Wall clock time and date at job start Tue Mar 31 2020 22:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47908 * 110.99897 * 2 1 4 4 C 1.53987 * 107.05770 * 214.15376 * 3 2 1 5 5 C 1.54602 * 105.14081 * 1.22668 * 4 3 2 6 6 C 1.48526 * 111.00213 * 242.60684 * 2 1 3 7 7 H 1.09004 * 110.67023 * 41.28123 * 6 2 1 8 8 C 1.50703 * 110.66586 * 278.15717 * 6 2 1 9 9 O 1.21285 * 119.99662 * 330.87241 * 8 6 2 10 10 N 1.34772 * 120.00245 * 150.87691 * 8 6 2 11 11 C 1.47746 * 121.65329 * 4.65245 * 10 8 6 12 12 C 1.53602 * 108.48230 * 87.79616 * 11 10 8 13 13 C 1.50711 * 109.49157 * 55.02046 * 12 11 10 14 14 O 1.21280 * 120.23614 * 65.68332 * 13 12 11 15 15 N 1.35506 * 119.52072 * 245.65579 * 13 12 11 16 16 C 1.47110 * 118.10850 * 179.97438 * 15 13 12 17 17 C 1.52988 * 109.17621 * 259.43891 * 16 15 13 18 18 N 1.47772 * 108.82053 * 57.74975 * 17 16 15 19 19 C 1.36933 * 121.64207 * 82.98432 * 18 17 16 20 20 H 1.07996 * 120.00637 * 329.55085 * 19 18 17 21 21 C 1.38818 * 119.99885 * 149.55231 * 19 18 17 22 22 N 1.31623 * 119.99584 * 349.73398 * 21 19 18 23 23 Si 1.86796 * 120.00532 * 169.73171 * 21 19 18 24 24 H 1.48501 * 109.46898 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47336 * 119.99859 * 23 21 19 26 26 H 1.48499 * 109.47487 * 240.00125 * 23 21 19 27 27 C 1.47732 * 116.70682 * 263.00777 * 18 17 16 28 28 C 1.47769 * 121.65749 * 184.93160 * 10 8 6 29 29 H 1.09004 * 109.46952 * 59.87660 * 1 2 3 30 30 H 1.08996 * 109.47337 * 179.86774 * 1 2 3 31 31 H 1.08999 * 109.47321 * 299.87655 * 1 2 3 32 32 H 1.08996 * 109.91719 * 333.51186 * 3 2 1 33 33 H 1.08999 * 109.91306 * 94.80077 * 3 2 1 34 34 H 1.08997 * 110.30554 * 120.14205 * 4 3 2 35 35 H 1.08997 * 110.30939 * 242.21012 * 4 3 2 36 36 H 1.09003 * 110.72439 * 140.31696 * 5 4 3 37 37 H 1.09004 * 110.72046 * 263.59988 * 5 4 3 38 38 H 1.09001 * 109.58700 * 207.43113 * 11 10 8 39 39 H 1.09002 * 109.58396 * 327.84122 * 11 10 8 40 40 H 1.08997 * 109.50056 * 294.98445 * 12 11 10 41 41 H 1.09003 * 109.40734 * 174.99856 * 12 11 10 42 42 H 0.97002 * 120.94392 * 359.90287 * 15 13 12 43 43 H 1.09009 * 109.51869 * 139.52837 * 16 15 13 44 44 H 1.08998 * 109.52091 * 19.34865 * 16 15 13 45 45 H 1.09005 * 109.58058 * 297.94748 * 17 16 15 46 46 H 1.09000 * 109.57765 * 177.54992 * 17 16 15 47 47 H 0.97000 * 119.99787 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.57976 * 14.87437 * 27 18 17 49 49 H 1.09000 * 109.57944 * 254.47554 * 27 18 17 50 50 H 1.09000 * 109.58316 * 69.83336 * 28 10 8 51 51 H 1.08995 * 109.59112 * 190.26639 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.2982 1.3660 -0.8265 5 6 3.4492 -0.0929 -1.3154 6 6 2.0013 -0.6380 -1.2311 7 1 1.4237 -0.3322 -2.1035 8 6 2.0052 -2.1387 -1.0934 9 8 2.1286 -2.6469 0.0009 10 7 1.8715 -2.9160 -2.1862 11 6 1.8205 -2.3401 -3.5459 12 6 3.2573 -2.2070 -4.0726 13 6 3.9457 -3.5457 -3.9992 14 8 3.5622 -4.4682 -4.6868 15 7 4.9967 -3.7109 -3.1600 16 6 5.6453 -5.0305 -3.1129 17 6 5.1489 -5.7907 -1.8815 18 7 3.6774 -5.9051 -1.9530 19 6 3.0681 -6.8887 -2.6853 20 1 3.5460 -7.2757 -3.5730 21 6 1.8359 -7.3885 -2.2866 22 7 1.3468 -7.0695 -1.1069 23 14 0.8717 -8.5136 -3.4241 24 1 1.6344 -8.7171 -4.6819 25 1 0.6565 -9.8237 -2.7588 26 1 -0.4418 -7.8949 -3.7356 27 6 2.8961 -4.9056 -1.1958 28 6 1.7627 -4.3861 -2.0837 29 1 -0.3633 0.5158 -0.8889 30 1 -0.3634 -1.0276 -0.0024 31 1 -0.3634 0.5119 0.8911 32 1 1.2758 2.0562 -0.4571 33 1 2.2122 1.6967 1.0212 34 1 3.2136 2.0430 -1.6765 35 1 4.1467 1.6472 -0.2027 36 1 3.8124 -0.1198 -2.3427 37 1 4.1116 -0.6540 -0.6561 38 1 1.2505 -2.9991 -4.2007 39 1 1.3469 -1.3590 -3.5096 40 1 3.8021 -1.4845 -3.4650 41 1 3.2335 -1.8668 -5.1079 42 1 5.3131 -2.9796 -2.6069 43 1 6.7261 -4.9032 -3.0511 44 1 5.3946 -5.5919 -4.0129 45 1 5.4297 -5.2474 -0.9791 46 1 5.5923 -6.7863 -1.8636 47 1 0.4860 -7.4190 -0.8281 48 1 3.5434 -4.0764 -0.9098 49 1 2.4774 -5.3695 -0.3028 50 1 0.8020 -4.6514 -1.6423 51 1 1.8460 -4.8289 -3.0761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070946103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:35 Heat of formation + Delta-G solvation = -10.835357 kcal Electronic energy + Delta-G solvation = -33448.118704 eV Core-core repulsion = 29384.290818 eV Total energy + Delta-G solvation = -4063.827885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.27173 -39.06286 -37.74368 -35.77692 -35.27334 -33.71548 -32.30990 -31.29331 -30.41804 -30.00684 -28.65027 -26.48368 -25.70116 -24.54612 -23.66432 -22.67966 -21.38420 -20.91015 -20.14026 -19.74223 -18.37475 -17.39474 -16.47989 -16.41687 -16.16478 -15.55267 -15.21956 -15.08666 -14.60080 -14.40442 -14.19012 -13.88698 -13.75144 -13.57909 -13.30011 -13.15951 -12.98709 -12.67330 -12.55879 -12.52131 -12.17273 -11.98472 -11.73173 -11.63447 -11.48852 -11.40616 -11.19309 -11.10573 -11.04802 -10.78939 -10.75202 -10.43269 -10.20016 -9.90471 -9.79398 -9.60842 -9.11749 -9.01742 -8.66915 -8.40427 -8.25824 -7.98168 -6.42290 -5.52387 -3.08561 3.04553 3.25984 3.38299 3.46164 3.54132 3.58444 3.87223 4.05461 4.45456 4.50397 4.62589 4.73296 4.83810 4.92878 5.06765 5.12189 5.23765 5.26745 5.31219 5.41582 5.49830 5.53602 5.56684 5.59639 5.65350 5.66520 5.73098 5.81649 5.88632 5.97954 6.01709 6.08325 6.18380 6.26528 6.53176 6.63262 6.68323 6.77138 6.83705 6.88771 7.01487 7.10678 7.18345 7.60131 7.88422 8.01884 8.12340 8.20476 8.55316 8.81227 8.94339 9.37654 9.96876 10.59735 11.46054 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.004776 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.559216 B = 5861.391674 C = 6654.085498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.497 5.497 3 C 0.037 3.963 4 C -0.128 4.128 5 C -0.112 4.112 6 C 0.044 3.956 7 H 0.068 0.932 8 C 0.520 3.480 9 O -0.506 6.506 10 N -0.618 5.618 11 C 0.116 3.884 12 C -0.163 4.163 13 C 0.521 3.479 14 O -0.518 6.518 15 N -0.721 5.721 16 C 0.088 3.912 17 C 0.127 3.873 18 N -0.588 5.588 19 C -0.222 4.222 20 H 0.062 0.938 21 C 0.001 3.999 22 N -0.901 5.901 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.175 3.825 28 C 0.116 3.884 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.390 0.610 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.051 0.949 47 H 0.249 0.751 48 H 0.028 0.972 49 H 0.062 0.938 50 H 0.056 0.944 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 19.574 -3.035 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.221 5.221 3 C -0.091 4.091 4 C -0.167 4.167 5 C -0.150 4.150 6 C -0.068 4.068 7 H 0.086 0.914 8 C 0.306 3.694 9 O -0.380 6.380 10 N -0.354 5.354 11 C -0.008 4.008 12 C -0.204 4.204 13 C 0.307 3.693 14 O -0.392 6.392 15 N -0.373 5.373 16 C -0.038 4.038 17 C -0.002 4.002 18 N -0.311 5.311 19 C -0.353 4.353 20 H 0.080 0.920 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.050 3.950 28 C -0.004 4.004 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.222 0.778 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.867 18.236 -2.354 18.789 hybrid contribution -0.960 0.311 -1.116 1.505 sum 2.907 18.546 -3.470 19.091 Atomic orbital electron populations 1.22534 0.87400 1.02741 1.00418 1.64419 1.08243 1.13974 1.35481 1.22891 0.95729 0.89572 1.00944 1.22390 0.98054 0.96591 0.99624 1.22501 0.94842 0.95781 1.01859 1.22882 0.97406 0.93789 0.92737 0.91413 1.19871 0.77774 0.87470 0.84315 1.90733 1.47017 1.74555 1.25674 1.49186 1.72274 1.09350 1.04614 1.21823 0.94603 0.99524 0.84876 1.22416 0.98000 0.96682 1.03318 1.20227 0.79957 0.89288 0.79866 1.90741 1.62751 1.42359 1.43353 1.46005 1.33960 1.13743 1.43586 1.22314 0.93959 0.84420 1.03122 1.21446 0.87124 0.97457 0.94133 1.44517 0.98461 1.30844 1.57276 1.18933 1.02132 1.11516 1.02677 0.91999 1.25108 0.99965 0.98865 0.95801 1.70021 1.19240 1.47314 1.18003 0.86316 0.80034 0.80625 0.80523 1.20316 1.21997 1.21931 1.21207 0.90528 0.88684 0.94597 1.22656 1.00463 0.73374 1.03927 0.95618 0.90951 0.91046 0.93778 0.90051 0.91338 0.90585 0.90386 0.89834 0.89244 0.90591 0.90586 0.88356 0.77756 0.92949 0.89677 0.94260 0.93085 0.94038 0.95334 0.91971 0.92540 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.30 60.07 0.56 0.77 16 2 N -0.50 -6.53 4.95 -232.21 -1.15 -7.68 16 3 C 0.04 0.35 6.70 -2.75 -0.02 0.33 16 4 C -0.13 -1.06 6.93 -25.37 -0.18 -1.23 16 5 C -0.11 -1.15 6.21 -24.87 -0.15 -1.30 16 6 C 0.04 0.56 2.14 -66.94 -0.14 0.42 16 7 H 0.07 0.76 5.92 -51.93 -0.31 0.45 16 8 C 0.52 9.13 6.12 -10.99 -0.07 9.06 16 9 O -0.51 -11.27 14.87 5.55 0.08 -11.18 16 10 N -0.62 -10.92 2.42 -171.24 -0.41 -11.34 16 11 C 0.12 1.59 5.60 -3.05 -0.02 1.57 16 12 C -0.16 -2.00 6.20 -27.56 -0.17 -2.18 16 13 C 0.52 8.88 4.75 -10.65 -0.05 8.83 16 14 O -0.52 -11.25 15.07 5.56 0.08 -11.17 16 15 N -0.72 -11.28 4.70 -59.69 -0.28 -11.56 16 16 C 0.09 1.51 6.58 -3.72 -0.02 1.49 16 17 C 0.13 2.58 6.09 -3.35 -0.02 2.55 16 18 N -0.59 -14.49 2.27 -171.17 -0.39 -14.87 16 19 C -0.22 -6.09 8.34 -15.06 -0.13 -6.22 16 20 H 0.06 1.76 7.85 -52.49 -0.41 1.35 16 21 C 0.00 0.02 4.50 -17.43 -0.08 -0.06 16 22 N -0.90 -26.43 10.11 55.49 0.56 -25.87 16 23 Si 0.89 22.61 29.57 -169.99 -5.03 17.59 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 C 0.17 4.30 3.59 -3.33 -0.01 4.29 16 28 C 0.12 2.68 3.91 -3.31 -0.01 2.67 16 29 H 0.03 0.26 8.00 -51.93 -0.42 -0.16 16 30 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.37 7.73 -51.93 -0.40 -0.04 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.64 5.94 -51.93 -0.31 0.33 16 37 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 38 H 0.09 1.34 7.81 -51.93 -0.41 0.94 16 39 H 0.08 0.78 6.03 -51.93 -0.31 0.47 16 40 H 0.08 0.76 5.36 -51.93 -0.28 0.48 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.39 5.08 8.71 -40.82 -0.36 4.72 16 43 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.08 1.70 7.01 -51.93 -0.36 1.34 16 45 H 0.04 0.76 7.76 -51.93 -0.40 0.36 16 46 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.03 0.67 5.77 -51.93 -0.30 0.37 16 49 H 0.06 1.84 6.69 -51.93 -0.35 1.49 16 50 H 0.06 1.48 7.65 -51.93 -0.40 1.08 16 51 H 0.10 2.56 4.68 -51.93 -0.24 2.32 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -34.66 376.48 -9.55 -44.21 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.18 Total: 5.22 kcal Atomic # 6 Polarization: 21.50 SS G_CDS: -0.51 Total: 20.99 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.67 Total: -71.32 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.17 Total: -22.35 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.66 -9.55 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070946103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.370 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds