Wall clock time and date at job start Tue Mar 31 2020 22:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36935 * 119.99669 * 2 1 4 4 H 1.07999 * 119.99965 * 144.56032 * 3 2 1 5 5 C 1.38814 * 119.99845 * 324.56286 * 3 2 1 6 6 N 1.31622 * 119.99476 * 157.65627 * 5 3 2 7 7 Si 1.86799 * 120.00254 * 337.65730 * 5 3 2 8 8 H 1.48498 * 109.46934 * 95.56085 * 7 5 3 9 9 H 1.48494 * 109.46876 * 215.56379 * 7 5 3 10 10 H 1.48500 * 109.46648 * 335.56037 * 7 5 3 11 11 C 1.46499 * 119.99957 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49253 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.49796 * 60.00367 * 11 2 1 14 14 C 1.53042 * 109.53553 * 178.64912 * 13 11 2 15 15 C 1.53190 * 109.31166 * 61.36695 * 14 13 11 16 16 N 1.46925 * 108.77556 * 305.35960 * 15 14 13 17 17 C 1.34774 * 120.63226 * 233.58657 * 16 15 14 18 18 O 1.21278 * 120.00009 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99936 * 0.02562 * 17 16 15 20 20 N 1.46904 * 109.47025 * 180.02562 * 19 17 16 21 21 C 1.47185 * 111.00090 * 188.93732 * 20 19 17 22 22 C 1.52974 * 108.73362 * 167.63236 * 21 20 19 23 23 N 1.46010 * 110.04118 * 50.28863 * 22 21 20 24 24 C 1.46502 * 118.53716 * 161.84111 * 23 22 21 25 25 C 1.33573 * 122.88638 * 341.74739 * 23 22 21 26 26 O 1.21284 * 118.51669 * 181.76858 * 25 23 22 27 27 C 1.46897 * 111.00077 * 66.04267 * 20 19 17 28 28 C 1.46930 * 118.73514 * 53.86732 * 16 15 14 29 29 H 1.08997 * 109.47494 * 268.02741 * 1 2 3 30 30 H 1.08998 * 109.47175 * 28.03869 * 1 2 3 31 31 H 1.09003 * 109.46535 * 148.02937 * 1 2 3 32 32 H 0.97005 * 119.99762 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.45891 * 58.62799 * 13 11 2 34 34 H 1.08998 * 109.45670 * 298.66868 * 13 11 2 35 35 H 1.09000 * 109.49505 * 301.41452 * 14 13 11 36 36 H 1.08999 * 109.49221 * 181.31525 * 14 13 11 37 37 H 1.08998 * 109.58155 * 185.57573 * 15 14 13 38 38 H 1.09002 * 109.70437 * 65.22249 * 15 14 13 39 39 H 1.08997 * 109.47097 * 59.99924 * 19 17 16 40 40 H 1.09003 * 109.46933 * 299.99221 * 19 17 16 41 41 H 1.09007 * 109.58941 * 287.40728 * 21 20 19 42 42 H 1.09004 * 109.59470 * 47.85123 * 21 20 19 43 43 H 1.08997 * 109.37886 * 170.46694 * 22 21 20 44 44 H 1.09007 * 109.37350 * 290.11581 * 22 21 20 45 45 H 1.08999 * 109.47101 * 89.99725 * 24 23 22 46 46 H 1.08992 * 109.47405 * 210.00221 * 24 23 22 47 47 H 1.09008 * 109.46964 * 330.00609 * 24 23 22 48 48 H 1.08997 * 109.38824 * 293.81922 * 27 20 19 49 49 H 1.08996 * 109.38671 * 53.61485 * 27 20 19 50 50 H 1.09001 * 109.58793 * 65.92560 * 28 16 15 51 51 H 1.09006 * 109.58429 * 186.35177 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0796 1.2726 0.5423 5 6 1.6484 2.2767 -0.6970 6 7 2.0216 3.4954 -0.3687 7 14 0.4441 2.0149 -2.1008 8 1 -0.9444 2.1638 -1.5961 9 1 0.6955 3.0219 -3.1628 10 1 0.6243 0.6508 -2.6595 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6184 -3.3829 -1.2659 15 6 2.2511 -4.2123 -0.0314 16 7 2.4667 -3.3937 1.1695 17 6 3.2376 -3.8449 2.1788 18 8 3.4075 -3.1598 3.1650 19 6 3.8884 -5.2007 2.0818 20 7 4.6688 -5.4574 3.2997 21 6 5.4873 -6.6722 3.1554 22 6 6.4967 -6.7238 4.3036 23 7 5.8144 -6.5241 5.5790 24 6 6.4984 -6.9291 6.8096 25 6 4.5951 -5.9868 5.6729 26 8 4.1159 -5.8275 6.7756 27 6 3.7916 -5.5739 4.4722 28 6 1.8209 -2.0765 1.2519 29 1 -0.3634 -0.0354 1.0270 30 1 -0.3633 0.9070 -0.4831 31 1 -0.3632 -0.8718 -0.5442 32 1 1.6716 4.2577 -0.8560 33 1 2.0694 -1.4911 -2.1385 34 1 0.7608 -2.2919 -1.2365 35 1 3.6861 -3.1642 -1.2528 36 1 2.3723 -3.9439 -2.1674 37 1 2.8820 -5.0999 0.0133 38 1 1.2042 -4.5106 -0.0872 39 1 4.5486 -5.2256 1.2148 40 1 3.1196 -5.9660 1.9754 41 1 4.8451 -7.5522 3.1933 42 1 6.0175 -6.6448 2.2034 43 1 6.9918 -7.6948 4.3066 44 1 7.2418 -5.9402 4.1655 45 1 7.0849 -6.0933 7.1912 46 1 5.7603 -7.2253 7.5549 47 1 7.1590 -7.7700 6.5982 48 1 3.3185 -4.6115 4.6671 49 1 3.0233 -6.3217 4.2764 50 1 0.7392 -2.2021 1.2973 51 1 2.1681 -1.5545 2.1436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027471426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:03 Heat of formation + Delta-G solvation = -10.286214 kcal Electronic energy + Delta-G solvation = -30724.313195 eV Core-core repulsion = 26660.509122 eV Total energy + Delta-G solvation = -4063.804073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88898 -39.97043 -37.96943 -37.04587 -35.47129 -35.29048 -32.44459 -31.57625 -30.71773 -29.98416 -29.17022 -26.94920 -26.17714 -25.30527 -24.66907 -23.69249 -22.74465 -21.77583 -19.68414 -18.97746 -18.76024 -17.65062 -16.97367 -16.84923 -16.76352 -16.41267 -15.78205 -15.50434 -15.32776 -14.93544 -14.86433 -14.26746 -14.20538 -14.06334 -13.72429 -13.64143 -13.29283 -13.13682 -12.88313 -12.71625 -12.60040 -12.50839 -12.42909 -12.31253 -12.26715 -12.14665 -11.83971 -11.61977 -11.33407 -11.06895 -10.74429 -10.50937 -10.40255 -10.14427 -10.08306 -9.95481 -9.66446 -9.53616 -9.03566 -8.82350 -8.67270 -8.35944 -6.87738 -5.99088 -3.39864 2.40918 2.65937 2.69381 2.87808 3.29657 3.44607 3.46391 3.49194 4.19969 4.29758 4.37481 4.50754 4.68065 4.69162 4.72934 4.88124 4.96387 4.97363 4.99408 5.06866 5.10063 5.12820 5.17575 5.22763 5.32363 5.41627 5.43567 5.50475 5.57186 5.61148 5.73330 5.81889 5.96726 6.04260 6.07991 6.18103 6.26969 6.30869 6.36371 6.46756 6.49182 6.57998 6.70114 6.83448 6.86804 7.11735 7.52375 7.91804 8.02284 8.28879 8.37631 8.95956 9.69704 10.07587 11.16486 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.002475 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.196063 B =11312.027225 C =11909.947579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.602 5.602 3 C -0.269 4.269 4 H 0.081 0.919 5 C 0.032 3.968 6 N -0.900 5.900 7 Si 0.885 3.115 8 H -0.288 1.288 9 H -0.304 1.304 10 H -0.270 1.270 11 C 0.169 3.831 12 H 0.075 0.925 13 C -0.139 4.139 14 C -0.131 4.131 15 C 0.108 3.892 16 N -0.608 5.608 17 C 0.511 3.489 18 O -0.520 6.520 19 C 0.037 3.963 20 N -0.515 5.515 21 C 0.034 3.966 22 C 0.120 3.880 23 N -0.610 5.610 24 C 0.080 3.920 25 C 0.526 3.474 26 O -0.548 6.548 27 C 0.035 3.965 28 C 0.100 3.900 29 H 0.017 0.983 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.136 0.864 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 -27.614 2.004 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.325 5.325 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.168 4.168 6 N -0.541 5.541 7 Si 0.716 3.284 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.195 1.195 11 C 0.060 3.940 12 H 0.093 0.907 13 C -0.178 4.178 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.342 5.342 17 C 0.297 3.703 18 O -0.396 6.396 19 C -0.094 4.094 20 N -0.241 5.241 21 C -0.094 4.094 22 C -0.003 4.003 23 N -0.344 5.344 24 C -0.062 4.062 25 C 0.314 3.686 26 O -0.425 6.425 27 C -0.095 4.095 28 C -0.023 4.023 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.154 0.846 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.626 -26.533 3.174 27.532 hybrid contribution -1.240 -0.678 -1.286 1.911 sum 5.385 -27.212 1.888 27.803 Atomic orbital electron populations 1.21341 0.84978 0.99006 0.98295 1.44041 1.00464 1.01586 1.86428 1.18822 1.08056 0.86312 1.26500 0.90157 1.25433 0.98276 0.95172 0.97916 1.69881 1.46187 0.97646 1.40369 0.86830 0.80392 0.77528 0.83603 1.21617 1.23202 1.19482 1.20810 0.97068 0.85553 0.90553 0.90663 1.22154 0.99441 0.95210 1.01039 1.21911 1.01296 0.97149 0.96667 1.21746 1.01304 0.93417 0.85045 1.48178 1.49152 1.19251 1.17661 1.20314 0.78866 0.88001 0.83102 1.90708 1.60296 1.57881 1.30691 1.22101 0.97702 0.95580 0.93983 1.62147 1.23870 1.35727 1.02313 1.22560 0.96126 0.91092 0.99632 1.21528 0.95056 1.02059 0.81677 1.47310 1.17148 1.61991 1.07926 1.21682 0.97584 0.99879 0.87076 1.20072 0.81214 0.76444 0.90883 1.90729 1.69545 1.54792 1.27472 1.22535 0.94246 1.05079 0.87624 1.22415 0.96426 0.81433 1.02035 0.96512 0.93658 0.95097 0.92690 0.91389 0.92509 0.91402 0.91206 0.90492 0.91441 0.87174 0.91586 0.93480 0.88185 0.90095 0.90531 0.92495 0.90395 0.91283 0.84642 0.91498 0.92109 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.32 8.45 59.85 0.51 2.83 16 2 N -0.60 -14.05 2.42 -173.08 -0.42 -14.46 16 3 C -0.27 -7.52 9.85 -15.06 -0.15 -7.66 16 4 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 5 C 0.03 0.93 5.31 -17.43 -0.09 0.84 16 6 N -0.90 -27.67 13.97 55.49 0.78 -26.89 16 7 Si 0.89 22.11 24.94 -169.99 -4.24 17.87 16 8 H -0.29 -7.03 6.67 56.52 0.38 -6.65 16 9 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.17 3.19 2.76 -67.58 -0.19 3.01 16 12 H 0.08 1.56 7.89 -51.93 -0.41 1.15 16 13 C -0.14 -2.16 5.11 -26.69 -0.14 -2.30 16 14 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 15 C 0.11 1.02 6.34 -3.71 -0.02 1.00 16 16 N -0.61 -8.11 2.97 -172.50 -0.51 -8.62 16 17 C 0.51 7.03 7.46 -10.98 -0.08 6.95 16 18 O -0.52 -9.56 13.72 5.56 0.08 -9.48 16 19 C 0.04 0.33 3.79 -4.97 -0.02 0.31 16 20 N -0.51 -5.14 4.47 -237.55 -1.06 -6.21 16 21 C 0.03 0.21 5.59 -3.68 -0.02 0.19 16 22 C 0.12 0.76 6.62 -4.32 -0.03 0.73 16 23 N -0.61 -5.96 3.22 -182.52 -0.59 -6.55 16 24 C 0.08 0.64 10.29 59.85 0.62 1.26 16 25 C 0.53 6.90 7.56 -11.74 -0.09 6.82 16 26 O -0.55 -9.23 16.32 5.55 0.09 -9.14 16 27 C 0.04 0.42 5.15 -5.19 -0.03 0.39 16 28 C 0.10 1.71 5.81 -3.48 -0.02 1.69 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 1.06 3.08 -51.93 -0.16 0.90 16 31 H 0.03 0.57 6.46 -51.93 -0.34 0.23 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.86 6.73 -51.93 -0.35 0.51 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 0.73 7.49 -51.93 -0.39 0.34 16 40 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 41 H 0.05 0.24 8.08 -51.93 -0.42 -0.17 16 42 H 0.10 0.38 7.91 -51.93 -0.41 -0.03 16 43 H 0.08 0.28 7.98 -51.93 -0.41 -0.13 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.73 7.26 -51.93 -0.38 0.35 16 47 H 0.07 0.33 7.92 -51.92 -0.41 -0.08 16 48 H 0.14 2.06 6.01 -51.93 -0.31 1.75 16 49 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 50 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 51 H 0.09 1.90 7.00 -51.93 -0.36 1.53 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -36.62 385.61 -8.40 -45.01 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.42 Total: -1.78 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 0.09 Total: 14.45 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -1.80 Total: -62.74 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.17 Total: -18.63 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.24 Total: 17.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.62 -8.40 -45.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027471426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.726 kcal (2) G-P(sol) polarization free energy of solvation -36.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds