Wall clock time and date at job start Tue Mar 31 2020 21:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46491 * 109.47581 * 2 1 4 4 C 1.34774 * 120.00303 * 302.39142 * 3 2 1 5 5 O 1.21276 * 120.00394 * 189.30118 * 4 3 2 6 6 C 1.50706 * 119.99746 * 9.29969 * 4 3 2 7 7 C 1.53036 * 109.46238 * 290.21227 * 6 4 3 8 8 C 1.53188 * 109.31204 * 178.61457 * 7 6 4 9 9 N 1.46928 * 108.78048 * 54.63537 * 8 7 6 10 10 C 1.34769 * 120.63207 * 126.36732 * 9 8 7 11 11 N 1.34773 * 120.00409 * 5.21926 * 10 9 8 12 12 O 1.21595 * 120.00055 * 185.22218 * 10 9 8 13 13 C 1.46929 * 118.73261 * 306.39140 * 9 8 7 14 14 C 1.53047 * 109.45983 * 170.14249 * 6 4 3 15 15 C 1.46503 * 120.00055 * 122.38826 * 3 2 1 16 16 H 1.09000 * 110.63990 * 173.77395 * 15 3 2 17 17 C 1.55153 * 110.72023 * 296.92104 * 15 3 2 18 18 C 1.54912 * 101.61669 * 154.02310 * 17 15 3 19 19 N 1.47471 * 104.80985 * 323.03988 * 18 17 15 20 20 C 1.36930 * 125.62879 * 204.05044 * 19 18 17 21 21 H 1.08000 * 120.00158 * 180.02562 * 20 19 18 22 22 C 1.38818 * 120.00090 * 0.02650 * 20 19 18 23 23 N 1.31623 * 119.99927 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00039 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47058 * 59.99996 * 24 22 20 26 26 H 1.48501 * 109.47081 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47100 * 299.99787 * 24 22 20 28 28 C 1.47018 * 108.72085 * 24.07154 * 19 18 17 29 29 H 1.09005 * 109.47099 * 95.31403 * 1 2 3 30 30 H 1.08997 * 109.47652 * 215.31584 * 1 2 3 31 31 H 1.09003 * 109.46869 * 335.32326 * 1 2 3 32 32 H 1.08999 * 109.46642 * 239.99507 * 2 1 3 33 33 H 1.09002 * 109.46605 * 120.00708 * 2 1 3 34 34 H 1.09006 * 109.45701 * 50.17542 * 6 4 3 35 35 H 1.09002 * 109.49560 * 298.56522 * 7 6 4 36 36 H 1.09001 * 109.50086 * 58.66028 * 7 6 4 37 37 H 1.09002 * 109.58901 * 294.84594 * 8 7 6 38 38 H 1.09001 * 109.58918 * 174.42492 * 8 7 6 39 39 H 0.97003 * 119.99676 * 4.80974 * 11 10 9 40 40 H 0.96997 * 120.00572 * 184.80920 * 11 10 9 41 41 H 1.08991 * 109.59086 * 293.81604 * 13 9 8 42 42 H 1.09003 * 109.58370 * 173.39288 * 13 9 8 43 43 H 1.09007 * 109.49414 * 301.33886 * 14 6 4 44 44 H 1.08995 * 109.49288 * 61.40190 * 14 6 4 45 45 H 1.09000 * 111.00291 * 272.11475 * 17 15 3 46 46 H 1.08997 * 111.00941 * 35.92816 * 17 15 3 47 47 H 1.08999 * 110.36494 * 81.84771 * 18 17 15 48 48 H 1.08999 * 110.36544 * 204.16436 * 18 17 15 49 49 H 0.96997 * 120.00145 * 180.02562 * 23 22 20 50 50 H 1.09005 * 109.88388 * 239.55418 * 28 19 18 51 51 H 1.08997 * 110.01309 * 118.46276 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 1.6537 2.2249 -0.9855 5 8 2.1857 3.3105 -1.0823 6 6 0.5847 1.8195 -1.9674 7 6 1.1200 0.7092 -2.8744 8 6 0.0196 0.2757 -3.8480 9 7 -0.4685 1.4600 -4.5678 10 6 -0.4987 1.4807 -5.9150 11 7 -0.1789 0.3733 -6.6134 12 8 -0.8144 2.4986 -6.5005 13 6 -0.9226 2.6214 -3.7908 14 6 0.1884 3.0286 -2.8178 15 6 2.9034 1.8451 1.0714 16 1 3.2603 2.8541 0.8650 17 6 2.1811 1.7882 2.4433 18 6 3.3751 1.6361 3.4185 19 7 4.3319 0.7659 2.7100 20 6 5.2890 -0.0148 3.3011 21 1 5.9448 -0.6193 2.6920 22 6 5.4165 -0.0294 4.6834 23 7 4.6176 0.7076 5.4257 24 14 6.7226 -1.0938 5.4898 25 1 8.0652 -0.6784 5.0101 26 1 6.6523 -0.9317 6.9642 27 1 6.4890 -2.5170 5.1361 28 6 4.0885 0.8756 1.2642 29 1 -0.3633 -0.0952 -1.0233 30 1 -0.3634 -0.8385 0.5940 31 1 -0.3633 0.9339 0.4291 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 -0.2878 1.4558 -1.4246 35 1 1.9774 1.0800 -3.4360 36 1 1.4238 -0.1428 -2.2661 37 1 -0.8012 -0.1786 -3.2931 38 1 0.4242 -0.4436 -4.5601 39 1 0.0050 -0.4575 -6.1477 40 1 -0.1327 0.4069 -7.5817 41 1 -1.8201 2.3584 -3.2312 42 1 -1.1395 3.4499 -4.4651 43 1 -0.1709 3.8276 -2.1691 44 1 1.0547 3.3778 -3.3795 45 1 1.6346 2.7115 2.6358 46 1 1.5179 0.9251 2.5002 47 1 3.8251 2.6079 3.6216 48 1 3.0495 1.1665 4.3466 49 1 4.7068 0.6978 6.3915 50 1 3.8372 -0.1031 0.8553 51 1 4.9742 1.2691 0.7656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034033849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:35 Heat of formation + Delta-G solvation = -41.054686 kcal Electronic energy + Delta-G solvation = -31146.887221 eV Core-core repulsion = 27081.748927 eV Total energy + Delta-G solvation = -4065.138294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95475 -40.95735 -39.19225 -38.02210 -36.77646 -35.06340 -34.45727 -33.28322 -31.96659 -31.45418 -30.76581 -28.99198 -27.18808 -26.24713 -24.72590 -24.32384 -22.94947 -22.11973 -21.64704 -20.42936 -20.00856 -19.31388 -18.96451 -18.22938 -17.85250 -17.23477 -16.72372 -16.51420 -16.20184 -16.16713 -15.81860 -15.61226 -15.39574 -15.16040 -14.84458 -14.40009 -14.25179 -14.15980 -13.86229 -13.70377 -13.53854 -13.47475 -13.27832 -13.07167 -12.97622 -12.69224 -12.50123 -12.39070 -12.29473 -12.13355 -12.11246 -12.06634 -11.81839 -11.63794 -11.43075 -11.30293 -11.14153 -10.76727 -10.70347 -10.66798 -9.59990 -9.56997 -8.92323 -7.78056 -5.24008 1.47624 1.50899 1.57217 1.59534 1.83241 1.94179 2.17433 2.50445 3.27028 3.32154 3.40559 3.68216 3.72626 3.75578 3.88602 3.94386 4.03192 4.10308 4.19855 4.29096 4.34283 4.40410 4.42050 4.51398 4.56945 4.61460 4.64345 4.72629 4.82551 4.84094 4.89236 4.91870 4.95193 5.02833 5.11419 5.14340 5.18761 5.31209 5.44820 5.45751 5.53081 5.56585 5.64531 5.76849 5.89745 6.04691 6.27675 6.49705 6.95130 7.08268 7.19153 7.64727 7.74613 8.38422 9.23495 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.002390 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.293027 B =11711.462379 C =12045.514766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 N -0.595 5.595 4 C 0.515 3.485 5 O -0.591 6.591 6 C -0.107 4.107 7 C -0.134 4.134 8 C 0.113 3.887 9 N -0.627 5.627 10 C 0.700 3.300 11 N -0.849 5.849 12 O -0.648 6.648 13 C 0.134 3.866 14 C -0.110 4.110 15 C 0.140 3.860 16 H 0.076 0.924 17 C -0.129 4.129 18 C 0.156 3.844 19 N -0.621 5.621 20 C -0.240 4.240 21 H 0.082 0.918 22 C -0.064 4.064 23 N -0.949 5.949 24 Si 0.982 3.018 25 H -0.282 1.282 26 H -0.294 1.294 27 H -0.272 1.272 28 C 0.132 3.868 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.412 0.588 40 H 0.419 0.581 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.081 0.919 47 H -0.019 1.019 48 H 0.082 0.918 49 H 0.248 0.752 50 H 0.048 0.952 51 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.657 -7.898 -19.424 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.031 4.031 3 N -0.327 5.327 4 C 0.305 3.695 5 O -0.472 6.472 6 C -0.127 4.127 7 C -0.172 4.172 8 C -0.009 4.009 9 N -0.364 5.364 10 C 0.400 3.600 11 N -0.420 5.420 12 O -0.531 6.531 13 C 0.011 3.989 14 C -0.149 4.149 15 C 0.035 3.965 16 H 0.094 0.906 17 C -0.168 4.168 18 C 0.031 3.969 19 N -0.347 5.347 20 C -0.369 4.369 21 H 0.100 0.900 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.810 3.190 25 H -0.209 1.209 26 H -0.220 1.220 27 H -0.197 1.197 28 C 0.006 3.994 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.160 0.840 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.246 0.754 40 H 0.251 0.749 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.100 0.900 47 H -0.001 1.001 48 H 0.100 0.900 49 H 0.058 0.942 50 H 0.066 0.934 51 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -15.517 -6.703 -19.507 25.812 hybrid contribution 1.576 -0.051 0.750 1.746 sum -13.941 -6.755 -18.756 24.327 Atomic orbital electron populations 1.22549 0.93135 1.03182 1.04384 1.22014 0.96400 0.80764 1.03942 1.48040 1.47641 1.13037 1.23938 1.21353 0.83426 0.83497 0.81213 1.90671 1.56985 1.25274 1.74241 1.21788 0.97950 0.97889 0.95113 1.22160 0.98821 0.98572 0.97668 1.21956 0.97213 0.86346 0.95386 1.47336 1.67574 1.18103 1.03390 1.16145 0.77816 0.83889 0.82173 1.42961 1.76532 1.11294 1.11243 1.90928 1.58115 1.34100 1.69954 1.21464 0.96224 0.88258 0.92963 1.21679 0.98693 0.97100 0.97392 1.21737 0.90189 0.97502 0.87044 0.90595 1.23147 0.97807 1.01928 0.93966 1.21719 0.87489 0.91529 0.96161 1.44695 1.38548 1.50655 1.00843 1.19395 1.09094 1.18053 0.90364 0.90034 1.25641 1.01859 1.01574 0.96635 1.70023 1.41187 1.44421 1.04185 0.85105 0.78427 0.78693 0.76796 1.20883 1.22006 1.19717 1.21595 0.94902 0.97351 0.85570 0.88540 0.90108 0.92539 0.88403 0.90602 0.83987 0.92891 0.86988 0.87447 0.87408 0.75418 0.74866 0.88559 0.90721 0.90707 0.93834 0.90989 0.90021 1.00114 0.90029 0.94205 0.93394 0.97291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.19 71.98 0.59 -1.34 16 2 C 0.09 1.62 4.47 86.38 0.39 2.01 16 3 N -0.60 -15.82 2.59 -791.26 -2.05 -17.87 16 4 C 0.51 13.97 6.74 87.66 0.59 14.56 16 5 O -0.59 -22.16 15.41 -3.02 -0.05 -22.21 16 6 C -0.11 -1.75 1.57 -11.51 -0.02 -1.77 16 7 C -0.13 -1.49 4.44 30.67 0.14 -1.36 16 8 C 0.11 0.66 6.33 86.36 0.55 1.20 16 9 N -0.63 -8.70 2.97 -836.92 -2.49 -11.19 16 10 C 0.70 13.05 8.57 179.06 1.53 14.59 16 11 N -0.85 -7.65 8.74 -184.75 -1.61 -9.27 16 12 O -0.65 -19.06 16.60 -4.01 -0.07 -19.13 16 13 C 0.13 2.13 6.44 86.36 0.56 2.69 16 14 C -0.11 -2.14 4.69 30.67 0.14 -2.00 16 15 C 0.14 5.06 3.31 46.18 0.15 5.21 16 16 H 0.08 3.15 7.02 -2.39 -0.02 3.13 16 17 C -0.13 -4.77 6.61 31.99 0.21 -4.56 16 18 C 0.16 7.71 5.89 86.85 0.51 8.22 16 19 N -0.62 -31.66 3.40 -691.87 -2.35 -34.01 16 20 C -0.24 -13.24 10.27 84.04 0.86 -12.38 16 21 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 22 C -0.06 -3.59 5.49 84.86 0.47 -3.13 16 23 N -0.95 -55.71 10.09 21.65 0.22 -55.49 16 24 Si 0.98 44.71 29.55 68.60 2.03 46.73 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 C 0.13 5.45 6.70 86.73 0.58 6.04 16 29 H 0.10 0.44 5.05 -2.38 -0.01 0.43 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.80 7.44 -2.39 -0.02 0.78 16 32 H 0.10 1.25 5.47 -2.39 -0.01 1.24 16 33 H 0.08 1.74 6.33 -2.39 -0.02 1.73 16 34 H 0.14 1.55 4.47 -2.38 -0.01 1.54 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.11 0.85 4.38 -2.39 -0.01 0.84 16 37 H 0.11 0.06 7.82 -2.39 -0.02 0.04 16 38 H 0.11 0.09 5.74 -2.39 -0.01 0.07 16 39 H 0.41 0.82 6.42 -92.71 -0.59 0.23 16 40 H 0.42 3.19 8.93 -92.71 -0.83 2.36 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.57 7.00 -2.39 -0.02 1.55 16 43 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.04 1.13 8.03 -2.39 -0.02 1.11 16 45 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.08 2.74 7.11 -2.39 -0.02 2.72 16 47 H -0.02 -1.05 8.14 -2.39 -0.02 -1.06 16 48 H 0.08 4.49 5.88 -2.39 -0.01 4.48 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 50 H 0.05 1.80 6.34 -2.38 -0.02 1.78 16 51 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -82.98 376.93 0.44 -82.54 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -0.44 Total: 11.91 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 7.25 Total: 27.99 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -8.28 Total: -127.83 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.11 Total: -41.34 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -82.98 0.44 -82.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034033849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.488 kcal (2) G-P(sol) polarization free energy of solvation -82.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds