Wall clock time and date at job start Tue Mar 31 2020 22:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46014 * 118.53440 * 2 1 4 4 C 1.52977 * 110.03984 * 161.81756 * 3 2 1 5 5 N 1.47190 * 108.73111 * 50.29383 * 4 3 2 6 6 C 1.46892 * 110.99907 * 54.36388 * 5 4 3 7 7 C 1.50711 * 109.47159 * 169.99990 * 6 5 4 8 8 O 1.21274 * 119.99596 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99707 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99551 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.20369 * 35.63802 * 10 9 7 12 12 C 1.50122 * 109.20774 * 155.00009 * 10 9 7 13 13 C 1.52536 * 105.41569 * 218.02503 * 12 10 9 14 14 C 1.46237 * 114.27493 * 270.59603 * 13 12 10 15 15 N 1.50167 * 107.53458 * 58.40823 * 14 13 12 16 16 C 1.36935 * 120.54034 * 109.56603 * 15 14 13 17 17 H 1.08003 * 120.00385 * 156.71071 * 16 15 14 18 18 C 1.38819 * 119.99888 * 336.70897 * 16 15 14 19 19 N 1.31618 * 119.99706 * 340.39360 * 18 16 15 20 20 Si 1.86802 * 120.00275 * 160.39723 * 18 16 15 21 21 H 1.48504 * 109.46825 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46872 * 119.99924 * 20 18 16 23 23 H 1.48499 * 109.47128 * 240.00022 * 20 18 16 24 24 C 1.43433 * 118.92558 * 289.58781 * 15 14 13 25 25 C 1.54846 * 109.20646 * 276.32457 * 10 9 7 26 26 C 1.46904 * 110.17318 * 290.99999 * 5 4 3 27 27 C 1.33709 * 118.53705 * 179.73305 * 2 1 3 28 28 O 1.21290 * 118.62389 * 1.71226 * 27 2 1 29 29 H 1.08995 * 109.47420 * 89.99780 * 1 2 3 30 30 H 1.09007 * 109.47406 * 329.99768 * 1 2 3 31 31 H 1.08997 * 109.46964 * 210.00126 * 1 2 3 32 32 H 1.09000 * 109.37709 * 281.99328 * 3 2 1 33 33 H 1.09002 * 109.37442 * 41.75981 * 3 2 1 34 34 H 1.09001 * 109.59441 * 170.06469 * 4 3 2 35 35 H 1.09003 * 109.59653 * 290.52275 * 4 3 2 36 36 H 1.08998 * 109.47596 * 290.00345 * 6 5 4 37 37 H 1.09008 * 109.47139 * 50.00525 * 6 5 4 38 38 H 0.96992 * 120.00558 * 0.02562 * 9 7 6 39 39 H 1.08991 * 110.25232 * 336.99723 * 12 10 9 40 40 H 1.09001 * 110.24876 * 99.05665 * 12 10 9 41 41 H 1.08992 * 108.52016 * 31.83598 * 13 12 10 42 42 H 1.09001 * 108.51790 * 149.51065 * 13 12 10 43 43 H 1.09006 * 109.84331 * 177.91373 * 14 13 12 44 44 H 1.09000 * 109.84593 * 298.83042 * 14 13 12 45 45 H 0.97002 * 120.00176 * 179.97438 * 19 18 16 46 46 H 1.09000 * 108.16268 * 213.29145 * 24 15 14 47 47 H 1.09008 * 108.15649 * 330.05799 * 24 15 14 48 48 H 1.08998 * 109.35880 * 320.99632 * 25 10 9 49 49 H 1.08999 * 109.36086 * 80.58255 * 25 10 9 50 50 H 1.08996 * 109.38659 * 170.45389 * 26 5 4 51 51 H 1.09003 * 109.38893 * 290.24565 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2828 0.0000 4 6 3.6125 1.0911 0.4485 5 7 4.2095 -0.0015 -0.3366 6 6 4.0680 0.2473 -1.7774 7 6 4.8957 -0.7524 -2.5435 8 8 5.5395 -1.5899 -1.9478 9 7 4.9202 -0.7156 -3.8906 10 6 5.7243 -1.6878 -4.6353 11 1 5.6996 -2.6460 -4.1163 12 6 5.1470 -1.8559 -6.0108 13 6 5.2909 -3.3401 -6.3323 14 6 6.5536 -3.6955 -6.9787 15 7 7.6655 -3.2748 -6.0613 16 6 8.4173 -4.2116 -5.4039 17 1 9.4114 -3.9635 -5.0622 18 6 7.9018 -5.4803 -5.1766 19 7 6.6021 -5.6815 -5.2287 20 14 9.0525 -6.9019 -4.7965 21 1 10.4559 -6.4163 -4.7967 22 1 8.7223 -7.4626 -3.4617 23 1 8.8940 -7.9568 -5.8296 24 6 7.9272 -1.8756 -5.8846 25 6 7.1879 -1.1876 -4.7101 26 6 3.6018 -1.2853 0.0381 27 6 2.1038 -1.1746 0.0055 28 8 1.4465 -2.1936 -0.0216 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5138 32 1 2.1476 1.7026 -1.0058 33 1 1.6614 1.9669 0.6849 34 1 4.1721 2.0110 0.2791 35 1 3.6367 0.8355 1.5078 36 1 3.0208 0.1466 -2.0625 37 1 4.4118 1.2559 -2.0074 38 1 4.4056 -0.0456 -4.3669 39 1 4.0955 -1.5690 -6.0163 40 1 5.7063 -1.2581 -6.7304 41 1 5.2059 -3.9052 -5.4042 42 1 4.4729 -3.6326 -6.9907 43 1 6.5956 -4.7725 -7.1414 44 1 6.6412 -3.1737 -7.9316 45 1 6.2418 -6.5681 -5.0702 46 1 8.9989 -1.7468 -5.7334 47 1 7.6518 -1.3597 -6.8045 48 1 7.1935 -0.1083 -4.8623 49 1 7.6979 -1.4213 -3.7756 50 1 3.9253 -2.0565 -0.6610 51 1 3.9179 -1.5549 1.0458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052501783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:47 Heat of formation + Delta-G solvation = -13.113951 kcal Electronic energy + Delta-G solvation = -31374.764103 eV Core-core repulsion = 27310.837410 eV Total energy + Delta-G solvation = -4063.926693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.14800 -39.48453 -37.90409 -37.13451 -35.23948 -34.49271 -32.27944 -31.52859 -30.45319 -30.14577 -29.01037 -27.19754 -26.01077 -24.96874 -23.97027 -23.22335 -22.41333 -20.53691 -19.92315 -19.10250 -18.65228 -17.47462 -17.00592 -16.65569 -16.55595 -16.18034 -15.68019 -15.44107 -14.99649 -14.86765 -14.54472 -14.26711 -13.78595 -13.72345 -13.42883 -13.28492 -13.24674 -13.12141 -12.88544 -12.45182 -12.37179 -12.19992 -11.92701 -11.80902 -11.68884 -11.62040 -11.38968 -11.20563 -10.74060 -10.59088 -10.52287 -10.28715 -10.18669 -9.98941 -9.72288 -9.45864 -9.35263 -9.29940 -9.10186 -8.59010 -8.47775 -8.30032 -6.64688 -5.71393 -3.10063 2.39496 2.58400 2.95464 3.21880 3.45042 3.53637 3.55465 3.80034 4.14251 4.47105 4.50200 4.59311 4.69817 4.90367 4.94263 4.98581 5.11716 5.14382 5.21074 5.31280 5.39537 5.40252 5.44972 5.50929 5.60675 5.71987 5.77364 5.91437 5.99819 6.05781 6.30422 6.34389 6.41611 6.44963 6.51926 6.55721 6.74580 6.92184 6.94064 6.98068 7.07471 7.08338 7.19179 7.26352 7.63602 7.82044 7.89165 7.91277 8.03036 8.50271 8.62276 9.26739 9.94242 10.46309 11.36420 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.002997 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.832131 B = 9340.208668 C = 9866.289553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.616 5.616 3 C 0.075 3.925 4 C 0.037 3.963 5 N -0.505 5.505 6 C 0.027 3.973 7 C 0.505 3.495 8 O -0.512 6.512 9 N -0.729 5.729 10 C 0.157 3.843 11 H 0.102 0.898 12 C -0.121 4.121 13 C -0.130 4.130 14 C 0.165 3.835 15 N -0.588 5.588 16 C -0.248 4.248 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.899 5.899 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.162 3.838 25 C -0.150 4.150 26 C 0.038 3.962 27 C 0.482 3.518 28 O -0.542 6.542 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.389 0.611 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.029 0.971 43 H 0.090 0.910 44 H 0.006 0.994 45 H 0.252 0.748 46 H 0.033 0.967 47 H 0.027 0.973 48 H 0.043 0.957 49 H 0.056 0.944 50 H 0.132 0.868 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 19.434 6.910 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.351 5.351 3 C -0.050 4.050 4 C -0.092 4.092 5 N -0.228 5.228 6 C -0.104 4.104 7 C 0.289 3.711 8 O -0.386 6.386 9 N -0.381 5.381 10 C 0.054 3.946 11 H 0.120 0.880 12 C -0.159 4.159 13 C -0.169 4.169 14 C 0.041 3.959 15 N -0.309 5.309 16 C -0.378 4.378 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.729 3.271 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.032 3.968 25 C -0.192 4.192 26 C -0.092 4.092 27 C 0.269 3.731 28 O -0.418 6.418 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.222 0.778 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.047 0.953 43 H 0.109 0.891 44 H 0.024 0.976 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.075 0.925 50 H 0.150 0.850 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.653 18.044 7.451 22.239 hybrid contribution -0.833 -0.092 -0.037 0.839 sum -11.486 17.952 7.413 22.565 Atomic orbital electron populations 1.21680 0.79535 1.03093 1.02014 1.47478 1.07394 1.06095 1.74161 1.22216 0.94938 0.85420 1.02434 1.22685 0.91009 0.96221 0.99238 1.62171 1.55370 1.01767 1.03445 1.22146 0.99191 1.00399 0.88667 1.20270 0.82515 0.85472 0.82854 1.90752 1.42586 1.37094 1.68205 1.46501 1.49816 1.35713 1.06032 1.21258 0.89411 0.92443 0.91458 0.88017 1.21358 0.98653 0.99816 0.96043 1.20937 0.98396 0.93110 1.04417 1.20163 0.86034 1.00884 0.88779 1.44274 1.38035 0.99637 1.48987 1.19232 0.95332 0.91801 1.31400 0.91468 1.24884 0.95329 0.99035 1.00222 1.69961 1.09718 1.21252 1.53503 0.86268 0.80540 0.82839 0.77413 1.20438 1.21847 1.21762 1.20355 0.96618 0.86152 0.93671 1.23291 0.95787 0.97808 1.02303 1.22672 0.85958 0.94246 1.06346 1.21574 0.92720 0.82915 0.75864 1.90735 1.67518 1.34398 1.49111 0.92728 0.91333 0.90330 0.91313 0.89973 0.87964 0.89103 0.91970 0.87547 0.77848 0.92985 0.91915 0.87871 0.95262 0.89148 0.97622 0.93823 0.94852 0.95432 0.93808 0.92468 0.84997 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.30 59.85 0.62 1.28 16 2 N -0.62 -6.01 3.03 -182.48 -0.55 -6.56 16 3 C 0.07 0.45 5.69 -4.32 -0.02 0.43 16 4 C 0.04 0.25 6.02 -3.68 -0.02 0.23 16 5 N -0.50 -5.58 4.75 -237.55 -1.13 -6.71 16 6 C 0.03 0.29 4.51 -4.97 -0.02 0.27 16 7 C 0.50 7.96 7.38 -10.98 -0.08 7.88 16 8 O -0.51 -10.66 14.19 5.56 0.08 -10.58 16 9 N -0.73 -10.81 4.97 -54.25 -0.27 -11.08 16 10 C 0.16 2.97 2.22 -68.39 -0.15 2.82 16 11 H 0.10 2.52 6.27 -51.93 -0.33 2.19 16 12 C -0.12 -2.11 5.34 -28.40 -0.15 -2.26 16 13 C -0.13 -2.75 5.02 -30.18 -0.15 -2.91 16 14 C 0.16 3.82 5.24 -5.20 -0.03 3.79 16 15 N -0.59 -14.45 2.60 -175.08 -0.46 -14.90 16 16 C -0.25 -6.82 9.63 -15.06 -0.14 -6.97 16 17 H 0.07 1.86 7.89 -52.48 -0.41 1.45 16 18 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 19 N -0.90 -25.48 9.43 55.49 0.52 -24.96 16 20 Si 0.90 22.21 29.60 -169.99 -5.03 17.18 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.16 3.39 5.18 -4.66 -0.02 3.37 16 25 C -0.15 -2.89 5.98 -24.76 -0.15 -3.04 16 26 C 0.04 0.51 5.49 -5.19 -0.03 0.48 16 27 C 0.48 6.55 6.83 -11.68 -0.08 6.47 16 28 O -0.54 -9.65 16.33 5.55 0.09 -9.55 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.36 7.92 -51.92 -0.41 -0.05 16 31 H 0.08 0.80 7.25 -51.93 -0.38 0.42 16 32 H 0.07 0.36 7.10 -51.93 -0.37 -0.01 16 33 H 0.08 0.32 7.98 -51.93 -0.41 -0.10 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.06 0.63 6.24 -51.93 -0.32 0.31 16 37 H 0.11 0.82 8.08 -51.92 -0.42 0.40 16 38 H 0.39 4.30 8.48 -40.82 -0.35 3.95 16 39 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 40 H 0.06 1.04 6.28 -51.93 -0.33 0.72 16 41 H 0.10 2.62 5.29 -51.93 -0.27 2.34 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 2.35 6.05 -51.93 -0.31 2.04 16 44 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 47 H 0.03 0.52 6.88 -51.92 -0.36 0.17 16 48 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 50 H 0.13 2.25 5.88 -51.93 -0.31 1.94 16 51 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -34.57 382.71 -9.82 -44.39 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.31 Total: 5.19 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -0.53 Total: 11.83 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -1.88 Total: -64.22 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.17 Total: -20.13 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.57 -9.82 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052501783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.277 kcal (2) G-P(sol) polarization free energy of solvation -34.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds