Wall clock time and date at job start Tue Mar 31 2020 22:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00014 * 2 1 4 4 O 1.21282 * 119.99741 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00240 * 0.02562 * 3 2 1 6 6 N 1.46900 * 109.47264 * 179.97438 * 5 3 2 7 7 C 1.47185 * 111.00115 * 188.93237 * 6 5 3 8 8 C 1.52993 * 108.72017 * 167.61850 * 7 6 5 9 9 N 1.46010 * 110.03663 * 50.30920 * 8 7 6 10 10 C 1.46500 * 118.53510 * 161.86865 * 9 8 7 11 11 C 1.33718 * 122.92751 * 341.83351 * 9 8 7 12 12 O 1.21279 * 118.62654 * 181.68890 * 11 9 8 13 13 C 1.46903 * 111.00101 * 66.04332 * 6 5 3 14 14 C 1.46507 * 119.99627 * 179.97438 * 2 1 3 15 15 C 1.53036 * 109.45897 * 60.00447 * 14 2 1 16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 2 17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14 18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18 26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15 27 27 C 1.53043 * 109.45897 * 299.93127 * 14 2 1 28 28 H 1.08994 * 109.47201 * 270.00443 * 1 2 3 29 29 H 1.09000 * 109.46830 * 30.00191 * 1 2 3 30 30 H 1.08996 * 109.47301 * 149.99881 * 1 2 3 31 31 H 1.09009 * 109.46867 * 299.99560 * 5 3 2 32 32 H 1.08998 * 109.47719 * 59.99016 * 5 3 2 33 33 H 1.09003 * 109.59594 * 287.41022 * 7 6 5 34 34 H 1.09003 * 109.59414 * 47.85883 * 7 6 5 35 35 H 1.08998 * 109.37287 * 290.13430 * 8 7 6 36 36 H 1.09000 * 109.28305 * 170.41964 * 8 7 6 37 37 H 1.09003 * 109.46915 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.46835 * 299.97164 * 10 9 8 39 39 H 1.09000 * 109.47594 * 59.97670 * 10 9 8 40 40 H 1.09000 * 109.38345 * 293.82288 * 13 6 5 41 41 H 1.09002 * 109.38661 * 53.60669 * 13 6 5 42 42 H 1.08996 * 109.45453 * 179.97438 * 14 2 1 43 43 H 1.09001 * 109.50071 * 58.66060 * 15 14 2 44 44 H 1.09005 * 109.49477 * 298.56396 * 15 14 2 45 45 H 1.09000 * 109.58954 * 174.41929 * 16 15 14 46 46 H 1.08996 * 109.58649 * 294.70243 * 16 15 14 47 47 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.46458 * 293.56938 * 26 17 16 49 49 H 1.08992 * 109.71060 * 173.28601 * 26 17 16 50 50 H 1.08995 * 109.49931 * 301.34255 * 27 14 2 51 51 H 1.09003 * 109.49592 * 61.43695 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 7 2.3401 3.5888 0.0011 7 6 1.6511 4.8718 0.2150 8 6 2.6974 5.9470 0.5148 9 7 3.7521 5.9139 -0.4944 10 6 4.6206 7.0850 -0.6376 11 6 3.9610 4.8621 -1.2932 12 8 4.8796 4.9063 -2.0838 13 6 3.1055 3.6277 -1.2522 14 6 2.1975 -1.2688 0.0006 15 6 1.8276 -2.0716 -1.2488 16 6 2.6211 -3.3818 -1.2624 17 7 2.3880 -4.0925 0.0023 18 6 1.9570 -5.3922 0.0031 19 1 1.3676 -5.7662 -0.8210 20 6 2.2775 -6.2291 1.0632 21 7 3.2475 -5.9014 1.8903 22 14 1.3321 -7.8202 1.3159 23 1 0.2988 -7.9555 0.2580 24 1 2.2693 -8.9698 1.2430 25 1 0.6762 -7.8001 2.6480 26 6 2.6223 -3.3800 1.2662 27 6 1.8288 -2.0698 1.2515 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7585 2.5302 -0.8893 32 1 0.7590 2.5299 0.8907 33 1 1.0953 5.1424 -0.6827 34 1 0.9665 4.7828 1.0585 35 1 3.1317 5.7648 1.4978 36 1 2.2195 6.9266 0.5064 37 1 5.3499 6.9021 -1.4268 38 1 4.0172 7.9554 -0.8952 39 1 5.1408 7.2688 0.3024 40 1 3.7413 2.7446 -1.3153 41 1 2.4165 3.6384 -2.0968 42 1 3.2690 -1.0694 0.0000 43 1 2.0689 -1.4908 -2.1391 44 1 0.7603 -2.2927 -1.2363 45 1 2.2898 -4.0011 -2.0959 46 1 3.6839 -3.1643 -1.3687 47 1 3.4717 -6.4864 2.6308 48 1 3.6854 -3.1622 1.3686 49 1 2.2936 -3.9970 2.1024 50 1 2.0709 -1.4877 2.1406 51 1 0.7615 -2.2910 1.2404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005629971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:47 Heat of formation + Delta-G solvation = -17.652707 kcal Electronic energy + Delta-G solvation = -30550.401030 eV Core-core repulsion = 26486.277522 eV Total energy + Delta-G solvation = -4064.123508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.88612 -39.89610 -37.84720 -37.01225 -35.48652 -35.08397 -32.56557 -30.75656 -30.23818 -29.83158 -29.29629 -26.96660 -26.79873 -25.23505 -24.64081 -23.05958 -22.19825 -21.80767 -19.38488 -18.98319 -18.83794 -17.61695 -17.04534 -16.91182 -16.55821 -16.41611 -15.80825 -15.63132 -14.98393 -14.79267 -14.68494 -14.43259 -13.87510 -13.63897 -13.57713 -13.34396 -13.28183 -13.04585 -12.83091 -12.77158 -12.62065 -12.47637 -12.38953 -12.27479 -12.19955 -11.85532 -11.65301 -11.47491 -11.12365 -10.80710 -10.74280 -10.37304 -10.19912 -10.09743 -10.08837 -9.76692 -9.68690 -9.49311 -9.04503 -8.80274 -8.54679 -8.31768 -6.69038 -5.79728 -3.22553 2.38361 2.65958 2.68824 2.89604 3.35945 3.43933 3.45946 3.49238 4.18685 4.28495 4.40148 4.48408 4.66940 4.71599 4.84823 4.96643 5.02818 5.05211 5.09583 5.10345 5.17890 5.31060 5.34727 5.40002 5.41759 5.49884 5.52077 5.60627 5.64154 5.67310 5.85909 6.02497 6.06487 6.21980 6.28313 6.32510 6.44201 6.47784 6.58133 6.61476 6.76379 6.90112 6.95613 7.09654 7.34043 7.53065 7.66230 7.78921 7.89751 8.30247 8.43951 9.20002 9.83247 10.40368 11.29090 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028298 B = 0.002192 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.242303 B =12767.813810 C =13024.982387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.609 5.609 3 C 0.509 3.491 4 O -0.524 6.524 5 C 0.037 3.963 6 N -0.515 5.515 7 C 0.034 3.966 8 C 0.121 3.879 9 N -0.610 5.610 10 C 0.073 3.927 11 C 0.527 3.473 12 O -0.549 6.549 13 C 0.035 3.965 14 C 0.146 3.854 15 C -0.138 4.138 16 C 0.147 3.853 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.173 3.827 27 C -0.144 4.144 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.136 0.864 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.090 0.910 50 H 0.050 0.950 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 25.426 -2.280 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.342 5.342 3 C 0.296 3.704 4 O -0.400 6.400 5 C -0.094 4.094 6 N -0.241 5.241 7 C -0.094 4.094 8 C -0.002 4.002 9 N -0.344 5.344 10 C -0.070 4.070 11 C 0.315 3.685 12 O -0.426 6.426 13 C -0.095 4.095 14 C 0.044 3.956 15 C -0.178 4.178 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.047 3.953 27 C -0.184 4.184 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.154 0.846 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.039 0.961 49 H 0.108 0.892 50 H 0.069 0.931 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.292 25.251 -2.175 26.373 hybrid contribution -1.303 -0.673 -0.252 1.488 sum -8.595 24.578 -2.427 26.150 Atomic orbital electron populations 1.21763 0.80214 1.02967 1.01858 1.48165 1.06848 1.06366 1.72813 1.20340 0.88225 0.84932 0.76947 1.90689 1.13635 1.86772 1.48874 1.22114 0.94056 0.89786 1.03419 1.62159 1.24970 1.02059 1.34876 1.22564 0.95748 0.88935 1.02195 1.21488 0.87960 0.98659 0.92088 1.47308 1.33900 1.16535 1.36699 1.21736 0.95268 0.86777 1.03211 1.20121 0.84786 0.83828 0.79732 1.90716 1.31445 1.81416 1.38980 1.22535 0.97694 0.98506 0.90783 1.21197 0.97350 0.80773 0.96277 1.22367 1.01281 0.98101 0.96026 1.20858 0.95886 0.90902 0.90325 1.44094 1.77984 1.10041 0.99405 1.19205 1.25896 0.86491 1.06592 0.91632 1.25069 0.96948 0.97694 0.99990 1.70043 1.28251 1.38149 1.18133 0.86232 0.79475 0.83397 0.77711 1.20281 1.21718 1.21586 1.20760 0.95374 0.88679 0.90495 1.22534 1.01510 0.98903 0.95421 0.92521 0.91827 0.90350 0.91541 0.87296 0.93473 0.88224 0.90567 0.90126 0.89150 0.92299 0.92116 0.84602 0.91471 0.88631 0.92983 0.92107 0.92492 0.96179 0.93629 0.96144 0.89196 0.93084 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 9.33 59.85 0.56 1.28 16 2 N -0.61 -8.24 2.76 -173.89 -0.48 -8.72 16 3 C 0.51 7.01 7.43 -10.99 -0.08 6.93 16 4 O -0.52 -9.49 13.63 5.56 0.08 -9.42 16 5 C 0.04 0.33 3.99 -4.98 -0.02 0.31 16 6 N -0.51 -5.12 4.47 -237.54 -1.06 -6.18 16 7 C 0.03 0.21 5.60 -3.67 -0.02 0.18 16 8 C 0.12 0.76 6.64 -4.31 -0.03 0.73 16 9 N -0.61 -5.91 3.23 -182.47 -0.59 -6.50 16 10 C 0.07 0.57 10.55 59.85 0.63 1.20 16 11 C 0.53 6.86 7.57 -11.67 -0.09 6.77 16 12 O -0.55 -9.13 16.07 5.56 0.09 -9.04 16 13 C 0.03 0.41 5.14 -5.19 -0.03 0.39 16 14 C 0.15 2.51 2.48 -67.89 -0.17 2.34 16 15 C -0.14 -2.35 5.31 -26.61 -0.14 -2.49 16 16 C 0.15 3.08 6.51 -3.71 -0.02 3.06 16 17 N -0.59 -14.67 3.00 -172.29 -0.52 -15.19 16 18 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 19 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 21 N -0.90 -26.13 11.20 55.49 0.62 -25.51 16 22 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.17 4.12 5.30 -3.69 -0.02 4.10 16 27 C -0.14 -2.69 5.34 -26.61 -0.14 -2.84 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.41 6.44 -51.93 -0.33 0.08 16 30 H 0.08 0.81 6.45 -51.93 -0.34 0.47 16 31 H 0.07 0.46 7.31 -51.92 -0.38 0.08 16 32 H 0.11 0.73 7.90 -51.93 -0.41 0.32 16 33 H 0.05 0.25 8.08 -51.93 -0.42 -0.17 16 34 H 0.10 0.38 7.91 -51.93 -0.41 -0.03 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.29 8.13 -51.93 -0.42 -0.13 16 37 H 0.09 0.90 6.67 -51.93 -0.35 0.55 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.14 2.06 6.01 -51.93 -0.31 1.75 16 41 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 42 H 0.10 1.92 6.90 -51.93 -0.36 1.56 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 45 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 50 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -35.08 390.60 -9.36 -44.44 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.55 Total: -1.15 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 0.20 Total: 14.96 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -2.03 Total: -62.10 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.08 -9.36 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005629971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.787 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds