Wall clock time and date at job start Tue Mar 31 2020 22:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46003 * 118.53385 * 2 1 4 4 C 1.53001 * 110.04195 * 161.86625 * 3 2 1 5 5 N 1.47192 * 108.71409 * 50.30099 * 4 3 2 6 6 C 1.46901 * 110.99771 * 167.62383 * 5 4 3 7 7 C 1.50698 * 109.47023 * 188.94320 * 6 5 4 8 8 O 1.21286 * 120.00346 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99930 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00118 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.49220 * 325.05180 * 10 9 7 12 12 C 1.52566 * 109.49227 * 205.00146 * 10 9 7 13 13 C 1.47090 * 114.32362 * 155.00479 * 12 10 9 14 14 C 1.54863 * 110.32652 * 62.80546 * 13 12 10 15 15 N 1.44572 * 109.59485 * 288.72763 * 14 13 12 16 16 C 1.36943 * 118.64668 * 270.72573 * 15 14 13 17 17 H 1.07998 * 119.99717 * 26.48522 * 16 15 14 18 18 C 1.38812 * 120.00290 * 206.48234 * 16 15 14 19 19 N 1.31626 * 119.99668 * 15.68427 * 18 16 15 20 20 Si 1.86797 * 119.99909 * 195.68599 * 18 16 15 21 21 H 1.48497 * 109.47258 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47133 * 120.00565 * 20 18 16 23 23 H 1.48504 * 109.46662 * 239.99902 * 20 18 16 24 24 C 1.47613 * 122.71537 * 90.70492 * 15 14 13 25 25 C 1.50831 * 109.50428 * 85.11012 * 10 9 7 26 26 C 1.46900 * 110.17967 * 290.99329 * 5 4 3 27 27 C 1.33713 * 118.53716 * 180.02562 * 2 1 3 28 28 O 1.21281 * 118.62669 * 1.65681 * 27 2 1 29 29 H 1.09005 * 109.47347 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47491 * 299.97168 * 1 2 3 31 31 H 1.09002 * 109.47370 * 59.97786 * 1 2 3 32 32 H 1.08999 * 109.38244 * 282.03762 * 3 2 1 33 33 H 1.09004 * 109.37712 * 41.69256 * 3 2 1 34 34 H 1.09003 * 109.60834 * 290.53236 * 4 3 2 35 35 H 1.08993 * 109.59505 * 170.06988 * 4 3 2 36 36 H 1.08996 * 109.47435 * 68.93944 * 6 5 4 37 37 H 1.09002 * 109.47220 * 308.94203 * 6 5 4 38 38 H 0.97001 * 120.00064 * 0.02562 * 9 7 6 39 39 H 1.09001 * 108.51140 * 33.74752 * 12 10 9 40 40 H 1.09000 * 108.39149 * 276.16788 * 12 10 9 41 41 H 1.09001 * 109.32958 * 302.54196 * 13 12 10 42 42 H 1.09008 * 109.32728 * 183.06768 * 13 12 10 43 43 H 1.08997 * 109.45092 * 168.69256 * 14 13 12 44 44 H 1.09000 * 109.44742 * 48.76667 * 14 13 12 45 45 H 0.96996 * 119.99260 * 179.97438 * 19 18 16 46 46 H 1.09001 * 108.94020 * 78.57340 * 24 15 14 47 47 H 1.08997 * 108.94639 * 197.20581 * 24 15 14 48 48 H 1.09000 * 109.38535 * 91.66573 * 25 10 9 49 49 H 1.09004 * 109.34213 * 332.05586 * 25 10 9 50 50 H 1.08996 * 109.38325 * 170.45532 * 26 5 4 51 51 H 1.09000 * 109.38033 * 290.24798 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1624 1.2827 0.0000 4 6 3.6129 1.0908 0.4474 5 7 4.2091 -0.0013 -0.3389 6 6 5.6675 -0.0386 -0.1667 7 6 6.2641 -1.0165 -1.1459 8 8 5.5452 -1.6230 -1.9116 9 7 7.5967 -1.2170 -1.1709 10 6 8.1766 -2.1680 -2.1224 11 1 7.4940 -3.0066 -2.2603 12 6 9.5089 -2.6795 -1.5830 13 6 9.9039 -3.9999 -2.0970 14 6 10.1089 -3.9408 -3.6308 15 7 8.8279 -3.7997 -4.2860 16 6 8.1381 -4.9317 -4.6296 17 1 8.2913 -5.8463 -4.0761 18 6 7.2420 -4.9037 -5.6894 19 7 7.2728 -3.9092 -6.5511 20 14 5.9924 -6.2772 -5.8924 21 1 6.1637 -7.2679 -4.7996 22 1 4.6208 -5.7109 -5.8360 23 1 6.1989 -6.9444 -7.2030 24 6 8.2326 -2.4859 -4.5996 25 6 8.4037 -1.4811 -3.4459 26 6 3.6018 -1.2854 0.0355 27 6 2.1038 -1.1747 -0.0005 28 8 1.4465 -2.1935 -0.0318 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 2.1468 1.7029 -1.0056 33 1 1.6606 1.9672 0.6840 34 1 3.6382 0.8347 1.5066 35 1 4.1724 2.0108 0.2781 36 1 5.9055 -0.3514 0.8499 37 1 6.0802 0.9540 -0.3474 38 1 8.1717 -0.7322 -0.5583 39 1 9.4435 -2.7364 -0.4964 40 1 10.2849 -1.9600 -1.8446 41 1 9.1243 -4.7254 -1.8648 42 1 10.8343 -4.3090 -1.6203 43 1 10.5901 -4.8587 -3.9683 44 1 10.7400 -3.0877 -3.8800 45 1 6.6469 -3.8899 -7.2918 46 1 8.7117 -2.0844 -5.4926 47 1 7.1692 -2.6178 -4.7993 48 1 9.4128 -1.0697 -3.4715 49 1 7.6825 -0.6720 -3.5612 50 1 3.9247 -2.0561 -0.6643 51 1 3.9190 -1.5555 1.0428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052501782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:43 Heat of formation + Delta-G solvation = -22.383688 kcal Electronic energy + Delta-G solvation = -31017.813046 eV Core-core repulsion = 26953.484388 eV Total energy + Delta-G solvation = -4064.328659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.74975 -39.65604 -37.91749 -36.99885 -35.38690 -34.56593 -32.84111 -31.15216 -30.61156 -30.23951 -29.38166 -26.84652 -25.79207 -24.93341 -23.81761 -23.23518 -22.69265 -20.32085 -19.96931 -19.17056 -18.88282 -17.52674 -16.96027 -16.62774 -16.53225 -16.22708 -15.85238 -15.27121 -15.02689 -14.81525 -14.53002 -14.37267 -14.08436 -13.74269 -13.50535 -13.26827 -13.13152 -12.91241 -12.82209 -12.58686 -12.41284 -12.37830 -12.16154 -11.94110 -11.86632 -11.65061 -11.37053 -11.02286 -10.80524 -10.70402 -10.33198 -10.14949 -10.03196 -9.98362 -9.87813 -9.64872 -9.51281 -9.45957 -8.94414 -8.76217 -8.62346 -8.26046 -6.56443 -5.66605 -3.10402 2.49787 2.76876 2.87447 3.08240 3.48956 3.58323 3.58464 3.68858 4.29605 4.37611 4.62381 4.66000 4.76893 4.89099 5.00146 5.05226 5.12310 5.14796 5.17330 5.19923 5.26505 5.33581 5.50322 5.54745 5.61650 5.62287 5.72473 5.77598 6.04526 6.13688 6.15257 6.23961 6.33846 6.38329 6.48205 6.52667 6.55607 6.64301 6.73558 6.82318 6.89614 7.05287 7.11443 7.20279 7.53548 7.79258 7.83400 7.95408 8.01197 8.54419 8.59288 9.35585 10.02616 10.46481 11.40929 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.003336 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.085457 B = 8392.437377 C = 9984.821666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.611 5.611 3 C 0.121 3.879 4 C 0.034 3.966 5 N -0.513 5.513 6 C 0.036 3.964 7 C 0.504 3.496 8 O -0.507 6.507 9 N -0.729 5.729 10 C 0.155 3.845 11 H 0.103 0.897 12 C -0.105 4.105 13 C -0.146 4.146 14 C 0.157 3.843 15 N -0.591 5.591 16 C -0.259 4.259 17 H 0.065 0.935 18 C 0.008 3.992 19 N -0.902 5.902 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.292 1.292 24 C 0.183 3.817 25 C -0.145 4.145 26 C 0.034 3.966 27 C 0.527 3.473 28 O -0.547 6.547 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.390 0.610 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.031 0.969 45 H 0.252 0.748 46 H 0.024 0.976 47 H 0.078 0.922 48 H 0.044 0.956 49 H 0.055 0.945 50 H 0.138 0.862 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 15.736 18.546 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.345 5.345 3 C -0.002 4.002 4 C -0.094 4.094 5 N -0.239 5.239 6 C -0.095 4.095 7 C 0.288 3.712 8 O -0.380 6.380 9 N -0.381 5.381 10 C 0.052 3.948 11 H 0.120 0.880 12 C -0.143 4.143 13 C -0.187 4.187 14 C 0.028 3.972 15 N -0.312 5.312 16 C -0.389 4.389 17 H 0.082 0.918 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.728 3.272 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.219 1.219 24 C 0.057 3.943 25 C -0.186 4.186 26 C -0.095 4.095 27 C 0.315 3.685 28 O -0.424 6.424 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.156 0.844 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.216 14.867 17.288 23.188 hybrid contribution -0.156 -0.279 1.018 1.067 sum -4.372 14.589 18.305 23.812 Atomic orbital electron populations 1.21729 0.79491 1.04644 1.01112 1.47299 1.07329 1.06212 1.73682 1.21478 0.91328 0.84868 1.02529 1.22557 0.95042 0.96097 0.95687 1.62142 1.03122 1.03425 1.55238 1.22073 0.88420 1.01016 0.98031 1.20312 0.82638 0.83462 0.84832 1.90788 1.59623 1.47531 1.40090 1.46303 1.06867 1.45185 1.39753 1.20515 0.95224 0.91759 0.87326 0.87952 1.20560 0.96068 0.98733 0.98953 1.21454 1.00152 0.96161 1.00938 1.20684 0.88251 0.98659 0.89561 1.43678 1.16700 1.02556 1.68303 1.19195 1.19396 0.90521 1.09793 0.91775 1.24995 1.01005 0.97672 0.95373 1.70062 1.37652 1.32761 1.14188 0.86302 0.81948 0.81685 0.77299 1.20305 1.21439 1.21867 1.20939 1.00008 0.82617 0.90721 1.22420 0.99706 0.99754 0.96676 1.22553 0.90120 0.94294 1.02580 1.20130 0.90317 0.82940 0.75113 1.90722 1.66720 1.34615 1.50301 0.89148 0.92364 0.92131 0.90597 0.90208 0.93559 0.88282 0.91728 0.87417 0.77744 0.93523 0.92873 0.91946 0.93092 0.93617 0.95043 0.93796 0.95758 0.90334 0.93726 0.92604 0.84412 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.55 59.85 0.63 1.31 16 2 N -0.61 -6.80 3.23 -182.47 -0.59 -7.39 16 3 C 0.12 0.90 6.64 -4.31 -0.03 0.87 16 4 C 0.03 0.24 5.60 -3.66 -0.02 0.22 16 5 N -0.51 -5.70 4.47 -237.54 -1.06 -6.77 16 6 C 0.04 0.34 5.44 -4.98 -0.03 0.31 16 7 C 0.50 7.33 7.41 -10.99 -0.08 7.25 16 8 O -0.51 -10.30 13.97 5.55 0.08 -10.22 16 9 N -0.73 -9.65 4.93 -55.09 -0.27 -9.93 16 10 C 0.15 2.68 2.06 -69.24 -0.14 2.54 16 11 H 0.10 2.29 6.92 -51.93 -0.36 1.93 16 12 C -0.11 -1.57 4.70 -29.79 -0.14 -1.71 16 13 C -0.15 -2.49 5.74 -28.59 -0.16 -2.66 16 14 C 0.16 3.22 5.66 -4.09 -0.02 3.19 16 15 N -0.59 -14.75 2.27 -172.09 -0.39 -15.14 16 16 C -0.26 -7.26 9.44 -15.06 -0.14 -7.40 16 17 H 0.06 1.78 7.88 -52.49 -0.41 1.36 16 18 C 0.01 0.24 4.87 -17.43 -0.08 0.15 16 19 N -0.90 -27.14 11.01 55.49 0.61 -26.53 16 20 Si 0.90 23.08 29.58 -169.99 -5.03 18.05 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 C 0.18 4.50 4.67 -2.94 -0.01 4.48 16 25 C -0.15 -2.79 5.38 -27.33 -0.15 -2.94 16 26 C 0.03 0.46 5.14 -5.19 -0.03 0.44 16 27 C 0.53 7.73 7.57 -11.67 -0.09 7.64 16 28 O -0.55 -10.10 16.07 5.56 0.09 -10.01 16 29 H 0.09 1.03 6.67 -51.93 -0.35 0.69 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.37 8.13 -51.93 -0.42 -0.06 16 34 H 0.05 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.10 0.45 7.91 -51.93 -0.41 0.04 16 36 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 37 H 0.11 0.73 7.93 -51.93 -0.41 0.32 16 38 H 0.39 3.61 8.60 -40.82 -0.35 3.26 16 39 H 0.05 0.60 8.04 -51.93 -0.42 0.18 16 40 H 0.05 0.73 7.35 -51.93 -0.38 0.35 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 44 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.02 0.65 8.03 -51.93 -0.42 0.23 16 47 H 0.08 2.26 6.33 -51.93 -0.33 1.93 16 48 H 0.04 0.78 7.31 -51.93 -0.38 0.40 16 49 H 0.06 1.08 7.84 -51.93 -0.41 0.68 16 50 H 0.14 2.38 6.00 -51.93 -0.31 2.07 16 51 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -36.60 391.92 -9.85 -46.45 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.70 Total: 1.85 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -0.50 Total: 13.71 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -1.70 Total: -65.74 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.17 Total: -20.23 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.60 -9.85 -46.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052501782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.069 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds