Wall clock time and date at job start Tue Mar 31 2020 21:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46491 * 109.47581 * 2 1 4 4 C 1.34774 * 120.00303 * 302.39142 * 3 2 1 5 5 O 1.21276 * 120.00394 * 189.30118 * 4 3 2 6 6 C 1.50706 * 119.99746 * 9.29969 * 4 3 2 7 7 C 1.53036 * 109.46238 * 290.21227 * 6 4 3 8 8 C 1.53188 * 109.31204 * 178.61457 * 7 6 4 9 9 N 1.46928 * 108.78048 * 54.63537 * 8 7 6 10 10 C 1.34769 * 120.63207 * 126.36732 * 9 8 7 11 11 N 1.34773 * 120.00409 * 5.21926 * 10 9 8 12 12 O 1.21595 * 120.00055 * 185.22218 * 10 9 8 13 13 C 1.46929 * 118.73261 * 306.39140 * 9 8 7 14 14 C 1.53047 * 109.45983 * 170.14249 * 6 4 3 15 15 C 1.46503 * 120.00055 * 122.38826 * 3 2 1 16 16 H 1.09000 * 110.63990 * 173.77395 * 15 3 2 17 17 C 1.55153 * 110.72023 * 296.92104 * 15 3 2 18 18 C 1.54912 * 101.61669 * 154.02310 * 17 15 3 19 19 N 1.47471 * 104.80985 * 323.03988 * 18 17 15 20 20 C 1.36930 * 125.62879 * 204.05044 * 19 18 17 21 21 H 1.08000 * 120.00158 * 180.02562 * 20 19 18 22 22 C 1.38818 * 120.00090 * 0.02650 * 20 19 18 23 23 N 1.31623 * 119.99927 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00039 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47058 * 59.99996 * 24 22 20 26 26 H 1.48501 * 109.47081 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47100 * 299.99787 * 24 22 20 28 28 C 1.47018 * 108.72085 * 24.07154 * 19 18 17 29 29 H 1.09005 * 109.47099 * 95.31403 * 1 2 3 30 30 H 1.08997 * 109.47652 * 215.31584 * 1 2 3 31 31 H 1.09003 * 109.46869 * 335.32326 * 1 2 3 32 32 H 1.08999 * 109.46642 * 239.99507 * 2 1 3 33 33 H 1.09002 * 109.46605 * 120.00708 * 2 1 3 34 34 H 1.09006 * 109.45701 * 50.17542 * 6 4 3 35 35 H 1.09002 * 109.49560 * 298.56522 * 7 6 4 36 36 H 1.09001 * 109.50086 * 58.66028 * 7 6 4 37 37 H 1.09002 * 109.58901 * 294.84594 * 8 7 6 38 38 H 1.09001 * 109.58918 * 174.42492 * 8 7 6 39 39 H 0.97003 * 119.99676 * 4.80974 * 11 10 9 40 40 H 0.96997 * 120.00572 * 184.80920 * 11 10 9 41 41 H 1.08991 * 109.59086 * 293.81604 * 13 9 8 42 42 H 1.09003 * 109.58370 * 173.39288 * 13 9 8 43 43 H 1.09007 * 109.49414 * 301.33886 * 14 6 4 44 44 H 1.08995 * 109.49288 * 61.40190 * 14 6 4 45 45 H 1.09000 * 111.00291 * 272.11475 * 17 15 3 46 46 H 1.08997 * 111.00941 * 35.92816 * 17 15 3 47 47 H 1.08999 * 110.36494 * 81.84771 * 18 17 15 48 48 H 1.08999 * 110.36544 * 204.16436 * 18 17 15 49 49 H 0.96997 * 120.00145 * 180.02562 * 23 22 20 50 50 H 1.09005 * 109.88388 * 239.55418 * 28 19 18 51 51 H 1.08997 * 110.01309 * 118.46276 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 1.6537 2.2249 -0.9855 5 8 2.1857 3.3105 -1.0823 6 6 0.5847 1.8195 -1.9674 7 6 1.1200 0.7092 -2.8744 8 6 0.0196 0.2757 -3.8480 9 7 -0.4685 1.4600 -4.5678 10 6 -0.4987 1.4807 -5.9150 11 7 -0.1789 0.3733 -6.6134 12 8 -0.8144 2.4986 -6.5005 13 6 -0.9226 2.6214 -3.7908 14 6 0.1884 3.0286 -2.8178 15 6 2.9034 1.8451 1.0714 16 1 3.2603 2.8541 0.8650 17 6 2.1811 1.7882 2.4433 18 6 3.3751 1.6361 3.4185 19 7 4.3319 0.7659 2.7100 20 6 5.2890 -0.0148 3.3011 21 1 5.9448 -0.6193 2.6920 22 6 5.4165 -0.0294 4.6834 23 7 4.6176 0.7076 5.4257 24 14 6.7226 -1.0938 5.4898 25 1 8.0652 -0.6784 5.0101 26 1 6.6523 -0.9317 6.9642 27 1 6.4890 -2.5170 5.1361 28 6 4.0885 0.8756 1.2642 29 1 -0.3633 -0.0952 -1.0233 30 1 -0.3634 -0.8385 0.5940 31 1 -0.3633 0.9339 0.4291 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 -0.2878 1.4558 -1.4246 35 1 1.9774 1.0800 -3.4360 36 1 1.4238 -0.1428 -2.2661 37 1 -0.8012 -0.1786 -3.2931 38 1 0.4242 -0.4436 -4.5601 39 1 0.0050 -0.4575 -6.1477 40 1 -0.1327 0.4069 -7.5817 41 1 -1.8201 2.3584 -3.2312 42 1 -1.1395 3.4499 -4.4651 43 1 -0.1709 3.8276 -2.1691 44 1 1.0547 3.3778 -3.3795 45 1 1.6346 2.7115 2.6358 46 1 1.5179 0.9251 2.5002 47 1 3.8251 2.6079 3.6216 48 1 3.0495 1.1665 4.3466 49 1 4.7068 0.6978 6.3915 50 1 3.8372 -0.1031 0.8553 51 1 4.9742 1.2691 0.7656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034033849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:36 Heat of formation + Delta-G solvation = -15.191254 kcal Electronic energy + Delta-G solvation = -31145.765698 eV Core-core repulsion = 27081.748927 eV Total energy + Delta-G solvation = -4064.016771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05118 -40.02946 -37.80688 -36.99139 -35.49400 -34.30176 -33.08825 -32.03465 -31.23617 -30.35384 -29.11998 -27.48688 -26.13097 -24.49016 -23.91188 -23.63514 -21.97083 -20.55469 -20.23789 -19.71009 -18.88517 -18.57667 -17.26689 -17.05381 -17.03196 -16.03859 -15.78623 -15.43406 -15.16948 -14.89277 -14.70851 -14.42793 -14.15394 -14.08839 -13.62363 -13.61074 -13.30711 -12.95908 -12.78199 -12.49936 -12.44181 -12.34321 -11.93062 -11.76782 -11.66085 -11.53520 -11.37867 -11.08794 -10.92071 -10.88561 -10.81523 -10.48745 -10.46171 -10.38794 -10.18015 -10.02127 -9.85922 -9.62053 -9.52855 -8.93015 -8.69786 -8.36711 -6.89305 -5.69739 -3.12375 2.44665 2.69640 2.88446 3.10869 3.37162 3.41842 3.43036 3.75103 4.26559 4.32221 4.45312 4.48499 4.67028 4.83313 4.91070 4.96114 5.05511 5.07469 5.13245 5.24190 5.30507 5.40220 5.43012 5.43986 5.53928 5.57927 5.60348 5.67373 5.70988 5.81544 5.82873 5.86019 6.05148 6.11193 6.13685 6.21815 6.34926 6.45065 6.52293 6.53138 6.58092 6.67697 6.97412 7.45756 7.50610 7.56776 7.61235 7.80104 8.28789 8.29542 8.33369 9.16657 9.77338 10.41491 11.33821 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.002390 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.293027 B =11711.462379 C =12045.514766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.098 3.902 3 N -0.598 5.598 4 C 0.519 3.481 5 O -0.541 6.541 6 C -0.119 4.119 7 C -0.138 4.138 8 C 0.114 3.886 9 N -0.627 5.627 10 C 0.710 3.290 11 N -0.869 5.869 12 O -0.594 6.594 13 C 0.129 3.871 14 C -0.115 4.115 15 C 0.125 3.875 16 H 0.101 0.899 17 C -0.151 4.151 18 C 0.153 3.847 19 N -0.602 5.602 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.922 5.922 24 Si 0.916 3.084 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.131 3.869 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.413 0.587 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.014 0.986 48 H 0.109 0.891 49 H 0.253 0.747 50 H 0.027 0.973 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 -4.685 -18.130 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.307 3.693 5 O -0.418 6.418 6 C -0.140 4.140 7 C -0.176 4.176 8 C -0.009 4.009 9 N -0.366 5.366 10 C 0.409 3.591 11 N -0.439 5.439 12 O -0.473 6.473 13 C 0.006 3.994 14 C -0.154 4.154 15 C 0.022 3.978 16 H 0.119 0.881 17 C -0.191 4.191 18 C 0.028 3.972 19 N -0.329 5.329 20 C -0.352 4.352 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.746 3.254 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.004 3.996 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.226 0.774 40 H 0.245 0.755 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.032 0.968 48 H 0.127 0.873 49 H 0.064 0.936 50 H 0.045 0.955 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.792 -3.400 -18.188 23.077 hybrid contribution 0.973 -1.070 0.368 1.493 sum -12.818 -4.471 -17.819 22.401 Atomic orbital electron populations 1.22577 0.95896 1.03135 1.02111 1.21702 0.94088 0.83142 1.03583 1.48011 1.48489 1.11427 1.25105 1.20483 0.83240 0.84416 0.81165 1.90684 1.55118 1.23002 1.73020 1.21748 0.98817 0.97510 0.95960 1.22149 0.98718 0.99106 0.97658 1.21663 0.96902 0.87211 0.95160 1.47288 1.68017 1.17435 1.03824 1.15859 0.77884 0.83749 0.81579 1.43161 1.78026 1.11774 1.10962 1.90962 1.55675 1.31857 1.68761 1.21556 0.95963 0.88270 0.93615 1.21772 0.99419 0.96771 0.97439 1.22243 0.90398 0.99267 0.85864 0.88089 1.23384 0.99717 1.00573 0.95379 1.21948 0.85881 0.93691 0.95657 1.44435 1.38596 1.50934 0.98885 1.19011 1.08527 1.17868 0.89815 0.90542 1.24794 0.99650 1.00067 0.96033 1.69775 1.39755 1.43056 1.04445 0.86141 0.81072 0.79836 0.78363 1.21193 1.21543 1.21153 1.21509 0.94379 0.95826 0.87917 0.91727 0.91417 0.91507 0.91098 0.88577 0.86919 0.90719 0.88858 0.90798 0.90129 0.77391 0.75515 0.91480 0.88456 0.89963 0.90571 0.92237 0.91794 0.96786 0.87315 0.93601 0.95481 0.95836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 8.19 37.16 0.30 -1.12 16 2 C 0.10 1.05 4.47 -4.04 -0.02 1.03 16 3 N -0.60 -8.41 2.59 -164.03 -0.43 -8.84 16 4 C 0.52 7.31 6.74 -10.98 -0.07 7.23 16 5 O -0.54 -9.89 15.41 5.56 0.09 -9.80 16 6 C -0.12 -1.13 1.57 -91.73 -0.14 -1.28 16 7 C -0.14 -1.03 4.44 -26.62 -0.12 -1.15 16 8 C 0.11 0.62 6.33 -3.71 -0.02 0.59 16 9 N -0.63 -5.24 2.97 -178.50 -0.53 -5.77 16 10 C 0.71 7.25 8.57 -86.93 -0.75 6.50 16 11 N -0.87 -5.13 8.74 27.63 0.24 -4.89 16 12 O -0.59 -8.75 16.60 5.28 0.09 -8.66 16 13 C 0.13 1.14 6.44 -3.71 -0.02 1.11 16 14 C -0.12 -1.17 4.69 -26.61 -0.12 -1.29 16 15 C 0.13 2.25 3.31 -66.09 -0.22 2.03 16 16 H 0.10 2.01 7.02 -51.93 -0.36 1.65 16 17 C -0.15 -2.80 6.61 -24.58 -0.16 -2.96 16 18 C 0.15 3.65 5.89 -2.50 -0.01 3.63 16 19 N -0.60 -15.04 3.40 -170.04 -0.58 -15.62 16 20 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -26.34 10.09 55.49 0.56 -25.78 16 24 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.13 2.69 6.70 -3.07 -0.02 2.66 16 29 H 0.06 0.36 5.05 -51.93 -0.26 0.10 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.62 7.44 -51.93 -0.39 0.23 16 32 H 0.07 0.62 5.47 -51.93 -0.28 0.34 16 33 H 0.10 1.24 6.33 -51.93 -0.33 0.91 16 34 H 0.11 0.89 4.47 -51.93 -0.23 0.65 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.60 4.38 -51.93 -0.23 0.37 16 37 H 0.07 0.29 7.82 -51.93 -0.41 -0.12 16 38 H 0.08 0.26 5.74 -51.93 -0.30 -0.04 16 39 H 0.40 1.22 6.42 -40.82 -0.26 0.96 16 40 H 0.41 2.03 8.93 -40.82 -0.36 1.67 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 1.02 7.00 -51.93 -0.36 0.65 16 43 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 44 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.12 7.11 -51.93 -0.37 0.75 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.11 2.88 5.88 -51.93 -0.31 2.58 16 49 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 50 H 0.03 0.53 6.34 -51.93 -0.33 0.20 16 51 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -35.23 376.93 -9.24 -44.47 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.70 Total: 2.22 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -1.63 Total: 10.38 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.73 Total: -60.89 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.23 -9.24 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034033849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.275 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds