Wall clock time and date at job start Tue Mar 31 2020 21:42:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.46904 * 2 1
4 4 C 1.34772 * 119.99997 * 273.98256 * 3 2 1
5 5 O 1.21283 * 120.00079 * 4.35982 * 4 3 2
6 6 C 1.50697 * 120.00190 * 184.35185 * 4 3 2
7 7 H 1.09000 * 109.49788 * 319.89550 * 6 4 3
8 8 C 1.53045 * 109.49931 * 199.83238 * 6 4 3
9 9 C 1.53043 * 109.53709 * 178.68249 * 8 6 4
10 10 C 1.53186 * 109.31353 * 61.36514 * 9 8 6
11 11 N 1.46924 * 108.77748 * 305.36379 * 10 9 8
12 12 C 1.34780 * 120.63336 * 233.58998 * 11 10 9
13 13 N 1.34774 * 119.99688 * 5.13935 * 12 11 10
14 14 O 1.21585 * 120.00014 * 185.14583 * 12 11 10
15 15 C 1.46930 * 118.73840 * 53.60652 * 11 10 9
16 16 C 1.46504 * 120.00227 * 93.99126 * 3 2 1
17 17 H 1.08992 * 110.64140 * 176.69695 * 16 3 2
18 18 C 1.55155 * 110.71725 * 300.03625 * 16 3 2
19 19 C 1.55126 * 101.48675 * 82.69394 * 18 16 3
20 20 N 1.47422 * 104.72599 * 37.29701 * 19 18 16
21 21 C 1.36935 * 125.65378 * 155.81381 * 20 19 18
22 22 H 1.07998 * 120.00171 * 191.09770 * 21 20 19
23 23 C 1.38811 * 119.99574 * 11.10581 * 21 20 19
24 24 N 1.31620 * 120.00580 * 33.36333 * 23 21 20
25 25 Si 1.86807 * 119.99739 * 213.36829 * 23 21 20
26 26 H 1.48498 * 109.47250 * 179.97438 * 25 23 21
27 27 H 1.48493 * 109.47041 * 300.00008 * 25 23 21
28 28 H 1.48497 * 109.46776 * 59.99674 * 25 23 21
29 29 C 1.47030 * 108.69973 * 335.55122 * 20 19 18
30 30 H 1.09008 * 109.47290 * 185.65868 * 1 2 3
31 31 H 1.09007 * 109.46974 * 305.65259 * 1 2 3
32 32 H 1.08992 * 109.47471 * 65.65478 * 1 2 3
33 33 H 1.09004 * 109.47196 * 239.99829 * 2 1 3
34 34 H 1.09004 * 109.47030 * 119.99990 * 2 1 3
35 35 H 1.08994 * 109.45768 * 298.70308 * 8 6 4
36 36 H 1.08998 * 109.45913 * 58.68053 * 8 6 4
37 37 H 1.09003 * 109.49493 * 181.31380 * 9 8 6
38 38 H 1.09003 * 109.49902 * 301.37946 * 9 8 6
39 39 H 1.09002 * 109.58899 * 65.15110 * 10 9 8
40 40 H 1.08995 * 109.58874 * 185.57668 * 10 9 8
41 41 H 0.96998 * 119.99957 * 5.06864 * 13 12 11
42 42 H 0.96996 * 119.99623 * 185.05947 * 13 12 11
43 43 H 1.08997 * 109.58609 * 186.60519 * 15 11 10
44 44 H 1.09003 * 109.58594 * 66.18159 * 15 11 10
45 45 H 1.09000 * 111.00183 * 200.93433 * 18 16 3
46 46 H 1.08993 * 111.00652 * 324.78442 * 18 16 3
47 47 H 1.09000 * 110.49905 * 278.45013 * 19 18 16
48 48 H 1.09008 * 110.33959 * 156.05794 * 19 18 16
49 49 H 0.97003 * 119.99647 * 359.58174 * 24 23 21
50 50 H 1.08999 * 109.88118 * 120.69932 * 29 20 19
51 51 H 1.08996 * 109.88064 * 241.71575 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3812 0.0000
4 6 2.1664 2.0436 -1.1643
5 8 1.8214 1.5251 -2.2051
6 6 2.7606 3.4284 -1.1731
7 1 2.3786 3.9936 -0.3230
8 6 2.3783 4.1401 -2.4730
9 6 2.9537 5.5582 -2.4684
10 6 4.4818 5.4846 -2.3889
11 7 4.8562 4.6778 -1.2195
12 6 5.7064 5.1638 -0.2935
13 7 6.1407 6.4368 -0.3797
14 8 6.0817 4.4539 0.6194
15 6 4.2865 3.3307 -1.0790
16 6 2.3457 2.0425 1.2657
17 1 2.7473 3.0395 1.0856
18 6 1.1009 2.1064 2.1896
19 6 1.1241 0.6969 2.8372
20 7 2.5539 0.4025 3.0427
21 6 3.0646 -0.4674 3.9688
22 1 4.1263 -0.4840 4.1662
23 6 2.2177 -1.3278 4.6537
24 7 1.1475 -1.8102 4.0585
25 14 2.5969 -1.8013 6.4206
26 1 1.5467 -2.7235 6.9223
27 1 3.9183 -2.4761 6.4795
28 1 2.6269 -0.5799 7.2647
29 6 3.3405 1.1927 2.0842
30 1 -0.3634 -1.0227 0.1013
31 1 -0.3633 0.5990 0.8351
32 1 -0.3634 0.4236 -0.9362
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 2.7812 3.5874 -3.3216
36 1 1.2924 4.1894 -2.5541
37 1 2.6614 6.0723 -3.3840
38 1 2.5700 6.1038 -1.6064
39 1 4.8729 5.0198 -3.2940
40 1 4.8911 6.4895 -2.2857
41 1 5.7855 7.0251 -1.0642
42 1 6.8082 6.7646 0.2430
43 1 4.5670 2.9145 -0.1114
44 1 4.6616 2.6902 -1.8772
45 1 1.2123 2.8875 2.9417
46 1 0.1903 2.2526 1.6088
47 1 0.6778 -0.0382 2.1675
48 1 0.5984 0.7100 3.7921
49 1 0.9473 -1.5595 3.1430
50 1 4.0313 1.8441 2.6196
51 1 3.8954 0.5276 1.4227
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033892027.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:42:44
Heat of formation + Delta-G solvation = -49.176317 kcal
Electronic energy + Delta-G solvation = -32178.447552 eV
Core-core repulsion = 28112.957078 eV
Total energy + Delta-G solvation = -4065.490474 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.04988 -41.05734 -39.53497 -38.12784 -36.26509 -35.13041 -34.13298 -33.41059
-32.99712 -31.44441 -30.98938 -28.79075 -26.47494 -26.34770 -25.72223 -23.84935
-22.70796 -22.38390 -22.05269 -20.66344 -19.75635 -19.63722 -19.32401 -18.61260
-17.91665 -17.23543 -16.62087 -16.48693 -16.31250 -15.87307 -15.77344 -15.62510
-15.39922 -15.22621 -15.05231 -14.81749 -14.45134 -14.27965 -14.15506 -13.84897
-13.71838 -13.58511 -13.45789 -13.08868 -12.70369 -12.57380 -12.48490 -12.41605
-12.23232 -12.09280 -12.00132 -11.91550 -11.87459 -11.77764 -11.64675 -11.56617
-11.33992 -10.81895 -10.70698 -10.39301 -9.81363 -9.65940 -8.97093 -8.41630
-5.24450 1.35212 1.57155 1.64644 1.73883 1.84096 1.92108 2.12318
2.62376 3.15806 3.19806 3.35193 3.46321 3.62601 3.65798 3.74811
3.79484 3.92033 4.02144 4.04066 4.14515 4.18616 4.29533 4.38375
4.45215 4.46975 4.49540 4.53929 4.67803 4.71822 4.76672 4.82016
4.84620 4.88948 4.91253 4.99407 5.04089 5.09630 5.13972 5.16924
5.35479 5.37457 5.40725 5.46130 5.68638 5.81309 6.01543 6.33395
6.36577 6.90786 6.91280 7.03789 7.61022 7.73079 8.30248 8.99483
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.014138 B = 0.003678 C = 0.003078
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1979.995346 B = 7610.222290 C = 9094.370615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.110 3.890
3 N -0.590 5.590
4 C 0.520 3.480
5 O -0.567 6.567
6 C -0.114 4.114
7 H 0.107 0.893
8 C -0.097 4.097
9 C -0.126 4.126
10 C 0.103 3.897
11 N -0.623 5.623
12 C 0.700 3.300
13 N -0.845 5.845
14 O -0.642 6.642
15 C 0.145 3.855
16 C 0.138 3.862
17 H 0.124 0.876
18 C -0.134 4.134
19 C 0.133 3.867
20 N -0.618 5.618
21 C -0.357 4.357
22 H 0.054 0.946
23 C -0.069 4.069
24 N -0.935 5.935
25 Si 1.113 2.887
26 H -0.290 1.290
27 H -0.279 1.279
28 H -0.283 1.283
29 C 0.129 3.871
30 H 0.063 0.937
31 H 0.064 0.936
32 H 0.059 0.941
33 H 0.064 0.936
34 H 0.068 0.932
35 H 0.067 0.933
36 H 0.069 0.931
37 H 0.109 0.891
38 H 0.075 0.925
39 H 0.081 0.919
40 H 0.112 0.888
41 H 0.413 0.587
42 H 0.420 0.580
43 H 0.073 0.927
44 H 0.068 0.932
45 H 0.090 0.910
46 H 0.093 0.907
47 H 0.038 0.962
48 H 0.016 0.984
49 H 0.259 0.741
50 H 0.033 0.967
51 H 0.012 0.988
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.203 22.375 -15.953 27.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.013 4.013
3 N -0.321 5.321
4 C 0.309 3.691
5 O -0.446 6.446
6 C -0.136 4.136
7 H 0.125 0.875
8 C -0.135 4.135
9 C -0.164 4.164
10 C -0.018 4.018
11 N -0.360 5.360
12 C 0.400 3.600
13 N -0.417 5.417
14 O -0.524 6.524
15 C 0.020 3.980
16 C 0.034 3.966
17 H 0.142 0.858
18 C -0.173 4.173
19 C 0.009 3.991
20 N -0.345 5.345
21 C -0.485 4.485
22 H 0.072 0.928
23 C -0.266 4.266
24 N -0.578 5.578
25 Si 0.938 3.062
26 H -0.216 1.216
27 H -0.205 1.205
28 H -0.210 1.210
29 C 0.003 3.997
30 H 0.082 0.918
31 H 0.083 0.917
32 H 0.078 0.922
33 H 0.083 0.917
34 H 0.086 0.914
35 H 0.086 0.914
36 H 0.088 0.912
37 H 0.127 0.873
38 H 0.093 0.907
39 H 0.100 0.900
40 H 0.130 0.870
41 H 0.247 0.753
42 H 0.253 0.747
43 H 0.092 0.908
44 H 0.086 0.914
45 H 0.108 0.892
46 H 0.112 0.888
47 H 0.056 0.944
48 H 0.034 0.966
49 H 0.070 0.930
50 H 0.051 0.949
51 H 0.030 0.970
Dipole moment (debyes) X Y Z Total
from point charges 2.730 20.574 -14.642 25.400
hybrid contribution 0.759 0.395 -1.007 1.321
sum 3.488 20.969 -15.649 26.396
Atomic orbital electron populations
1.22135 0.94694 1.02500 1.02014 1.21406 0.95480 0.82548 1.01820
1.48045 1.64131 1.13783 1.06122 1.20932 0.77693 0.88114 0.82354
1.90650 1.51707 1.69957 1.32298 1.21746 0.96148 0.92515 1.03168
0.87509 1.21363 1.01598 0.96184 0.94381 1.21944 0.94252 0.95474
1.04719 1.22042 0.96146 0.96297 0.87324 1.47185 1.47712 1.16630
1.24482 1.16128 0.79243 0.83114 0.81518 1.42912 1.48233 1.10228
1.40293 1.90995 1.63569 1.60155 1.37679 1.21111 0.90221 0.83785
1.02895 1.22171 0.95362 0.96307 0.82798 0.85835 1.23204 0.97931
0.97516 0.98647 1.21891 0.85651 0.94450 0.97151 1.44756 1.02007
1.48408 1.39372 1.19866 0.94263 1.17846 1.16515 0.92826 1.26922
0.96521 0.95327 1.07858 1.70950 1.32810 1.39253 1.14754 0.82858
0.75566 0.75958 0.71830 1.21570 1.20525 1.20962 1.21660 0.93873
0.93353 0.90828 0.91831 0.91701 0.92175 0.91713 0.91396 0.91389
0.91193 0.87277 0.90665 0.90044 0.86998 0.75312 0.74698 0.90809
0.91415 0.89169 0.88848 0.94415 0.96563 0.93031 0.94902 0.97021
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.15 9.09 71.98 0.65 -4.50 16
2 C 0.11 4.08 4.99 86.38 0.43 4.51 16
3 N -0.59 -19.32 2.45 -791.26 -1.94 -21.25 16
4 C 0.52 15.53 6.81 87.66 0.60 16.12 16
5 O -0.57 -19.84 15.75 -3.04 -0.05 -19.89 16
6 C -0.11 -2.46 1.80 -11.46 -0.02 -2.48 16
7 H 0.11 2.14 6.49 -2.39 -0.02 2.12 16
8 C -0.10 -1.57 4.61 30.62 0.14 -1.43 16
9 C -0.13 -1.02 6.08 30.67 0.19 -0.84 16
10 C 0.10 0.86 6.43 86.36 0.56 1.42 16
11 N -0.62 -11.18 2.97 -836.92 -2.49 -13.66 16
12 C 0.70 15.46 8.57 179.05 1.53 16.99 16
13 N -0.84 -9.44 8.77 -184.75 -1.62 -11.06 16
14 O -0.64 -21.95 16.62 -3.98 -0.07 -22.02 16
15 C 0.14 3.42 5.50 86.36 0.48 3.90 16
16 C 0.14 4.55 3.00 46.18 0.14 4.69 16
17 H 0.12 3.46 4.97 -2.39 -0.01 3.44 16
18 C -0.13 -4.51 6.15 32.06 0.20 -4.31 16
19 C 0.13 6.07 4.11 86.93 0.36 6.43 16
20 N -0.62 -31.59 2.84 -691.53 -1.96 -33.55 16
21 C -0.36 -20.76 9.99 84.03 0.84 -19.92 16
22 H 0.05 3.19 8.01 -2.91 -0.02 3.16 16
23 C -0.07 -4.01 4.97 84.86 0.42 -3.59 16
24 N -0.94 -57.10 13.00 21.65 0.28 -56.82 16
25 Si 1.11 52.45 30.03 68.60 2.06 54.51 16
26 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16
27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
28 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
29 C 0.13 5.57 6.13 86.73 0.53 6.10 16
30 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16
31 H 0.06 2.14 4.71 -2.38 -0.01 2.13 16
32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
33 H 0.06 2.43 7.61 -2.38 -0.02 2.41 16
34 H 0.07 3.03 5.10 -2.38 -0.01 3.02 16
35 H 0.07 1.25 7.95 -2.39 -0.02 1.23 16
36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
37 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16
38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16
39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
40 H 0.11 0.18 5.58 -2.39 -0.01 0.17 16
41 H 0.41 1.41 6.32 -92.71 -0.59 0.83 16
42 H 0.42 4.13 8.93 -92.71 -0.83 3.31 16
43 H 0.07 2.23 6.15 -2.39 -0.01 2.21 16
44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16
45 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16
46 H 0.09 2.73 6.80 -2.39 -0.02 2.71 16
47 H 0.04 1.78 2.87 -2.39 -0.01 1.78 16
48 H 0.02 0.83 7.76 -2.38 -0.02 0.81 16
49 H 0.26 15.79 6.00 -92.71 -0.56 15.23 16
50 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16
51 H 0.01 0.55 7.89 -2.39 -0.02 0.53 16
Total: -1.00 -80.82 378.41 1.04 -79.78
By element:
Atomic # 1 Polarization: 21.09 SS G_CDS: -0.22 Total: 20.87 kcal
Atomic # 6 Polarization: 16.05 SS G_CDS: 7.04 Total: 23.09 kcal
Atomic # 7 Polarization: -128.63 SS G_CDS: -7.72 Total: -136.35 kcal
Atomic # 8 Polarization: -41.79 SS G_CDS: -0.11 Total: -41.90 kcal
Atomic # 14 Polarization: 52.45 SS G_CDS: 2.06 Total: 54.51 kcal
Total: -80.82 1.04 -79.78 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033892027.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.604 kcal
(2) G-P(sol) polarization free energy of solvation -80.820 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.216 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.780 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.176 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds