 1 8.1720 -0.7279 -0.5568 40 1 7.4635 -1.0396 -3.8581 41 1 9.0959 -0.5756 -3.3211 42 1 8.3409 -3.2219 -4.6420 43 1 9.1884 -1.8712 -5.4334 44 1 10.7908 -3.6031 -4.6712 45 1 11.0393 -2.0728 -3.7963 46 1 11.9089 -3.6069 -1.4704 47 1 14.6264 -5.4361 -0.8412 48 1 10.1986 -1.8203 -1.4565 49 1 9.3519 -3.1712 -0.6650 50 1 3.9218 -2.0582 -0.6620 51 1 3.9130 -1.5582 1.0452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981182642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:04 Heat of formation + Delta-G solvation = -50.654318 kcal Electronic energy + Delta-G solvation = -29715.448067 eV Core-core repulsion = 25649.893502 eV Total energy + Delta-G solvation = -4065.554565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94247 -39.92946 -38.21015 -37.23158 -35.57646 -34.65030 -33.36034 -31.15294 -30.80263 -30.08452 -29.06094 -27.82144 -26.64472 -25.09031 -23.75812 -23.15185 -21.98934 -21.30692 -20.34253 -19.40590 -19.04972 -17.75561 -17.24875 -17.04073 -16.75257 -16.43608 -16.10787 -15.53047 -15.05394 -14.88828 -14.77746 -14.39865 -14.24056 -13.84916 -13.78701 -13.56396 -13.41322 -13.17835 -13.03474 -12.82358 -12.72676 -12.62504 -12.36965 -12.16075 -12.11460 -11.90074 -11.70580 -11.00075 -10.93654 -10.89059 -10.72742 -10.34990 -10.28778 -10.20550 -10.14705 -10.00454 -9.70487 -9.57853 -9.12395 -9.03093 -8.88959 -8.85654 -6.96952 -5.77970 -3.06399 2.33262 2.55251 2.59687 2.83190 3.42902 3.45974 3.49530 3.51099 4.12627 4.21538 4.45051 4.57530 4.60861 4.67342 4.83306 4.89074 4.90581 4.96422 4.99191 5.04008 5.10727 5.14854 5.32632 5.33452 5.42977 5.49880 5.51780 5.60332 5.68710 5.74268 5.87217 5.95509 5.97220 6.02340 6.14448 6.19483 6.29942 6.32118 6.36600 6.52238 6.54089 6.62609 6.72671 6.96586 7.03913 7.11991 7.48042 7.71093 7.84053 8.19672 8.40865 9.52216 10.09328 10.44061 11.44833 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.001947 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.405544 B =14378.995817 C =14700.343478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.033 3.967 5 N -0.514 5.514 6 C 0.033 3.967 7 C 0.511 3.489 8 O -0.522 6.522 9 N -0.724 5.724 10 C 0.150 3.850 11 H 0.087 0.913 12 C -0.123 4.123 13 C -0.115 4.115 14 C -0.136 4.136 15 C 0.183 3.817 16 H 0.048 0.952 17 N -0.724 5.724 18 C -0.236 4.236 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.129 4.129 27 C 0.034 3.966 28 C 0.526 3.474 29 O -0.547 6.547 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.134 0.866 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.690 19.770 5.018 29.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C -0.002 4.002 4 C -0.095 4.095 5 N -0.240 5.240 6 C -0.098 4.098 7 C 0.295 3.705 8 O -0.397 6.397 9 N -0.375 5.375 10 C 0.046 3.954 11 H 0.105 0.895 12 C -0.161 4.161 13 C -0.154 4.154 14 C -0.177 4.177 15 C 0.072 3.928 16 H 0.066 0.934 17 N -0.365 5.365 18 C -0.367 4.367 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.168 4.168 27 C -0.096 4.096 28 C 0.314 3.686 29 O -0.424 6.424 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.152 0.848 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.622 18.688 3.869 29.597 hybrid contribution 1.235 -0.401 1.053 1.672 sum -21.387 18.287 4.922 28.567 Atomic orbital electron populations 1.21692 0.79318 1.03075 1.02215 1.47313 1.07380 1.06236 1.73480 1.21529 0.91374 0.84804 1.02530 1.22565 0.95042 0.96030 0.95876 1.62157 1.02992 1.03484 1.55334 1.22083 0.88462 1.01151 0.98085 1.20366 0.82426 0.82854 0.84818 1.90709 1.60065 1.48356 1.40597 1.46144 1.06993 1.46135 1.38255 1.21024 0.95107 0.91577 0.87726 0.89462 1.21868 1.00539 0.98619 0.95106 1.21489 0.97924 0.98488 0.97471 1.22287 0.95363 1.00250 0.99791 1.20116 0.88866 0.93330 0.90456 0.93356 1.42407 1.20112 1.21597 1.52351 1.19298 1.02067 0.95182 1.20146 0.91070 1.24737 0.97754 0.98802 0.99787 1.69663 1.15815 1.38306 1.34477 0.86133 0.78638 0.83741 0.77800 1.20517 1.21919 1.21910 1.22092 0.94471 0.99988 1.00199 1.22533 0.90257 0.94122 1.02646 1.20050 0.90255 0.82888 0.75445 1.90736 1.66742 1.34701 1.50210 0.92522 0.90348 0.91254 0.90039 0.90598 0.88204 0.93344 0.87163 0.91259 0.76794 0.92137 0.92139 0.92173 0.92534 0.91913 0.92688 0.78366 0.93615 0.91736 0.91378 0.84784 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.29 59.85 0.62 1.18 16 2 N -0.61 -5.36 3.22 -182.52 -0.59 -5.94 16 3 C 0.12 0.63 6.63 -4.32 -0.03 0.60 16 4 C 0.03 0.16 5.59 -3.68 -0.02 0.14 16 5 N -0.51 -4.34 4.45 -237.56 -1.06 -5.39 16 6 C 0.03 0.23 5.44 -4.98 -0.03 0.21 16 7 C 0.51 5.65 7.56 -10.99 -0.08 5.57 16 8 O -0.52 -8.04 14.05 5.55 0.08 -7.96 16 9 N -0.72 -7.46 5.08 -53.81 -0.27 -7.74 16 10 C 0.15 1.99 2.45 -67.94 -0.17 1.82 16 11 H 0.09 1.35 7.58 -51.92 -0.39 0.95 16 12 C -0.12 -1.60 5.49 -26.73 -0.15 -1.75 16 13 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 14 C -0.14 -2.37 5.50 -26.73 -0.15 -2.52 16 15 C 0.18 3.49 2.77 -67.90 -0.19 3.30 16 16 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 17 N -0.72 -17.63 5.12 -53.40 -0.27 -17.90 16 18 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 20 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 C -0.13 -1.95 4.86 -26.71 -0.13 -2.08 16 27 C 0.03 0.37 5.16 -5.19 -0.03 0.34 16 28 C 0.53 6.37 7.56 -11.74 -0.09 6.28 16 29 O -0.55 -8.73 16.32 5.56 0.09 -8.64 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.68 7.26 -51.93 -0.38 0.30 16 32 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 33 H 0.08 0.21 7.98 -51.93 -0.41 -0.20 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.27 7.90 -51.93 -0.41 -0.14 16 36 H 0.05 0.22 8.08 -51.93 -0.42 -0.20 16 37 H 0.11 0.49 7.91 -51.92 -0.41 0.08 16 38 H 0.07 0.37 8.03 -51.93 -0.42 -0.05 16 39 H 0.40 3.01 8.60 -40.82 -0.35 2.66 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.13 1.84 6.09 -51.93 -0.32 1.52 16 51 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -35.68 401.66 -9.96 -45.64 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -8.85 Total: 7.51 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.84 Total: 4.17 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -1.47 Total: -64.11 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.17 Total: -16.60 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.68 -9.96 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981182642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.011 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds