Wall clock time and date at job start Tue Mar 31 2020 22:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47908 * 110.99897 * 2 1 4 4 C 1.53987 * 107.05770 * 214.15376 * 3 2 1 5 5 C 1.54602 * 105.14081 * 1.22668 * 4 3 2 6 6 C 1.48526 * 111.00213 * 242.60684 * 2 1 3 7 7 H 1.09004 * 110.67023 * 41.28123 * 6 2 1 8 8 C 1.50703 * 110.66586 * 278.15717 * 6 2 1 9 9 O 1.21285 * 119.99662 * 330.87241 * 8 6 2 10 10 N 1.34772 * 120.00245 * 150.87691 * 8 6 2 11 11 C 1.47746 * 121.65329 * 4.65245 * 10 8 6 12 12 C 1.53602 * 108.48230 * 87.79616 * 11 10 8 13 13 C 1.50711 * 109.49157 * 55.02046 * 12 11 10 14 14 O 1.21280 * 120.23614 * 65.68332 * 13 12 11 15 15 N 1.35506 * 119.52072 * 245.65579 * 13 12 11 16 16 C 1.47110 * 118.10850 * 179.97438 * 15 13 12 17 17 C 1.52988 * 109.17621 * 259.43891 * 16 15 13 18 18 N 1.47772 * 108.82053 * 57.74975 * 17 16 15 19 19 C 1.36933 * 121.64207 * 82.98432 * 18 17 16 20 20 H 1.07996 * 120.00637 * 329.55085 * 19 18 17 21 21 C 1.38818 * 119.99885 * 149.55231 * 19 18 17 22 22 N 1.31623 * 119.99584 * 349.73398 * 21 19 18 23 23 Si 1.86796 * 120.00532 * 169.73171 * 21 19 18 24 24 H 1.48501 * 109.46898 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47336 * 119.99859 * 23 21 19 26 26 H 1.48499 * 109.47487 * 240.00125 * 23 21 19 27 27 C 1.47732 * 116.70682 * 263.00777 * 18 17 16 28 28 C 1.47769 * 121.65749 * 184.93160 * 10 8 6 29 29 H 1.09004 * 109.46952 * 59.87660 * 1 2 3 30 30 H 1.08996 * 109.47337 * 179.86774 * 1 2 3 31 31 H 1.08999 * 109.47321 * 299.87655 * 1 2 3 32 32 H 1.08996 * 109.91719 * 333.51186 * 3 2 1 33 33 H 1.08999 * 109.91306 * 94.80077 * 3 2 1 34 34 H 1.08997 * 110.30554 * 120.14205 * 4 3 2 35 35 H 1.08997 * 110.30939 * 242.21012 * 4 3 2 36 36 H 1.09003 * 110.72439 * 140.31696 * 5 4 3 37 37 H 1.09004 * 110.72046 * 263.59988 * 5 4 3 38 38 H 1.09001 * 109.58700 * 207.43113 * 11 10 8 39 39 H 1.09002 * 109.58396 * 327.84122 * 11 10 8 40 40 H 1.08997 * 109.50056 * 294.98445 * 12 11 10 41 41 H 1.09003 * 109.40734 * 174.99856 * 12 11 10 42 42 H 0.97002 * 120.94392 * 359.90287 * 15 13 12 43 43 H 1.09009 * 109.51869 * 139.52837 * 16 15 13 44 44 H 1.08998 * 109.52091 * 19.34865 * 16 15 13 45 45 H 1.09005 * 109.58058 * 297.94748 * 17 16 15 46 46 H 1.09000 * 109.57765 * 177.54992 * 17 16 15 47 47 H 0.97000 * 119.99787 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.57976 * 14.87437 * 27 18 17 49 49 H 1.09000 * 109.57944 * 254.47554 * 27 18 17 50 50 H 1.09000 * 109.58316 * 69.83336 * 28 10 8 51 51 H 1.08995 * 109.59112 * 190.26639 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.2982 1.3660 -0.8265 5 6 3.4492 -0.0929 -1.3154 6 6 2.0013 -0.6380 -1.2311 7 1 1.4237 -0.3322 -2.1035 8 6 2.0052 -2.1387 -1.0934 9 8 2.1286 -2.6469 0.0009 10 7 1.8715 -2.9160 -2.1862 11 6 1.8205 -2.3401 -3.5459 12 6 3.2573 -2.2070 -4.0726 13 6 3.9457 -3.5457 -3.9992 14 8 3.5622 -4.4682 -4.6868 15 7 4.9967 -3.7109 -3.1600 16 6 5.6453 -5.0305 -3.1129 17 6 5.1489 -5.7907 -1.8815 18 7 3.6774 -5.9051 -1.9530 19 6 3.0681 -6.8887 -2.6853 20 1 3.5460 -7.2757 -3.5730 21 6 1.8359 -7.3885 -2.2866 22 7 1.3468 -7.0695 -1.1069 23 14 0.8717 -8.5136 -3.4241 24 1 1.6344 -8.7171 -4.6819 25 1 0.6565 -9.8237 -2.7588 26 1 -0.4418 -7.8949 -3.7356 27 6 2.8961 -4.9056 -1.1958 28 6 1.7627 -4.3861 -2.0837 29 1 -0.3633 0.5158 -0.8889 30 1 -0.3634 -1.0276 -0.0024 31 1 -0.3634 0.5119 0.8911 32 1 1.2758 2.0562 -0.4571 33 1 2.2122 1.6967 1.0212 34 1 3.2136 2.0430 -1.6765 35 1 4.1467 1.6472 -0.2027 36 1 3.8124 -0.1198 -2.3427 37 1 4.1116 -0.6540 -0.6561 38 1 1.2505 -2.9991 -4.2007 39 1 1.3469 -1.3590 -3.5096 40 1 3.8021 -1.4845 -3.4650 41 1 3.2335 -1.8668 -5.1079 42 1 5.3131 -2.9796 -2.6069 43 1 6.7261 -4.9032 -3.0511 44 1 5.3946 -5.5919 -4.0129 45 1 5.4297 -5.2474 -0.9791 46 1 5.5923 -6.7863 -1.8636 47 1 0.4860 -7.4190 -0.8281 48 1 3.5434 -4.0764 -0.9098 49 1 2.4774 -5.3695 -0.3028 50 1 0.8020 -4.6514 -1.6423 51 1 1.8460 -4.8289 -3.0761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070946103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:34 Heat of formation + Delta-G solvation = -38.101959 kcal Electronic energy + Delta-G solvation = -33449.301072 eV Core-core repulsion = 29384.290818 eV Total energy + Delta-G solvation = -4065.010254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54202 -40.33050 -38.94436 -37.58985 -36.71204 -35.29829 -33.24296 -33.06864 -31.89434 -31.30975 -29.97142 -28.24615 -26.63159 -26.21509 -25.07734 -24.11456 -22.52595 -22.00363 -21.73006 -21.14255 -19.62424 -18.76927 -18.27780 -17.63754 -17.54526 -16.85027 -16.59741 -16.44654 -16.27052 -15.67244 -15.55109 -15.29124 -15.10323 -14.86119 -14.66643 -14.55386 -14.42474 -14.17667 -13.90862 -13.57498 -13.38827 -13.21143 -13.10546 -13.00189 -12.92827 -12.79095 -12.52523 -12.42625 -12.26761 -12.23284 -12.01459 -11.94456 -11.84617 -11.77782 -11.59099 -11.42769 -10.70353 -10.51924 -10.44177 -9.86392 -9.55506 -9.30333 -8.49077 -7.68379 -5.27194 1.39513 1.42360 1.52744 1.72744 1.93861 2.06717 2.52361 2.65649 3.09584 3.37875 3.51912 3.67694 3.70246 3.84331 3.96144 4.03242 4.10002 4.19134 4.32675 4.42544 4.43683 4.46432 4.53228 4.59129 4.61735 4.69543 4.72898 4.75283 4.79694 4.83732 4.86956 4.95015 4.99193 5.01387 5.07947 5.09186 5.19091 5.25957 5.31345 5.35286 5.67938 5.76329 5.80640 5.84431 5.94050 6.06615 6.41097 6.69802 6.88588 7.21930 7.41345 7.67006 7.89762 8.48216 9.26311 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.004776 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.559216 B = 5861.391674 C = 6654.085498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.532 5.532 3 C 0.035 3.965 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.052 3.948 7 H 0.097 0.903 8 C 0.518 3.482 9 O -0.565 6.565 10 N -0.618 5.618 11 C 0.111 3.889 12 C -0.151 4.151 13 C 0.510 3.490 14 O -0.571 6.571 15 N -0.715 5.715 16 C 0.102 3.898 17 C 0.119 3.881 18 N -0.600 5.600 19 C -0.213 4.213 20 H 0.051 0.949 21 C -0.046 4.046 22 N -0.928 5.928 23 Si 0.947 3.053 24 H -0.274 1.274 25 H -0.293 1.293 26 H -0.295 1.295 27 C 0.200 3.800 28 C 0.144 3.856 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.406 0.594 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.241 0.759 48 H 0.037 0.963 49 H 0.004 0.996 50 H 0.011 0.989 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 23.717 -4.924 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.092 4.092 4 C -0.158 4.158 5 C -0.148 4.148 6 C -0.059 4.059 7 H 0.114 0.886 8 C 0.306 3.694 9 O -0.442 6.442 10 N -0.353 5.353 11 C -0.012 4.012 12 C -0.191 4.191 13 C 0.297 3.703 14 O -0.449 6.449 15 N -0.367 5.367 16 C -0.025 4.025 17 C -0.007 4.007 18 N -0.324 5.324 19 C -0.344 4.344 20 H 0.068 0.932 21 C -0.241 4.241 22 N -0.576 5.576 23 Si 0.777 3.223 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.222 1.222 27 C 0.075 3.925 28 C 0.021 3.979 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.150 0.850 42 H 0.242 0.758 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.022 0.978 50 H 0.029 0.971 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.355 22.450 -4.265 23.470 hybrid contribution -1.353 -0.966 -0.463 1.726 sum 4.002 21.484 -4.728 22.359 Atomic orbital electron populations 1.22478 0.87258 1.00939 1.02115 1.64312 1.08786 1.16486 1.36182 1.22974 0.96931 0.87702 1.01583 1.22405 0.97364 0.95480 1.00506 1.22567 0.92283 0.96635 1.03303 1.22855 0.99948 0.89324 0.93775 0.88607 1.20886 0.75773 0.89700 0.83029 1.90711 1.49506 1.76054 1.27895 1.49110 1.72150 1.07016 1.07023 1.22130 0.96017 1.01087 0.81918 1.22427 0.96325 0.94315 1.06072 1.21153 0.79631 0.90597 0.78874 1.90726 1.64076 1.44669 1.45439 1.45988 1.33655 1.13553 1.43468 1.21999 0.96450 0.84543 0.99495 1.21683 0.84518 0.98175 0.96352 1.44661 1.00428 1.30579 1.56705 1.18939 1.02080 1.11237 1.02128 0.93151 1.25656 1.01005 1.00581 0.96904 1.70211 1.19110 1.48711 1.19532 0.85487 0.78698 0.78998 0.79140 1.19845 1.21993 1.22217 1.20736 0.90822 0.88204 0.92778 1.21875 0.97438 0.77280 1.01355 0.93163 0.94462 0.90104 0.91736 0.90334 0.88328 0.89852 0.87307 0.92165 0.91024 0.85800 0.87297 0.84974 0.75797 0.88342 0.92559 0.93291 0.93556 0.94919 0.94432 0.97806 0.97053 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.30 127.69 1.19 1.65 16 2 N -0.53 -12.85 4.95 -888.59 -4.40 -17.25 16 3 C 0.04 0.54 6.70 86.44 0.58 1.12 16 4 C -0.12 -1.35 6.93 31.47 0.22 -1.13 16 5 C -0.11 -1.76 6.21 31.80 0.20 -1.56 16 6 C 0.05 1.18 2.14 44.52 0.10 1.27 16 7 H 0.10 1.62 5.92 -2.39 -0.01 1.60 16 8 C 0.52 17.91 6.12 87.66 0.54 18.45 16 9 O -0.56 -26.09 14.87 -3.05 -0.05 -26.14 16 10 N -0.62 -21.66 2.42 -814.07 -1.97 -23.63 16 11 C 0.11 2.72 5.60 86.34 0.48 3.21 16 12 C -0.15 -3.08 6.20 30.05 0.19 -2.90 16 13 C 0.51 16.45 4.75 87.55 0.42 16.86 16 14 O -0.57 -24.75 15.07 -3.03 -0.05 -24.80 16 15 N -0.71 -20.80 4.70 -460.73 -2.16 -22.96 16 16 C 0.10 3.35 6.58 86.26 0.57 3.91 16 17 C 0.12 4.88 6.09 86.13 0.52 5.40 16 18 N -0.60 -30.66 2.27 -695.47 -1.58 -32.24 16 19 C -0.21 -12.13 8.34 84.04 0.70 -11.43 16 20 H 0.05 2.97 7.85 -2.91 -0.02 2.95 16 21 C -0.05 -2.72 4.50 84.86 0.38 -2.34 16 22 N -0.93 -57.86 10.11 21.65 0.22 -57.64 16 23 Si 0.95 48.38 29.57 68.60 2.03 50.41 16 24 H -0.27 -13.64 7.11 99.48 0.71 -12.94 16 25 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 26 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 27 C 0.20 10.34 3.59 86.16 0.31 10.65 16 28 C 0.14 6.96 3.91 86.16 0.34 7.29 16 29 H 0.05 0.85 8.00 -2.38 -0.02 0.83 16 30 H 0.04 1.07 8.00 -2.39 -0.02 1.05 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 0.75 7.73 -2.39 -0.02 0.73 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 1.05 5.94 -2.39 -0.01 1.03 16 37 H 0.06 1.28 8.05 -2.38 -0.02 1.26 16 38 H 0.07 2.06 7.81 -2.39 -0.02 2.04 16 39 H 0.12 1.90 6.03 -2.39 -0.01 1.88 16 40 H 0.11 1.51 5.36 -2.39 -0.01 1.50 16 41 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.41 9.19 8.71 -92.71 -0.81 8.38 16 43 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 44 H 0.06 2.23 7.01 -2.39 -0.02 2.22 16 45 H 0.05 1.89 7.76 -2.38 -0.02 1.87 16 46 H 0.05 1.92 8.13 -2.39 -0.02 1.90 16 47 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.04 1.83 5.77 -2.38 -0.01 1.82 16 49 H 0.00 0.25 6.69 -2.39 -0.02 0.24 16 50 H 0.01 0.63 7.65 -2.39 -0.02 0.61 16 51 H 0.08 4.22 4.68 -2.39 -0.01 4.21 16 Total: -1.00 -85.43 376.48 -1.10 -86.52 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.14 Total: 17.27 kcal Atomic # 6 Polarization: 43.74 SS G_CDS: 6.72 Total: 50.46 kcal Atomic # 7 Polarization: -143.84 SS G_CDS: -9.89 Total: -153.73 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.09 Total: -50.93 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -85.43 -1.10 -86.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070946103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.423 kcal (2) G-P(sol) polarization free energy of solvation -85.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds