Wall clock time and date at job start Tue Mar 31 2020 22:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00014 * 2 1 4 4 O 1.21282 * 119.99741 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00240 * 0.02562 * 3 2 1 6 6 N 1.46900 * 109.47264 * 179.97438 * 5 3 2 7 7 C 1.47185 * 111.00115 * 188.93237 * 6 5 3 8 8 C 1.52993 * 108.72017 * 167.61850 * 7 6 5 9 9 N 1.46010 * 110.03663 * 50.30920 * 8 7 6 10 10 C 1.46500 * 118.53510 * 161.86865 * 9 8 7 11 11 C 1.33718 * 122.92751 * 341.83351 * 9 8 7 12 12 O 1.21279 * 118.62654 * 181.68890 * 11 9 8 13 13 C 1.46903 * 111.00101 * 66.04332 * 6 5 3 14 14 C 1.46507 * 119.99627 * 179.97438 * 2 1 3 15 15 C 1.53036 * 109.45897 * 60.00447 * 14 2 1 16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 2 17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14 18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18 26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15 27 27 C 1.53043 * 109.45897 * 299.93127 * 14 2 1 28 28 H 1.08994 * 109.47201 * 270.00443 * 1 2 3 29 29 H 1.09000 * 109.46830 * 30.00191 * 1 2 3 30 30 H 1.08996 * 109.47301 * 149.99881 * 1 2 3 31 31 H 1.09009 * 109.46867 * 299.99560 * 5 3 2 32 32 H 1.08998 * 109.47719 * 59.99016 * 5 3 2 33 33 H 1.09003 * 109.59594 * 287.41022 * 7 6 5 34 34 H 1.09003 * 109.59414 * 47.85883 * 7 6 5 35 35 H 1.08998 * 109.37287 * 290.13430 * 8 7 6 36 36 H 1.09000 * 109.28305 * 170.41964 * 8 7 6 37 37 H 1.09003 * 109.46915 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.46835 * 299.97164 * 10 9 8 39 39 H 1.09000 * 109.47594 * 59.97670 * 10 9 8 40 40 H 1.09000 * 109.38345 * 293.82288 * 13 6 5 41 41 H 1.09002 * 109.38661 * 53.60669 * 13 6 5 42 42 H 1.08996 * 109.45453 * 179.97438 * 14 2 1 43 43 H 1.09001 * 109.50071 * 58.66060 * 15 14 2 44 44 H 1.09005 * 109.49477 * 298.56396 * 15 14 2 45 45 H 1.09000 * 109.58954 * 174.41929 * 16 15 14 46 46 H 1.08996 * 109.58649 * 294.70243 * 16 15 14 47 47 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.46458 * 293.56938 * 26 17 16 49 49 H 1.08992 * 109.71060 * 173.28601 * 26 17 16 50 50 H 1.08995 * 109.49931 * 301.34255 * 27 14 2 51 51 H 1.09003 * 109.49592 * 61.43695 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 7 2.3401 3.5888 0.0011 7 6 1.6511 4.8718 0.2150 8 6 2.6974 5.9470 0.5148 9 7 3.7521 5.9139 -0.4944 10 6 4.6206 7.0850 -0.6376 11 6 3.9610 4.8621 -1.2932 12 8 4.8796 4.9063 -2.0838 13 6 3.1055 3.6277 -1.2522 14 6 2.1975 -1.2688 0.0006 15 6 1.8276 -2.0716 -1.2488 16 6 2.6211 -3.3818 -1.2624 17 7 2.3880 -4.0925 0.0023 18 6 1.9570 -5.3922 0.0031 19 1 1.3676 -5.7662 -0.8210 20 6 2.2775 -6.2291 1.0632 21 7 3.2475 -5.9014 1.8903 22 14 1.3321 -7.8202 1.3159 23 1 0.2988 -7.9555 0.2580 24 1 2.2693 -8.9698 1.2430 25 1 0.6762 -7.8001 2.6480 26 6 2.6223 -3.3800 1.2662 27 6 1.8288 -2.0698 1.2515 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7585 2.5302 -0.8893 32 1 0.7590 2.5299 0.8907 33 1 1.0953 5.1424 -0.6827 34 1 0.9665 4.7828 1.0585 35 1 3.1317 5.7648 1.4978 36 1 2.2195 6.9266 0.5064 37 1 5.3499 6.9021 -1.4268 38 1 4.0172 7.9554 -0.8952 39 1 5.1408 7.2688 0.3024 40 1 3.7413 2.7446 -1.3153 41 1 2.4165 3.6384 -2.0968 42 1 3.2690 -1.0694 0.0000 43 1 2.0689 -1.4908 -2.1391 44 1 0.7603 -2.2927 -1.2363 45 1 2.2898 -4.0011 -2.0959 46 1 3.6839 -3.1643 -1.3687 47 1 3.4717 -6.4864 2.6308 48 1 3.6854 -3.1622 1.3686 49 1 2.2936 -3.9970 2.1024 50 1 2.0709 -1.4877 2.1406 51 1 0.7615 -2.2910 1.2404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005629971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:46 Heat of formation + Delta-G solvation = -43.774557 kcal Electronic energy + Delta-G solvation = -30551.533759 eV Core-core repulsion = 26486.277522 eV Total energy + Delta-G solvation = -4065.256236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74046 -40.98458 -39.17365 -38.06287 -36.57984 -36.17553 -34.30848 -32.15261 -31.52954 -31.01001 -30.35271 -27.89286 -27.74343 -26.59448 -25.66464 -24.00071 -23.87690 -23.19148 -20.85446 -20.05873 -19.70449 -18.76695 -18.42666 -17.88142 -17.54700 -17.27721 -16.97276 -16.70950 -16.50095 -15.77420 -15.59710 -15.48901 -15.39203 -15.14825 -14.83429 -14.51211 -14.38174 -14.17310 -14.11623 -13.84910 -13.53839 -13.45891 -13.21593 -13.15175 -13.08308 -13.00579 -12.86225 -12.64604 -12.57017 -12.44164 -12.29210 -12.09301 -11.94937 -11.88216 -11.45678 -11.31409 -11.06950 -10.66734 -10.58185 -9.77911 -9.54523 -9.45215 -8.72432 -7.88197 -5.34891 1.44042 1.47348 1.48792 1.59940 1.68699 1.90861 2.01873 2.51294 2.73094 3.27758 3.45779 3.58025 3.65250 3.80220 3.92297 4.02723 4.07277 4.20697 4.27657 4.30756 4.34520 4.41537 4.43633 4.46855 4.54739 4.62388 4.64084 4.65098 4.73009 4.75865 4.77661 4.86519 4.92087 5.00008 5.01614 5.05517 5.07714 5.14839 5.29200 5.34505 5.45090 5.56511 5.63659 5.67375 5.69641 5.87393 6.31467 6.37784 6.54278 7.01397 7.12724 7.28676 7.82648 8.36269 9.19257 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028298 B = 0.002192 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.242303 B =12767.813810 C =13024.982387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.500 3.500 4 O -0.579 6.579 5 C 0.048 3.952 6 N -0.536 5.536 7 C 0.035 3.965 8 C 0.113 3.887 9 N -0.606 5.606 10 C 0.069 3.931 11 C 0.516 3.484 12 O -0.602 6.602 13 C 0.043 3.957 14 C 0.156 3.844 15 C -0.120 4.120 16 C 0.142 3.858 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.072 0.928 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.262 1.262 24 H -0.296 1.296 25 H -0.289 1.289 26 C 0.180 3.820 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.144 0.856 33 H 0.063 0.937 34 H 0.133 0.867 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.002 0.998 47 H 0.250 0.750 48 H -0.016 1.016 49 H 0.060 0.940 50 H 0.055 0.945 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.097 27.847 -2.194 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C 0.289 3.711 4 O -0.458 6.458 5 C -0.082 4.082 6 N -0.263 5.263 7 C -0.092 4.092 8 C -0.009 4.009 9 N -0.338 5.338 10 C -0.073 4.073 11 C 0.305 3.695 12 O -0.484 6.484 13 C -0.087 4.087 14 C 0.052 3.948 15 C -0.159 4.159 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.090 0.910 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.799 3.201 23 H -0.186 1.186 24 H -0.223 1.223 25 H -0.215 1.215 26 C 0.054 3.946 27 C -0.164 4.164 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.020 0.980 47 H 0.059 0.941 48 H 0.002 0.998 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.651 27.730 -2.076 30.150 hybrid contribution 0.087 -1.360 -0.262 1.388 sum -11.564 26.370 -2.339 28.889 Atomic orbital electron populations 1.22091 0.77093 1.04829 1.03342 1.48117 1.08552 1.04790 1.72564 1.21370 0.87909 0.86447 0.75402 1.90689 1.16409 1.87575 1.51120 1.22167 0.93308 0.86236 1.06467 1.62067 1.26335 1.04212 1.33639 1.22752 0.95737 0.86503 1.04229 1.21850 0.87331 1.00955 0.90767 1.47503 1.34396 1.15818 1.36074 1.21862 0.95315 0.87111 1.03027 1.20426 0.84426 0.84913 0.79781 1.90681 1.33724 1.82519 1.41471 1.22240 0.97608 0.96152 0.92711 1.20699 0.95995 0.82727 0.95416 1.22135 1.01290 0.95840 0.96664 1.21007 0.95664 0.92793 0.88978 1.44350 1.78109 1.09999 1.00741 1.19575 1.25358 0.87453 1.06576 0.91033 1.25891 0.97886 1.01145 1.00034 1.70218 1.30055 1.39466 1.18773 0.85156 0.78154 0.79046 0.77762 1.18649 1.22303 1.21534 1.20522 0.93993 0.90607 0.89487 1.22231 1.01103 0.96328 0.96690 0.91198 0.87706 0.90828 0.88260 0.83817 0.91868 0.84942 0.90679 0.86398 0.92005 0.89213 0.90715 0.88779 0.89856 0.92373 0.91216 0.90452 0.91853 0.98005 0.94124 0.99761 0.92211 0.92612 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 9.33 127.77 1.19 2.19 16 2 N -0.61 -15.13 2.76 -822.45 -2.27 -17.40 16 3 C 0.50 12.97 7.43 87.66 0.65 13.62 16 4 O -0.58 -21.64 13.63 -3.04 -0.04 -21.68 16 5 C 0.05 0.66 3.99 85.56 0.34 1.00 16 6 N -0.54 -9.18 4.47 -905.45 -4.05 -13.23 16 7 C 0.03 0.26 5.60 86.25 0.48 0.74 16 8 C 0.11 0.99 6.64 86.47 0.57 1.56 16 9 N -0.61 -10.80 3.23 -850.20 -2.74 -13.55 16 10 C 0.07 1.00 10.55 127.77 1.35 2.35 16 11 C 0.52 13.57 7.57 87.68 0.66 14.23 16 12 O -0.60 -21.31 16.07 -3.02 -0.05 -21.36 16 13 C 0.04 1.01 5.14 85.42 0.44 1.45 16 14 C 0.16 5.34 2.48 45.02 0.11 5.45 16 15 C -0.12 -3.96 5.31 30.67 0.16 -3.79 16 16 C 0.14 6.02 6.51 86.36 0.56 6.59 16 17 N -0.61 -30.92 3.00 -699.01 -2.10 -33.02 16 18 C -0.26 -14.21 9.58 84.03 0.81 -13.40 16 19 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 20 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 21 N -0.94 -56.57 11.20 21.65 0.24 -56.33 16 22 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 26 C 0.18 8.98 5.30 86.35 0.46 9.43 16 27 C -0.12 -4.65 5.34 30.67 0.16 -4.49 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.70 6.44 -2.39 -0.02 0.69 16 30 H 0.07 1.20 6.45 -2.39 -0.02 1.18 16 31 H 0.10 0.78 7.31 -2.38 -0.02 0.76 16 32 H 0.14 1.03 7.90 -2.39 -0.02 1.01 16 33 H 0.06 0.32 8.08 -2.39 -0.02 0.30 16 34 H 0.13 0.17 7.91 -2.39 -0.02 0.15 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.12 0.22 8.13 -2.39 -0.02 0.20 16 37 H 0.06 1.28 6.67 -2.39 -0.02 1.26 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 3.04 6.01 -2.39 -0.01 3.03 16 41 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 42 H 0.06 2.46 6.90 -2.39 -0.02 2.44 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.08 2.34 6.72 -2.38 -0.02 2.33 16 45 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 46 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 48 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 50 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.07 2.48 7.72 -2.39 -0.02 2.47 16 Total: -1.00 -84.88 390.60 0.31 -84.57 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.91 Total: 11.05 kcal Atomic # 6 Polarization: 25.92 SS G_CDS: 8.37 Total: 34.29 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -10.92 Total: -133.52 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.09 Total: -43.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -84.88 0.31 -84.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005629971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.796 kcal (2) G-P(sol) polarization free energy of solvation -84.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds