Wall clock time and date at job start Tue Mar 31 2020 22:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36929 * 119.99939 * 2 1 4 4 H 1.08004 * 119.99859 * 202.99309 * 3 2 1 5 5 C 1.38819 * 120.00406 * 22.99448 * 3 2 1 6 6 N 1.31614 * 119.99382 * 11.63273 * 5 3 2 7 7 Si 1.86794 * 120.00160 * 191.63760 * 5 3 2 8 8 H 1.48507 * 109.47187 * 59.99855 * 7 5 3 9 9 H 1.48500 * 109.47159 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47316 * 300.00201 * 7 5 3 11 11 C 1.46496 * 119.99715 * 179.97438 * 2 1 3 12 12 C 1.53034 * 109.46714 * 300.00263 * 11 2 1 13 13 C 1.53188 * 109.31860 * 181.38581 * 12 11 2 14 14 N 1.46932 * 108.77379 * 305.36529 * 13 12 11 15 15 C 1.34773 * 120.63024 * 233.58406 * 14 13 12 16 16 O 1.21284 * 120.00103 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00117 * 179.72531 * 15 14 13 18 18 N 1.46897 * 109.47294 * 180.02562 * 17 15 14 19 19 C 1.47198 * 111.00156 * 169.99937 * 18 17 15 20 20 C 1.52982 * 108.72579 * 54.36564 * 19 18 17 21 21 N 1.46011 * 110.04524 * 50.29790 * 20 19 18 22 22 C 1.46497 * 118.53725 * 161.81357 * 21 20 19 23 23 C 1.33715 * 122.92270 * 341.82913 * 21 20 19 24 24 O 1.21287 * 118.62405 * 181.68669 * 23 21 20 25 25 C 1.46904 * 110.99892 * 292.88852 * 18 17 15 26 26 C 1.46924 * 118.73654 * 53.86043 * 14 13 12 27 27 C 1.53045 * 109.45792 * 60.07346 * 11 2 1 28 28 H 1.09005 * 109.46757 * 273.84771 * 1 2 3 29 29 H 1.08997 * 109.46688 * 33.84446 * 1 2 3 30 30 H 1.08994 * 109.47218 * 153.85012 * 1 2 3 31 31 H 0.97006 * 119.99566 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.45001 * 180.02562 * 11 2 1 33 33 H 1.09008 * 109.49565 * 61.43014 * 12 11 2 34 34 H 1.09001 * 109.52294 * 301.35624 * 12 11 2 35 35 H 1.09000 * 109.58808 * 185.57884 * 13 12 11 36 36 H 1.09000 * 109.70237 * 65.22027 * 13 12 11 37 37 H 1.08999 * 109.47006 * 300.00170 * 17 15 14 38 38 H 1.08998 * 109.47236 * 59.99638 * 17 15 14 39 39 H 1.08993 * 109.59443 * 174.13847 * 19 18 17 40 40 H 1.09000 * 109.59234 * 294.44659 * 19 18 17 41 41 H 1.09000 * 109.37082 * 170.46759 * 20 19 18 42 42 H 1.08996 * 109.37602 * 290.11510 * 20 19 18 43 43 H 1.08997 * 109.46915 * 90.00105 * 22 21 20 44 44 H 1.09002 * 109.46743 * 209.99381 * 22 21 20 45 45 H 1.08999 * 109.47322 * 329.99560 * 22 21 20 46 46 H 1.08996 * 109.38452 * 47.08855 * 25 18 17 47 47 H 1.08997 * 109.38343 * 166.77758 * 25 18 17 48 48 H 1.08992 * 109.58981 * 65.92468 * 26 14 13 49 49 H 1.09000 * 109.58326 * 186.35701 * 26 14 13 50 50 H 1.08998 * 109.49730 * 298.56100 * 27 11 2 51 51 H 1.08993 * 109.49955 * 58.65981 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1654 1.2230 -0.3654 5 6 1.5384 2.3403 0.4696 6 7 0.3979 2.2623 1.1219 7 14 2.3344 4.0045 0.1757 8 1 2.4684 4.2381 -1.2847 9 1 1.4886 5.0698 0.7714 10 1 3.6787 4.0285 0.8061 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0706 1.2504 13 6 2.6212 -3.3808 1.2652 14 7 2.3849 -4.0910 0.0008 15 6 1.9587 -5.3696 0.0007 16 8 1.7670 -5.9451 1.0510 17 6 1.7149 -6.0825 -1.3044 18 7 1.2588 -7.4528 -1.0361 19 6 0.7850 -8.1021 -2.2693 20 6 1.8907 -8.0204 -3.3233 21 7 3.1534 -8.4917 -2.7616 22 6 4.2273 -8.8778 -3.6802 23 6 3.3730 -8.5868 -1.4460 24 8 4.4625 -8.9589 -1.0643 25 6 2.3268 -8.2522 -0.4209 26 6 2.6279 -3.3828 -1.2633 27 6 1.8289 -2.0707 -1.2497 28 1 -0.3633 0.0690 1.0254 29 1 -0.3632 0.8535 -0.5723 30 1 -0.3633 -0.9224 -0.4529 31 1 -0.0294 3.0690 1.4497 32 1 3.2691 -1.0692 0.0009 33 1 0.7603 -2.2917 1.2381 34 1 2.0684 -1.4894 2.1406 35 1 2.2898 -3.9994 2.0992 36 1 3.6845 -3.1653 1.3700 37 1 0.9515 -5.5504 -1.8719 38 1 2.6401 -6.1132 -1.8799 39 1 0.5506 -9.1468 -2.0655 40 1 -0.1071 -7.5912 -2.6318 41 1 1.6216 -8.6405 -4.1784 42 1 2.0035 -6.9867 -3.6498 43 1 4.8489 -8.0094 -3.8979 44 1 4.8372 -9.6550 -3.2198 45 1 3.7946 -9.2563 -4.6063 46 1 2.7830 -7.6838 0.3895 47 1 1.9041 -9.1739 -0.0211 48 1 3.6914 -3.1652 -1.3617 49 1 2.3009 -4.0027 -2.0981 50 1 0.7617 -2.2920 -1.2385 51 1 2.0711 -1.4895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985505241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:32 Heat of formation + Delta-G solvation = -14.277179 kcal Electronic energy + Delta-G solvation = -31014.332474 eV Core-core repulsion = 26950.355340 eV Total energy + Delta-G solvation = -4063.977134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.31872 -39.89382 -37.91690 -37.18432 -35.35496 -35.02515 -32.29776 -31.13052 -30.37689 -29.92209 -29.14695 -27.29448 -26.01257 -25.19615 -24.70733 -23.20838 -22.66295 -21.94300 -20.11736 -19.02379 -18.30732 -17.62288 -17.13336 -16.82297 -16.71171 -16.43931 -15.79329 -15.61556 -15.14245 -14.94276 -14.84500 -14.13581 -13.96232 -13.71951 -13.64879 -13.47049 -13.28998 -13.25856 -13.05007 -12.89278 -12.52019 -12.40622 -12.36214 -11.96192 -11.79330 -11.72623 -11.67890 -11.45079 -10.96000 -10.87244 -10.78502 -10.70685 -10.40651 -10.26795 -10.14933 -9.86569 -9.72142 -9.58816 -9.20287 -8.67794 -8.56884 -8.45864 -6.76139 -5.73141 -3.19702 2.25319 2.46961 2.65264 2.91114 3.37160 3.42818 3.43325 3.53429 4.02563 4.33231 4.41127 4.41827 4.47240 4.69351 4.82100 4.90346 4.93041 5.02896 5.03977 5.14020 5.16725 5.20708 5.31717 5.35705 5.39215 5.42559 5.49220 5.52684 5.57718 5.76188 5.87548 5.88472 5.99535 6.13896 6.23552 6.28306 6.35266 6.40933 6.52596 6.61525 6.78298 6.96245 6.96719 7.00172 7.38422 7.50060 7.72933 7.75569 7.79600 8.23803 8.39392 9.23076 9.86424 10.35928 11.31594 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.002397 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.145194 B =11677.844346 C =11868.801023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.115 3.885 14 N -0.605 5.605 15 C 0.515 3.485 16 O -0.530 6.530 17 C 0.029 3.971 18 N -0.506 5.506 19 C 0.037 3.963 20 C 0.073 3.927 21 N -0.614 5.614 22 C 0.079 3.921 23 C 0.482 3.518 24 O -0.546 6.546 25 C 0.039 3.961 26 C 0.110 3.890 27 C -0.147 4.147 28 H 0.027 0.973 29 H 0.042 0.958 30 H -0.003 1.003 31 H 0.253 0.747 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -21.448 -11.671 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.008 4.008 14 N -0.339 5.339 15 C 0.302 3.698 16 O -0.407 6.407 17 C -0.102 4.102 18 N -0.229 5.229 19 C -0.091 4.091 20 C -0.052 4.052 21 N -0.349 5.349 22 C -0.064 4.064 23 C 0.269 3.731 24 O -0.422 6.422 25 C -0.091 4.091 26 C -0.014 4.014 27 C -0.187 4.187 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.146 0.854 47 H 0.133 0.867 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.478 -21.733 -10.469 24.169 hybrid contribution 0.941 1.106 -0.936 1.727 sum 2.419 -20.627 -11.405 23.694 Atomic orbital electron populations 1.20736 0.82749 0.95379 0.99129 1.43944 1.01777 1.00140 1.85879 1.19172 0.98267 0.85556 1.35586 0.91524 1.25035 0.97800 0.98518 0.98274 1.70057 1.18467 1.27268 1.39427 0.86340 0.78511 0.83862 0.77813 1.21142 1.21670 1.20971 1.20270 0.95982 0.86078 0.90588 1.22493 1.00009 0.94375 1.01509 1.21701 0.99772 0.93777 0.85539 1.48167 1.65877 1.11686 1.08215 1.20264 0.77014 0.81676 0.90893 1.90667 1.51252 1.65662 1.33102 1.22155 1.01497 0.90346 0.96209 1.62183 1.34991 1.00781 1.24970 1.22685 0.97073 1.01557 0.87807 1.22236 0.83961 1.00629 0.98332 1.47470 1.15301 1.65879 1.06232 1.21696 0.90648 1.01160 0.92856 1.21539 0.90325 0.77599 0.83617 1.90723 1.25234 1.46828 1.79415 1.22641 0.89322 1.00925 0.96261 1.21901 1.00454 0.94280 0.84750 1.22557 1.00066 0.94598 1.01485 0.95478 0.93940 0.98481 0.93709 0.91976 0.92182 0.90620 0.89549 0.91797 0.87080 0.91669 0.89038 0.87762 0.89756 0.91141 0.92624 0.90353 0.91197 0.85401 0.86715 0.91314 0.90866 0.91815 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 8.03 59.85 0.48 4.43 16 2 N -0.60 -14.24 2.81 -173.43 -0.49 -14.73 16 3 C -0.26 -6.81 9.59 -15.06 -0.14 -6.96 16 4 H 0.07 1.72 7.82 -52.48 -0.41 1.31 16 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 6 N -0.91 -26.10 10.64 55.49 0.59 -25.51 16 7 Si 0.90 21.49 29.57 -169.99 -5.03 16.46 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.18 3.39 2.55 -67.89 -0.17 3.22 16 12 C -0.14 -2.55 5.34 -26.62 -0.14 -2.70 16 13 C 0.11 1.73 6.43 -3.71 -0.02 1.71 16 14 N -0.61 -8.27 2.97 -172.50 -0.51 -8.78 16 15 C 0.51 7.07 7.29 -10.99 -0.08 6.99 16 16 O -0.53 -8.96 13.95 5.55 0.08 -8.89 16 17 C 0.03 0.28 2.85 -4.98 -0.01 0.27 16 18 N -0.51 -4.80 4.75 -237.56 -1.13 -5.93 16 19 C 0.04 0.21 6.03 -3.67 -0.02 0.19 16 20 C 0.07 0.38 5.69 -4.32 -0.02 0.35 16 21 N -0.61 -5.15 3.04 -182.48 -0.55 -5.71 16 22 C 0.08 0.57 10.30 59.85 0.62 1.18 16 23 C 0.48 5.58 6.81 -11.67 -0.08 5.50 16 24 O -0.55 -8.46 16.33 5.55 0.09 -8.36 16 25 C 0.04 0.42 5.49 -5.19 -0.03 0.40 16 26 C 0.11 1.29 6.37 -3.48 -0.02 1.26 16 27 C -0.15 -2.21 5.34 -26.38 -0.14 -2.35 16 28 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 29 H 0.04 1.10 7.22 -51.93 -0.37 0.73 16 30 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.06 1.19 7.86 -51.93 -0.41 0.79 16 33 H 0.06 1.14 7.72 -51.92 -0.40 0.74 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.11 0.88 7.65 -51.93 -0.40 0.48 16 38 H 0.07 0.60 6.01 -51.93 -0.31 0.29 16 39 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.26 7.98 -51.93 -0.41 -0.15 16 42 H 0.07 0.33 7.09 -51.93 -0.37 -0.04 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.69 7.26 -51.93 -0.38 0.31 16 45 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 46 H 0.13 1.74 5.89 -51.93 -0.31 1.43 16 47 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 50 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 51 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -34.11 385.95 -9.46 -43.56 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.44 Total: -1.39 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 0.11 Total: 13.45 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -2.09 Total: -60.65 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.17 Total: -17.25 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.11 -9.46 -43.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985505241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.286 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds