Wall clock time and date at job start Tue Mar 31 2020 22:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36935 * 119.99669 * 2 1 4 4 H 1.07999 * 119.99965 * 144.56032 * 3 2 1 5 5 C 1.38814 * 119.99845 * 324.56286 * 3 2 1 6 6 N 1.31622 * 119.99476 * 157.65627 * 5 3 2 7 7 Si 1.86799 * 120.00254 * 337.65730 * 5 3 2 8 8 H 1.48498 * 109.46934 * 95.56085 * 7 5 3 9 9 H 1.48494 * 109.46876 * 215.56379 * 7 5 3 10 10 H 1.48500 * 109.46648 * 335.56037 * 7 5 3 11 11 C 1.46499 * 119.99957 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49253 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.49796 * 60.00367 * 11 2 1 14 14 C 1.53042 * 109.53553 * 178.64912 * 13 11 2 15 15 C 1.53190 * 109.31166 * 61.36695 * 14 13 11 16 16 N 1.46925 * 108.77556 * 305.35960 * 15 14 13 17 17 C 1.34774 * 120.63226 * 233.58657 * 16 15 14 18 18 O 1.21278 * 120.00009 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99936 * 0.02562 * 17 16 15 20 20 N 1.46904 * 109.47025 * 180.02562 * 19 17 16 21 21 C 1.47185 * 111.00090 * 188.93732 * 20 19 17 22 22 C 1.52974 * 108.73362 * 167.63236 * 21 20 19 23 23 N 1.46010 * 110.04118 * 50.28863 * 22 21 20 24 24 C 1.46502 * 118.53716 * 161.84111 * 23 22 21 25 25 C 1.33573 * 122.88638 * 341.74739 * 23 22 21 26 26 O 1.21284 * 118.51669 * 181.76858 * 25 23 22 27 27 C 1.46897 * 111.00077 * 66.04267 * 20 19 17 28 28 C 1.46930 * 118.73514 * 53.86732 * 16 15 14 29 29 H 1.08997 * 109.47494 * 268.02741 * 1 2 3 30 30 H 1.08998 * 109.47175 * 28.03869 * 1 2 3 31 31 H 1.09003 * 109.46535 * 148.02937 * 1 2 3 32 32 H 0.97005 * 119.99762 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.45891 * 58.62799 * 13 11 2 34 34 H 1.08998 * 109.45670 * 298.66868 * 13 11 2 35 35 H 1.09000 * 109.49505 * 301.41452 * 14 13 11 36 36 H 1.08999 * 109.49221 * 181.31525 * 14 13 11 37 37 H 1.08998 * 109.58155 * 185.57573 * 15 14 13 38 38 H 1.09002 * 109.70437 * 65.22249 * 15 14 13 39 39 H 1.08997 * 109.47097 * 59.99924 * 19 17 16 40 40 H 1.09003 * 109.46933 * 299.99221 * 19 17 16 41 41 H 1.09007 * 109.58941 * 287.40728 * 21 20 19 42 42 H 1.09004 * 109.59470 * 47.85123 * 21 20 19 43 43 H 1.08997 * 109.37886 * 170.46694 * 22 21 20 44 44 H 1.09007 * 109.37350 * 290.11581 * 22 21 20 45 45 H 1.08999 * 109.47101 * 89.99725 * 24 23 22 46 46 H 1.08992 * 109.47405 * 210.00221 * 24 23 22 47 47 H 1.09008 * 109.46964 * 330.00609 * 24 23 22 48 48 H 1.08997 * 109.38824 * 293.81922 * 27 20 19 49 49 H 1.08996 * 109.38671 * 53.61485 * 27 20 19 50 50 H 1.09001 * 109.58793 * 65.92560 * 28 16 15 51 51 H 1.09006 * 109.58429 * 186.35177 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0796 1.2726 0.5423 5 6 1.6484 2.2767 -0.6970 6 7 2.0216 3.4954 -0.3687 7 14 0.4441 2.0149 -2.1008 8 1 -0.9444 2.1638 -1.5961 9 1 0.6955 3.0219 -3.1628 10 1 0.6243 0.6508 -2.6595 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6184 -3.3829 -1.2659 15 6 2.2511 -4.2123 -0.0314 16 7 2.4667 -3.3937 1.1695 17 6 3.2376 -3.8449 2.1788 18 8 3.4075 -3.1598 3.1650 19 6 3.8884 -5.2007 2.0818 20 7 4.6688 -5.4574 3.2997 21 6 5.4873 -6.6722 3.1554 22 6 6.4967 -6.7238 4.3036 23 7 5.8144 -6.5241 5.5790 24 6 6.4984 -6.9291 6.8096 25 6 4.5951 -5.9868 5.6729 26 8 4.1159 -5.8275 6.7756 27 6 3.7916 -5.5739 4.4722 28 6 1.8209 -2.0765 1.2519 29 1 -0.3634 -0.0354 1.0270 30 1 -0.3633 0.9070 -0.4831 31 1 -0.3632 -0.8718 -0.5442 32 1 1.6716 4.2577 -0.8560 33 1 2.0694 -1.4911 -2.1385 34 1 0.7608 -2.2919 -1.2365 35 1 3.6861 -3.1642 -1.2528 36 1 2.3723 -3.9439 -2.1674 37 1 2.8820 -5.0999 0.0133 38 1 1.2042 -4.5106 -0.0872 39 1 4.5486 -5.2256 1.2148 40 1 3.1196 -5.9660 1.9754 41 1 4.8451 -7.5522 3.1933 42 1 6.0175 -6.6448 2.2034 43 1 6.9918 -7.6948 4.3066 44 1 7.2418 -5.9402 4.1655 45 1 7.0849 -6.0933 7.1912 46 1 5.7603 -7.2253 7.5549 47 1 7.1590 -7.7700 6.5982 48 1 3.3185 -4.6115 4.6671 49 1 3.0233 -6.3217 4.2764 50 1 0.7392 -2.2021 1.2973 51 1 2.1681 -1.5545 2.1436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027471426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:02 Heat of formation + Delta-G solvation = -39.828579 kcal Electronic energy + Delta-G solvation = -30725.594248 eV Core-core repulsion = 26660.509122 eV Total energy + Delta-G solvation = -4065.085126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75470 -41.02856 -39.17079 -38.03910 -36.85219 -36.24283 -34.11843 -33.06745 -31.63781 -30.90307 -30.24558 -28.11273 -27.73625 -26.20046 -25.72483 -25.04687 -23.53384 -23.04239 -21.05419 -19.86974 -19.70882 -18.92294 -18.50672 -17.81428 -17.68877 -17.44710 -17.18386 -16.58650 -16.46309 -16.03360 -15.67125 -15.52008 -15.27936 -15.18786 -15.08413 -14.66644 -14.44459 -14.29411 -14.13446 -14.05393 -13.88583 -13.65083 -13.49039 -13.38129 -13.25815 -12.93124 -12.86351 -12.59558 -12.54836 -12.24367 -12.15648 -12.06843 -11.83359 -11.75199 -11.65559 -11.30939 -11.08017 -10.78704 -10.63573 -9.80032 -9.68244 -9.44348 -8.79184 -8.22594 -5.60701 1.29949 1.40384 1.44622 1.53354 1.67458 1.89622 2.01263 2.40368 2.71468 3.02854 3.33565 3.46581 3.59022 3.81424 3.97129 4.02779 4.07593 4.13049 4.21911 4.25056 4.27632 4.36808 4.38567 4.41526 4.50136 4.53294 4.61515 4.63069 4.65052 4.69942 4.76773 4.81868 4.88893 4.89406 4.90815 4.97837 5.00899 5.05785 5.19461 5.34875 5.44428 5.50980 5.51469 5.65091 5.87498 5.89262 6.12459 6.32093 6.53724 6.93290 7.01451 7.28065 7.59106 7.98128 8.97709 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.002475 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.196063 B =11312.027225 C =11909.947579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.617 5.617 3 C -0.263 4.263 4 H 0.029 0.971 5 C -0.029 4.029 6 N -0.954 5.954 7 Si 0.962 3.038 8 H -0.275 1.275 9 H -0.310 1.310 10 H -0.247 1.247 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.131 4.131 14 C -0.124 4.124 15 C 0.104 3.896 16 N -0.608 5.608 17 C 0.499 3.501 18 O -0.581 6.581 19 C 0.048 3.952 20 N -0.539 5.539 21 C 0.035 3.965 22 C 0.110 3.890 23 N -0.605 5.605 24 C 0.076 3.924 25 C 0.514 3.486 26 O -0.603 6.603 27 C 0.044 3.956 28 C 0.115 3.885 29 H 0.019 0.981 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.147 0.853 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.134 0.866 43 H 0.121 0.879 44 H 0.073 0.927 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -32.964 -1.289 33.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.341 5.341 3 C -0.393 4.393 4 H 0.047 0.953 5 C -0.225 4.225 6 N -0.598 5.598 7 Si 0.790 3.210 8 H -0.202 1.202 9 H -0.239 1.239 10 H -0.171 1.171 11 C 0.060 3.940 12 H 0.060 0.940 13 C -0.171 4.171 14 C -0.162 4.162 15 C -0.017 4.017 16 N -0.342 5.342 17 C 0.288 3.712 18 O -0.460 6.460 19 C -0.082 4.082 20 N -0.266 5.266 21 C -0.092 4.092 22 C -0.011 4.011 23 N -0.337 5.337 24 C -0.066 4.066 25 C 0.303 3.697 26 O -0.485 6.485 27 C -0.086 4.086 28 C -0.011 4.011 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.164 0.836 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.151 0.849 43 H 0.139 0.861 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.128 0.872 48 H 0.110 0.890 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.408 -31.990 -0.177 32.626 hybrid contribution -1.016 0.980 -0.139 1.419 sum 5.392 -31.010 -0.316 31.477 Atomic orbital electron populations 1.21415 0.83506 0.99853 0.98938 1.44129 1.01500 1.01592 1.86919 1.18629 1.06676 0.88676 1.25334 0.95290 1.26166 1.01368 0.94488 1.00498 1.70036 1.49062 0.98746 1.41943 0.85606 0.78145 0.78101 0.79166 1.20233 1.23927 1.17100 1.20889 0.94823 0.84616 0.93624 0.93996 1.22015 1.01030 0.96804 0.97221 1.21899 1.00139 0.94985 0.99210 1.22136 1.03754 0.93743 0.82023 1.48287 1.48625 1.17899 1.19343 1.21445 0.78085 0.89651 0.81972 1.90704 1.62209 1.60010 1.33122 1.22181 0.99001 0.92485 0.94522 1.62041 1.24043 1.38540 1.01932 1.22753 0.95748 0.89820 1.00846 1.21908 0.95037 1.04075 0.80099 1.47500 1.16088 1.60131 1.09959 1.21816 0.97351 1.01069 0.86334 1.20416 0.82390 0.76417 0.90511 1.90690 1.71159 1.57293 1.29351 1.22232 0.94812 1.03186 0.88405 1.21882 0.96951 0.83426 0.98800 0.96307 0.95382 0.91066 0.92733 0.93447 0.91152 0.91937 0.87396 0.85736 0.89443 0.83589 0.87820 0.91609 0.84851 0.86117 0.90911 0.93114 0.92365 0.87161 0.89005 0.89600 0.91159 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.46 8.45 127.77 1.08 5.54 16 2 N -0.62 -29.45 2.42 -701.51 -1.69 -31.15 16 3 C -0.26 -15.60 9.85 84.03 0.83 -14.78 16 4 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 5 C -0.03 -1.76 5.31 84.86 0.45 -1.31 16 6 N -0.95 -61.64 13.97 21.65 0.30 -61.34 16 7 Si 0.96 46.40 24.94 68.60 1.71 48.11 16 8 H -0.27 -12.62 6.67 99.48 0.66 -11.95 16 9 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 10 H -0.25 -10.91 7.11 99.48 0.71 -10.21 16 11 C 0.17 6.44 2.76 45.22 0.12 6.56 16 12 H 0.04 1.85 7.89 -2.39 -0.02 1.83 16 13 C -0.13 -3.73 5.11 30.62 0.16 -3.57 16 14 C -0.12 -2.12 6.08 30.67 0.19 -1.93 16 15 C 0.10 1.41 6.34 86.36 0.55 1.95 16 16 N -0.61 -15.08 2.97 -818.05 -2.43 -17.50 16 17 C 0.50 13.22 7.46 87.66 0.65 13.88 16 18 O -0.58 -22.65 13.72 -3.02 -0.04 -22.69 16 19 C 0.05 0.64 3.79 85.56 0.32 0.97 16 20 N -0.54 -9.37 4.47 -905.49 -4.05 -13.42 16 21 C 0.04 0.26 5.59 86.24 0.48 0.74 16 22 C 0.11 0.99 6.62 86.46 0.57 1.56 16 23 N -0.61 -11.04 3.22 -850.42 -2.74 -13.78 16 24 C 0.08 1.14 10.29 127.77 1.31 2.46 16 25 C 0.51 13.76 7.56 87.70 0.66 14.43 16 26 O -0.60 -21.71 16.32 -3.04 -0.05 -21.76 16 27 C 0.04 1.04 5.15 85.42 0.44 1.48 16 28 C 0.11 3.97 5.81 86.51 0.50 4.47 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.03 1.27 3.08 -2.39 -0.01 1.27 16 31 H 0.07 2.39 6.46 -2.39 -0.02 2.37 16 32 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.81 6.73 -2.39 -0.02 1.80 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 0.58 5.93 -2.39 -0.01 0.57 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.15 0.96 7.49 -2.39 -0.02 0.95 16 40 H 0.10 0.69 7.85 -2.39 -0.02 0.67 16 41 H 0.07 0.30 8.08 -2.38 -0.02 0.28 16 42 H 0.13 0.14 7.91 -2.38 -0.02 0.12 16 43 H 0.12 0.19 7.98 -2.39 -0.02 0.17 16 44 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 1.12 7.26 -2.39 -0.02 1.10 16 47 H 0.11 0.71 7.92 -2.38 -0.02 0.69 16 48 H 0.09 3.02 6.01 -2.39 -0.01 3.01 16 49 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 50 H 0.07 2.27 7.53 -2.39 -0.02 2.25 16 51 H 0.05 2.02 7.00 -2.38 -0.02 2.00 16 Total: -1.00 -93.08 385.61 0.22 -92.87 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.88 Total: 8.20 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 8.33 Total: 32.45 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -10.60 Total: -137.18 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.09 Total: -44.45 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.71 Total: 48.11 kcal Total: -93.08 0.22 -92.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027471426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.038 kcal (2) G-P(sol) polarization free energy of solvation -93.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds