Wall clock time and date at job start Tue Mar 31 2020 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36929 * 119.99939 * 2 1 4 4 H 1.08004 * 119.99859 * 202.99309 * 3 2 1 5 5 C 1.38819 * 120.00406 * 22.99448 * 3 2 1 6 6 N 1.31614 * 119.99382 * 11.63273 * 5 3 2 7 7 Si 1.86794 * 120.00160 * 191.63760 * 5 3 2 8 8 H 1.48507 * 109.47187 * 59.99855 * 7 5 3 9 9 H 1.48500 * 109.47159 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47316 * 300.00201 * 7 5 3 11 11 C 1.46496 * 119.99715 * 179.97438 * 2 1 3 12 12 C 1.53034 * 109.46714 * 300.00263 * 11 2 1 13 13 C 1.53188 * 109.31860 * 181.38581 * 12 11 2 14 14 N 1.46932 * 108.77379 * 305.36529 * 13 12 11 15 15 C 1.34773 * 120.63024 * 233.58406 * 14 13 12 16 16 O 1.21284 * 120.00103 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00117 * 179.72531 * 15 14 13 18 18 N 1.46897 * 109.47294 * 180.02562 * 17 15 14 19 19 C 1.47198 * 111.00156 * 169.99937 * 18 17 15 20 20 C 1.52982 * 108.72579 * 54.36564 * 19 18 17 21 21 N 1.46011 * 110.04524 * 50.29790 * 20 19 18 22 22 C 1.46497 * 118.53725 * 161.81357 * 21 20 19 23 23 C 1.33715 * 122.92270 * 341.82913 * 21 20 19 24 24 O 1.21287 * 118.62405 * 181.68669 * 23 21 20 25 25 C 1.46904 * 110.99892 * 292.88852 * 18 17 15 26 26 C 1.46924 * 118.73654 * 53.86043 * 14 13 12 27 27 C 1.53045 * 109.45792 * 60.07346 * 11 2 1 28 28 H 1.09005 * 109.46757 * 273.84771 * 1 2 3 29 29 H 1.08997 * 109.46688 * 33.84446 * 1 2 3 30 30 H 1.08994 * 109.47218 * 153.85012 * 1 2 3 31 31 H 0.97006 * 119.99566 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.45001 * 180.02562 * 11 2 1 33 33 H 1.09008 * 109.49565 * 61.43014 * 12 11 2 34 34 H 1.09001 * 109.52294 * 301.35624 * 12 11 2 35 35 H 1.09000 * 109.58808 * 185.57884 * 13 12 11 36 36 H 1.09000 * 109.70237 * 65.22027 * 13 12 11 37 37 H 1.08999 * 109.47006 * 300.00170 * 17 15 14 38 38 H 1.08998 * 109.47236 * 59.99638 * 17 15 14 39 39 H 1.08993 * 109.59443 * 174.13847 * 19 18 17 40 40 H 1.09000 * 109.59234 * 294.44659 * 19 18 17 41 41 H 1.09000 * 109.37082 * 170.46759 * 20 19 18 42 42 H 1.08996 * 109.37602 * 290.11510 * 20 19 18 43 43 H 1.08997 * 109.46915 * 90.00105 * 22 21 20 44 44 H 1.09002 * 109.46743 * 209.99381 * 22 21 20 45 45 H 1.08999 * 109.47322 * 329.99560 * 22 21 20 46 46 H 1.08996 * 109.38452 * 47.08855 * 25 18 17 47 47 H 1.08997 * 109.38343 * 166.77758 * 25 18 17 48 48 H 1.08992 * 109.58981 * 65.92468 * 26 14 13 49 49 H 1.09000 * 109.58326 * 186.35701 * 26 14 13 50 50 H 1.08998 * 109.49730 * 298.56100 * 27 11 2 51 51 H 1.08993 * 109.49955 * 58.65981 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1654 1.2230 -0.3654 5 6 1.5384 2.3403 0.4696 6 7 0.3979 2.2623 1.1219 7 14 2.3344 4.0045 0.1757 8 1 2.4684 4.2381 -1.2847 9 1 1.4886 5.0698 0.7714 10 1 3.6787 4.0285 0.8061 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0706 1.2504 13 6 2.6212 -3.3808 1.2652 14 7 2.3849 -4.0910 0.0008 15 6 1.9587 -5.3696 0.0007 16 8 1.7670 -5.9451 1.0510 17 6 1.7149 -6.0825 -1.3044 18 7 1.2588 -7.4528 -1.0361 19 6 0.7850 -8.1021 -2.2693 20 6 1.8907 -8.0204 -3.3233 21 7 3.1534 -8.4917 -2.7616 22 6 4.2273 -8.8778 -3.6802 23 6 3.3730 -8.5868 -1.4460 24 8 4.4625 -8.9589 -1.0643 25 6 2.3268 -8.2522 -0.4209 26 6 2.6279 -3.3828 -1.2633 27 6 1.8289 -2.0707 -1.2497 28 1 -0.3633 0.0690 1.0254 29 1 -0.3632 0.8535 -0.5723 30 1 -0.3633 -0.9224 -0.4529 31 1 -0.0294 3.0690 1.4497 32 1 3.2691 -1.0692 0.0009 33 1 0.7603 -2.2917 1.2381 34 1 2.0684 -1.4894 2.1406 35 1 2.2898 -3.9994 2.0992 36 1 3.6845 -3.1653 1.3700 37 1 0.9515 -5.5504 -1.8719 38 1 2.6401 -6.1132 -1.8799 39 1 0.5506 -9.1468 -2.0655 40 1 -0.1071 -7.5912 -2.6318 41 1 1.6216 -8.6405 -4.1784 42 1 2.0035 -6.9867 -3.6498 43 1 4.8489 -8.0094 -3.8979 44 1 4.8372 -9.6550 -3.2198 45 1 3.7946 -9.2563 -4.6063 46 1 2.7830 -7.6838 0.3895 47 1 1.9041 -9.1739 -0.0211 48 1 3.6914 -3.1652 -1.3617 49 1 2.3009 -4.0027 -2.0981 50 1 0.7617 -2.2920 -1.2385 51 1 2.0711 -1.4895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985505241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:31 Heat of formation + Delta-G solvation = -39.104882 kcal Electronic energy + Delta-G solvation = -31015.409084 eV Core-core repulsion = 26950.355340 eV Total energy + Delta-G solvation = -4065.053744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.09865 -40.96724 -39.09677 -38.19312 -36.69498 -35.98413 -33.96548 -32.38721 -31.46774 -30.98216 -30.11412 -28.03204 -27.98222 -26.30986 -25.66134 -24.21317 -23.91382 -23.20213 -21.33917 -20.11830 -19.24496 -18.74764 -18.52556 -17.90474 -17.54222 -17.22375 -16.94543 -16.74225 -16.45492 -15.90075 -15.73233 -15.70806 -15.08229 -15.07215 -14.84867 -14.57980 -14.33537 -14.18805 -13.98620 -13.90461 -13.71340 -13.47596 -13.17369 -13.08037 -13.04122 -12.79086 -12.74048 -12.60366 -12.54856 -12.33312 -12.22194 -12.15879 -12.06189 -11.80668 -11.62115 -11.55415 -11.21492 -10.77472 -10.58648 -9.84645 -9.64915 -9.35525 -8.73931 -7.79610 -5.27775 1.41195 1.48102 1.49618 1.56192 1.61115 1.83034 1.96605 2.52541 2.80146 3.33704 3.40719 3.46285 3.64710 3.84128 3.89599 3.98837 4.10186 4.14427 4.20155 4.20629 4.33812 4.34788 4.36863 4.40257 4.55562 4.57668 4.60237 4.68356 4.71175 4.75221 4.81475 4.84275 4.89553 4.94466 4.98503 5.02118 5.11733 5.27881 5.30618 5.37616 5.51881 5.59234 5.64781 5.69166 5.75578 5.82861 6.27577 6.36165 6.45996 6.97195 7.18512 7.18973 7.91853 8.35975 9.23375 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.002397 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.145194 B =11677.844346 C =11868.801023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.611 5.611 3 C -0.260 4.260 4 H 0.073 0.927 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.968 3.032 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.277 1.277 11 C 0.172 3.828 12 C -0.130 4.130 13 C 0.125 3.875 14 N -0.609 5.609 15 C 0.507 3.493 16 O -0.569 6.569 17 C 0.037 3.963 18 N -0.519 5.519 19 C 0.036 3.964 20 C 0.069 3.931 21 N -0.607 5.607 22 C 0.076 3.924 23 C 0.479 3.521 24 O -0.598 6.598 25 C 0.047 3.953 26 C 0.116 3.884 27 C -0.134 4.134 28 H -0.006 1.006 29 H 0.015 0.985 30 H 0.029 0.971 31 H 0.246 0.754 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.120 0.880 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.058 0.942 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -22.660 -15.210 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.333 5.333 3 C -0.390 4.390 4 H 0.091 0.909 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.796 3.204 8 H -0.202 1.202 9 H -0.225 1.225 10 H -0.203 1.203 11 C 0.065 3.935 12 C -0.170 4.170 13 C 0.001 3.999 14 N -0.342 5.342 15 C 0.296 3.704 16 O -0.448 6.448 17 C -0.093 4.093 18 N -0.242 5.242 19 C -0.091 4.091 20 C -0.054 4.054 21 N -0.339 5.339 22 C -0.066 4.066 23 C 0.267 3.733 24 O -0.479 6.479 25 C -0.084 4.084 26 C -0.007 4.007 27 C -0.174 4.174 28 H 0.012 0.988 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.123 0.877 46 H 0.113 0.887 47 H 0.138 0.862 48 H 0.100 0.900 49 H 0.133 0.867 50 H 0.077 0.923 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.552 -22.972 -14.085 26.991 hybrid contribution 0.902 1.410 0.151 1.681 sum 2.454 -21.562 -13.935 25.790 Atomic orbital electron populations 1.20404 0.83205 0.95659 0.96904 1.44190 1.01834 1.01332 1.85968 1.19560 0.98501 0.86714 1.34227 0.90893 1.25800 0.98585 1.01901 0.98791 1.70241 1.20019 1.27478 1.41092 0.85334 0.77543 0.79629 0.77875 1.20226 1.22508 1.20298 1.20532 0.95321 0.84755 0.92844 1.22267 0.99378 0.95397 0.99981 1.21430 0.99714 0.92125 0.86618 1.48253 1.65848 1.11986 1.08127 1.21090 0.75812 0.81415 0.92095 1.90657 1.52660 1.66451 1.34994 1.22169 1.03011 0.90399 0.93745 1.62186 1.34036 1.00693 1.27321 1.22867 0.97968 1.01961 0.86268 1.22527 0.81944 1.02192 0.98759 1.47593 1.16744 1.64329 1.05277 1.21811 0.90555 1.00679 0.93568 1.21640 0.89545 0.77237 0.84905 1.90696 1.27171 1.49529 1.80490 1.22414 0.89591 1.00891 0.95554 1.22019 1.00772 0.92902 0.84981 1.22354 1.00294 0.95713 0.99020 0.98792 0.96614 0.95303 0.94484 0.92266 0.93720 0.93332 0.90711 0.90702 0.84070 0.90497 0.88518 0.85179 0.86616 0.89460 0.92467 0.92668 0.87687 0.88653 0.86174 0.90027 0.86675 0.92281 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 8.03 127.77 1.03 9.96 16 2 N -0.61 -29.33 2.81 -702.63 -1.97 -31.30 16 3 C -0.26 -13.85 9.59 84.04 0.81 -13.04 16 4 H 0.07 3.72 7.82 -2.91 -0.02 3.70 16 5 C -0.06 -3.11 5.12 84.86 0.43 -2.67 16 6 N -0.94 -55.78 10.64 21.65 0.23 -55.55 16 7 Si 0.97 44.56 29.57 68.60 2.03 46.59 16 8 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 C 0.17 6.38 2.55 45.02 0.11 6.49 16 12 C -0.13 -4.68 5.34 30.67 0.16 -4.52 16 13 C 0.12 3.73 6.43 86.36 0.56 4.28 16 14 N -0.61 -15.39 2.97 -818.07 -2.43 -17.81 16 15 C 0.51 13.04 7.29 87.66 0.64 13.68 16 16 O -0.57 -19.22 13.95 -3.04 -0.04 -19.26 16 17 C 0.04 0.59 2.85 85.56 0.24 0.83 16 18 N -0.52 -8.43 4.75 -905.49 -4.30 -12.73 16 19 C 0.04 0.26 6.03 86.24 0.52 0.78 16 20 C 0.07 0.36 5.69 86.47 0.49 0.85 16 21 N -0.61 -8.37 3.04 -850.22 -2.58 -10.95 16 22 C 0.08 0.89 10.30 127.77 1.32 2.20 16 23 C 0.48 10.63 6.81 87.68 0.60 11.22 16 24 O -0.60 -18.92 16.33 -3.05 -0.05 -18.97 16 25 C 0.05 0.98 5.49 85.42 0.47 1.45 16 26 C 0.12 2.27 6.37 86.51 0.55 2.82 16 27 C -0.13 -3.67 5.34 30.82 0.16 -3.50 16 28 H -0.01 -0.34 7.42 -2.38 -0.02 -0.36 16 29 H 0.02 0.81 7.22 -2.39 -0.02 0.80 16 30 H 0.03 1.19 6.46 -2.39 -0.02 1.17 16 31 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 32 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 33 H 0.04 1.72 7.72 -2.38 -0.02 1.71 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.43 7.01 -2.39 -0.02 2.42 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.14 1.42 7.65 -2.39 -0.02 1.40 16 38 H 0.08 1.07 6.01 -2.39 -0.01 1.06 16 39 H 0.10 0.62 8.08 -2.39 -0.02 0.60 16 40 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.12 0.00 7.98 -2.39 -0.02 -0.02 16 42 H 0.09 0.26 7.09 -2.39 -0.02 0.24 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.05 0.92 7.26 -2.39 -0.02 0.91 16 45 H 0.10 0.48 7.92 -2.39 -0.02 0.46 16 46 H 0.10 2.68 5.89 -2.39 -0.01 2.66 16 47 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.12 1.37 5.93 -2.39 -0.01 1.35 16 50 H 0.06 1.69 6.72 -2.39 -0.02 1.67 16 51 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -79.22 385.95 -0.11 -79.33 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.92 Total: 9.82 kcal Atomic # 6 Polarization: 22.75 SS G_CDS: 8.09 Total: 30.84 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -11.06 Total: -128.35 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.09 Total: -38.23 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -79.22 -0.11 -79.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985505241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.225 kcal (2) G-P(sol) polarization free energy of solvation -79.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds