Wall clock time and date at job start Tue Mar 31 2020 22:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46003 * 118.53385 * 2 1 4 4 C 1.53001 * 110.04195 * 161.86625 * 3 2 1 5 5 N 1.47192 * 108.71409 * 50.30099 * 4 3 2 6 6 C 1.46901 * 110.99771 * 167.62383 * 5 4 3 7 7 C 1.50698 * 109.47023 * 188.94320 * 6 5 4 8 8 O 1.21286 * 120.00346 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99930 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00118 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.49220 * 325.05180 * 10 9 7 12 12 C 1.52566 * 109.49227 * 205.00146 * 10 9 7 13 13 C 1.47090 * 114.32362 * 155.00479 * 12 10 9 14 14 C 1.54863 * 110.32652 * 62.80546 * 13 12 10 15 15 N 1.44572 * 109.59485 * 288.72763 * 14 13 12 16 16 C 1.36943 * 118.64668 * 270.72573 * 15 14 13 17 17 H 1.07998 * 119.99717 * 26.48522 * 16 15 14 18 18 C 1.38812 * 120.00290 * 206.48234 * 16 15 14 19 19 N 1.31626 * 119.99668 * 15.68427 * 18 16 15 20 20 Si 1.86797 * 119.99909 * 195.68599 * 18 16 15 21 21 H 1.48497 * 109.47258 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47133 * 120.00565 * 20 18 16 23 23 H 1.48504 * 109.46662 * 239.99902 * 20 18 16 24 24 C 1.47613 * 122.71537 * 90.70492 * 15 14 13 25 25 C 1.50831 * 109.50428 * 85.11012 * 10 9 7 26 26 C 1.46900 * 110.17967 * 290.99329 * 5 4 3 27 27 C 1.33713 * 118.53716 * 180.02562 * 2 1 3 28 28 O 1.21281 * 118.62669 * 1.65681 * 27 2 1 29 29 H 1.09005 * 109.47347 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47491 * 299.97168 * 1 2 3 31 31 H 1.09002 * 109.47370 * 59.97786 * 1 2 3 32 32 H 1.08999 * 109.38244 * 282.03762 * 3 2 1 33 33 H 1.09004 * 109.37712 * 41.69256 * 3 2 1 34 34 H 1.09003 * 109.60834 * 290.53236 * 4 3 2 35 35 H 1.08993 * 109.59505 * 170.06988 * 4 3 2 36 36 H 1.08996 * 109.47435 * 68.93944 * 6 5 4 37 37 H 1.09002 * 109.47220 * 308.94203 * 6 5 4 38 38 H 0.97001 * 120.00064 * 0.02562 * 9 7 6 39 39 H 1.09001 * 108.51140 * 33.74752 * 12 10 9 40 40 H 1.09000 * 108.39149 * 276.16788 * 12 10 9 41 41 H 1.09001 * 109.32958 * 302.54196 * 13 12 10 42 42 H 1.09008 * 109.32728 * 183.06768 * 13 12 10 43 43 H 1.08997 * 109.45092 * 168.69256 * 14 13 12 44 44 H 1.09000 * 109.44742 * 48.76667 * 14 13 12 45 45 H 0.96996 * 119.99260 * 179.97438 * 19 18 16 46 46 H 1.09001 * 108.94020 * 78.57340 * 24 15 14 47 47 H 1.08997 * 108.94639 * 197.20581 * 24 15 14 48 48 H 1.09000 * 109.38535 * 91.66573 * 25 10 9 49 49 H 1.09004 * 109.34213 * 332.05586 * 25 10 9 50 50 H 1.08996 * 109.38325 * 170.45532 * 26 5 4 51 51 H 1.09000 * 109.38033 * 290.24798 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1624 1.2827 0.0000 4 6 3.6129 1.0908 0.4474 5 7 4.2091 -0.0013 -0.3389 6 6 5.6675 -0.0386 -0.1667 7 6 6.2641 -1.0165 -1.1459 8 8 5.5452 -1.6230 -1.9116 9 7 7.5967 -1.2170 -1.1709 10 6 8.1766 -2.1680 -2.1224 11 1 7.4940 -3.0066 -2.2603 12 6 9.5089 -2.6795 -1.5830 13 6 9.9039 -3.9999 -2.0970 14 6 10.1089 -3.9408 -3.6308 15 7 8.8279 -3.7997 -4.2860 16 6 8.1381 -4.9317 -4.6296 17 1 8.2913 -5.8463 -4.0761 18 6 7.2420 -4.9037 -5.6894 19 7 7.2728 -3.9092 -6.5511 20 14 5.9924 -6.2772 -5.8924 21 1 6.1637 -7.2679 -4.7996 22 1 4.6208 -5.7109 -5.8360 23 1 6.1989 -6.9444 -7.2030 24 6 8.2326 -2.4859 -4.5996 25 6 8.4037 -1.4811 -3.4459 26 6 3.6018 -1.2854 0.0355 27 6 2.1038 -1.1747 -0.0005 28 8 1.4465 -2.1935 -0.0318 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 2.1468 1.7029 -1.0056 33 1 1.6606 1.9672 0.6840 34 1 3.6382 0.8347 1.5066 35 1 4.1724 2.0108 0.2781 36 1 5.9055 -0.3514 0.8499 37 1 6.0802 0.9540 -0.3474 38 1 8.1717 -0.7322 -0.5583 39 1 9.4435 -2.7364 -0.4964 40 1 10.2849 -1.9600 -1.8446 41 1 9.1243 -4.7254 -1.8648 42 1 10.8343 -4.3090 -1.6203 43 1 10.5901 -4.8587 -3.9683 44 1 10.7400 -3.0877 -3.8800 45 1 6.6469 -3.8899 -7.2918 46 1 8.7117 -2.0844 -5.4926 47 1 7.1692 -2.6178 -4.7993 48 1 9.4128 -1.0697 -3.4715 49 1 7.6825 -0.6720 -3.5612 50 1 3.9247 -2.0561 -0.6643 51 1 3.9190 -1.5555 1.0428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052501782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:42 Heat of formation + Delta-G solvation = -51.792179 kcal Electronic energy + Delta-G solvation = -31019.088294 eV Core-core repulsion = 26953.484388 eV Total energy + Delta-G solvation = -4065.603906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71021 -40.87836 -39.31808 -38.08948 -36.44061 -36.05791 -34.46677 -32.72481 -32.33685 -31.07632 -30.40974 -28.08203 -27.26703 -25.91093 -25.28288 -24.98027 -23.58075 -21.66384 -21.25419 -20.91333 -19.72047 -18.57191 -18.46927 -17.86335 -17.59360 -17.33405 -17.07085 -16.72594 -16.30069 -16.00192 -15.78846 -15.62163 -15.36738 -15.25678 -14.77644 -14.65150 -14.39741 -14.18434 -13.99686 -13.63257 -13.54494 -13.51700 -13.28434 -13.13857 -13.01723 -12.88870 -12.81737 -12.60173 -12.40826 -12.31447 -12.08649 -12.02084 -11.73441 -11.48213 -11.36601 -11.33310 -11.09546 -10.64902 -10.44725 -9.96765 -9.79912 -9.46037 -8.64630 -7.87410 -5.31793 1.36430 1.41187 1.42935 1.49107 1.79150 1.94950 2.15124 2.47953 2.79249 3.27765 3.47513 3.69189 3.79706 3.84002 3.89015 4.01377 4.12348 4.25344 4.28072 4.38728 4.41143 4.43307 4.49808 4.50899 4.54207 4.61095 4.64496 4.73733 4.74666 4.87985 4.89196 4.96683 4.98885 5.04283 5.19946 5.25336 5.28551 5.33207 5.40164 5.54519 5.60205 5.62426 5.67933 5.76284 5.80327 5.88706 6.29009 6.40407 6.77797 6.99031 7.18243 7.51654 7.97202 8.33880 9.17328 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.003336 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.085457 B = 8392.437377 C = 9984.821666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.111 3.889 4 C 0.036 3.964 5 N -0.538 5.538 6 C 0.048 3.952 7 C 0.494 3.506 8 O -0.576 6.576 9 N -0.711 5.711 10 C 0.164 3.836 11 H 0.043 0.957 12 C -0.102 4.102 13 C -0.133 4.133 14 C 0.147 3.853 15 N -0.604 5.604 16 C -0.257 4.257 17 H 0.064 0.936 18 C -0.048 4.048 19 N -0.933 5.933 20 Si 0.951 3.049 21 H -0.266 1.266 22 H -0.303 1.303 23 H -0.284 1.284 24 C 0.195 3.805 25 C -0.128 4.128 26 C 0.044 3.956 27 C 0.514 3.486 28 O -0.604 6.604 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.417 0.583 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.089 0.911 43 H 0.036 0.964 44 H 0.050 0.950 45 H 0.245 0.755 46 H -0.006 1.006 47 H 0.024 0.976 48 H 0.075 0.925 49 H 0.048 0.952 50 H 0.089 0.911 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 18.905 22.329 29.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C -0.010 4.010 4 C -0.091 4.091 5 N -0.265 5.265 6 C -0.082 4.082 7 C 0.281 3.719 8 O -0.454 6.454 9 N -0.365 5.365 10 C 0.059 3.941 11 H 0.061 0.939 12 C -0.139 4.139 13 C -0.174 4.174 14 C 0.021 3.979 15 N -0.326 5.326 16 C -0.388 4.388 17 H 0.081 0.919 18 C -0.244 4.244 19 N -0.580 5.580 20 Si 0.780 3.220 21 H -0.191 1.191 22 H -0.231 1.231 23 H -0.211 1.211 24 C 0.069 3.931 25 C -0.168 4.168 26 C -0.087 4.087 27 C 0.303 3.697 28 O -0.485 6.485 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.167 0.833 38 H 0.254 0.746 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.012 0.988 47 H 0.043 0.957 48 H 0.093 0.907 49 H 0.067 0.933 50 H 0.107 0.893 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.242 18.112 21.144 27.931 hybrid contribution -0.730 -1.201 -0.155 1.414 sum -2.972 16.911 20.989 27.118 Atomic orbital electron populations 1.21866 0.78646 1.03425 1.03400 1.47501 1.08233 1.06564 1.71513 1.21873 0.92127 0.83372 1.03651 1.22753 0.94559 0.95806 0.95973 1.62037 1.04215 1.03050 1.57159 1.22136 0.87188 1.01184 0.97726 1.21443 0.82465 0.83288 0.84742 1.90793 1.61213 1.50259 1.43146 1.46001 1.07077 1.44308 1.39081 1.20074 0.95611 0.90699 0.87728 0.93866 1.20504 0.94774 0.97866 1.00805 1.21297 1.01142 0.97056 0.97879 1.20960 0.86217 0.99015 0.91704 1.43849 1.18401 1.01670 1.68701 1.19485 1.19105 0.91444 1.08746 0.91872 1.25654 1.03032 0.99850 0.95834 1.70206 1.38423 1.34519 1.14833 0.85442 0.79063 0.79730 0.77735 1.19066 1.23116 1.21088 1.20584 0.96297 0.83917 0.92256 1.22189 1.01154 0.97808 0.95659 1.22221 0.89522 0.94867 1.02094 1.20465 0.90917 0.83382 0.74951 1.90682 1.67849 1.36738 1.53258 0.92157 0.88945 0.90805 0.90883 0.86204 0.91781 0.84676 0.88145 0.83340 0.74583 0.90077 0.90039 0.94808 0.89220 0.94503 0.93185 0.94551 0.98764 0.95734 0.90657 0.93311 0.89318 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 10.55 127.77 1.35 2.57 16 2 N -0.61 -12.88 3.23 -850.19 -2.74 -15.63 16 3 C 0.11 1.28 6.64 86.47 0.57 1.86 16 4 C 0.04 0.35 5.60 86.25 0.48 0.83 16 5 N -0.54 -10.82 4.47 -905.44 -4.05 -14.86 16 6 C 0.05 0.72 5.44 85.56 0.47 1.19 16 7 C 0.49 13.91 7.41 87.66 0.65 14.56 16 8 O -0.58 -24.82 13.97 -3.05 -0.04 -24.86 16 9 N -0.71 -17.08 4.93 -446.58 -2.20 -19.28 16 10 C 0.16 5.54 2.06 44.14 0.09 5.63 16 11 H 0.04 2.02 6.92 -2.38 -0.02 2.00 16 12 C -0.10 -2.66 4.70 28.61 0.13 -2.52 16 13 C -0.13 -4.22 5.74 29.39 0.17 -4.05 16 14 C 0.15 5.92 5.66 87.38 0.49 6.41 16 15 N -0.60 -31.14 2.27 -698.37 -1.59 -32.73 16 16 C -0.26 -15.01 9.44 84.03 0.79 -14.21 16 17 H 0.06 3.62 7.88 -2.91 -0.02 3.60 16 18 C -0.05 -2.95 4.87 84.86 0.41 -2.53 16 19 N -0.93 -59.61 11.01 21.65 0.24 -59.37 16 20 Si 0.95 49.93 29.58 68.60 2.03 51.96 16 21 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.30 -16.58 7.11 99.48 0.71 -15.87 16 23 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 24 C 0.20 10.13 4.67 86.49 0.40 10.53 16 25 C -0.13 -4.90 5.38 30.21 0.16 -4.74 16 26 C 0.04 1.19 5.14 85.42 0.44 1.63 16 27 C 0.51 15.64 7.57 87.68 0.66 16.30 16 28 O -0.60 -24.09 16.07 -3.03 -0.05 -24.14 16 29 H 0.06 1.46 6.67 -2.38 -0.02 1.44 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.12 0.48 8.13 -2.38 -0.02 0.46 16 34 H 0.06 0.45 8.08 -2.39 -0.02 0.43 16 35 H 0.14 0.38 7.91 -2.39 -0.02 0.36 16 36 H 0.10 0.89 8.05 -2.39 -0.02 0.87 16 37 H 0.15 1.10 7.93 -2.39 -0.02 1.08 16 38 H 0.42 5.64 8.60 -92.71 -0.80 4.85 16 39 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 40 H 0.08 1.77 7.35 -2.39 -0.02 1.75 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.04 1.52 7.99 -2.39 -0.02 1.50 16 44 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 45 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 46 H -0.01 -0.32 8.03 -2.39 -0.02 -0.34 16 47 H 0.02 1.51 6.33 -2.39 -0.02 1.49 16 48 H 0.07 2.42 7.31 -2.39 -0.02 2.41 16 49 H 0.05 1.91 7.84 -2.39 -0.02 1.89 16 50 H 0.09 3.37 6.00 -2.39 -0.01 3.35 16 51 H 0.09 1.89 8.05 -2.39 -0.02 1.87 16 Total: -1.00 -93.28 391.92 -0.99 -94.28 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.13 Total: 11.17 kcal Atomic # 6 Polarization: 26.17 SS G_CDS: 7.28 Total: 33.45 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -10.34 Total: -141.87 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.09 Total: -49.00 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.03 Total: 51.96 kcal Total: -93.28 -0.99 -94.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052501782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.485 kcal (2) G-P(sol) polarization free energy of solvation -93.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds