Wall clock time and date at job start Tue Mar 31 2020 22:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48557 * 111.00186 * 2 1 4 4 C 1.54381 * 104.59430 * 200.96105 * 3 2 1 5 5 C 1.54262 * 105.05855 * 23.85649 * 4 3 2 6 6 C 1.48567 * 110.99578 * 244.58226 * 2 1 3 7 7 H 1.08993 * 110.51349 * 40.21187 * 6 2 1 8 8 C 1.50703 * 110.41166 * 277.82010 * 6 2 1 9 9 O 1.21284 * 119.99787 * 344.82832 * 8 6 2 10 10 N 1.34769 * 119.99885 * 164.82840 * 8 6 2 11 11 C 1.46505 * 120.00013 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47208 * 179.97438 * 11 10 8 13 13 C 1.53779 * 113.61807 * 185.00200 * 12 11 10 14 14 C 1.53777 * 87.08291 * 220.01926 * 13 12 11 15 15 N 1.46906 * 113.61355 * 139.97936 * 14 13 12 16 16 C 1.46901 * 110.99793 * 156.53011 * 15 14 13 17 17 C 1.50701 * 109.46921 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47268 * 89.99721 * 24 22 20 26 26 H 1.48498 * 109.47211 * 209.99980 * 24 22 20 27 27 H 1.48505 * 109.46734 * 329.99774 * 24 22 20 28 28 C 1.53777 * 87.17337 * 25.38880 * 14 13 12 29 29 H 1.08998 * 109.47131 * 175.42021 * 1 2 3 30 30 H 1.08999 * 109.46615 * 295.41895 * 1 2 3 31 31 H 1.08999 * 109.47317 * 55.41342 * 1 2 3 32 32 H 1.08999 * 110.41231 * 82.18921 * 3 2 1 33 33 H 1.08996 * 110.51303 * 319.78773 * 3 2 1 34 34 H 1.08996 * 110.32731 * 264.95712 * 4 3 2 35 35 H 1.09000 * 110.41018 * 142.79221 * 4 3 2 36 36 H 1.09003 * 110.32177 * 241.10024 * 5 4 3 37 37 H 1.09001 * 110.32598 * 118.90080 * 5 4 3 38 38 H 0.97003 * 119.99897 * 0.02562 * 10 8 6 39 39 H 1.09002 * 109.47015 * 60.00240 * 11 10 8 40 40 H 1.08992 * 109.47058 * 299.99888 * 11 10 8 41 41 H 1.09005 * 112.90818 * 316.25383 * 12 11 10 42 42 H 1.09002 * 113.61685 * 105.46870 * 13 12 11 43 43 H 1.09005 * 113.68505 * 334.57750 * 13 12 11 44 44 H 1.08999 * 113.61414 * 270.79924 * 14 13 12 45 45 H 1.00899 * 110.99995 * 32.57409 * 15 14 13 46 46 H 1.09002 * 109.47401 * 59.99808 * 16 15 14 47 47 H 1.09001 * 109.46874 * 299.99821 * 16 15 14 48 48 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 49 49 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 50 50 H 1.08998 * 113.61610 * 89.15887 * 28 14 13 51 51 H 1.09003 * 113.61672 * 220.05903 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5345 5 6 3.4432 -0.0540 -1.3586 6 6 2.0013 -0.5953 -1.2528 7 1 1.4104 -0.2730 -2.1100 8 6 2.0102 -2.0993 -1.1576 9 8 1.8827 -2.6394 -0.0791 10 7 2.1599 -2.8441 -2.2708 11 6 2.1691 -4.3062 -2.1782 12 6 2.3513 -4.9045 -3.5745 13 6 2.2531 -6.4388 -3.6049 14 6 3.4170 -6.4150 -4.6097 15 7 4.4015 -7.4841 -4.3952 16 6 5.1428 -7.7725 -5.6302 17 6 6.1414 -8.8712 -5.3717 18 8 6.2268 -9.3656 -4.2674 19 7 6.9389 -9.3051 -6.3679 20 6 7.8470 -10.3049 -6.1328 21 1 7.9235 -10.7445 -5.1493 22 6 8.6694 -10.7519 -7.1595 23 7 8.5766 -10.2166 -8.3562 24 14 9.9063 -12.1147 -6.8395 25 1 9.2734 -13.4308 -7.1085 26 1 11.0796 -11.9379 -7.7324 27 1 10.3491 -12.0586 -5.4232 28 6 3.8249 -5.0684 -3.9891 29 1 -0.3633 -1.0244 -0.0821 30 1 -0.3632 0.4411 0.9282 31 1 -0.3634 0.5833 -0.8460 32 1 2.0081 1.7915 1.0121 33 1 1.4105 2.0229 -0.6591 34 1 4.1484 1.1747 0.2933 35 1 3.6955 2.0992 -1.1696 36 1 4.1482 -0.7694 -0.9353 37 1 3.6936 0.1554 -2.3986 38 1 2.2622 -2.4120 -3.1332 39 1 1.2243 -4.6495 -1.7567 40 1 2.9903 -4.6244 -1.5362 41 1 1.7387 -4.4127 -4.3301 42 1 1.3188 -6.8083 -4.0277 43 1 2.5050 -6.9126 -2.6561 44 1 3.0957 -6.3376 -5.6483 45 1 3.9587 -8.3167 -4.0363 46 1 5.6674 -6.8747 -5.9573 47 1 4.4462 -8.0894 -6.4064 48 1 6.8703 -8.9099 -7.2510 49 1 9.1506 -10.5289 -9.0730 50 1 4.5077 -5.1656 -3.1451 51 1 4.1578 -4.3330 -4.7216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100186039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:11 Heat of formation + Delta-G solvation = -73.176313 kcal Electronic energy + Delta-G solvation = -28409.338527 eV Core-core repulsion = 24342.807334 eV Total energy + Delta-G solvation = -4066.531192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28249 -40.46475 -39.81392 -38.80820 -36.21453 -35.76889 -34.45350 -33.24720 -33.14452 -30.91547 -29.01212 -27.67881 -26.63616 -26.59796 -25.72820 -23.46748 -22.35626 -21.88997 -21.24890 -21.09987 -20.23099 -19.85903 -18.39174 -17.83496 -17.31995 -16.87414 -16.83628 -16.55160 -16.35959 -16.03927 -15.81215 -15.68283 -15.28827 -15.20123 -14.97121 -14.74856 -14.62196 -14.21124 -13.98423 -13.55722 -13.50459 -13.33569 -13.29041 -13.01067 -12.96150 -12.77179 -12.59162 -12.44570 -12.40841 -12.33720 -12.12998 -12.04753 -11.79857 -11.64372 -11.53001 -11.50451 -11.14321 -10.74271 -10.32535 -10.05453 -10.01888 -9.46325 -9.28292 -8.47194 -5.96025 1.37705 1.41594 1.54379 1.64105 2.05071 2.08157 2.29291 2.97817 3.10175 3.20111 3.47997 3.56791 3.60579 3.64028 3.77038 3.92781 3.97301 4.00642 4.08999 4.24129 4.27417 4.37377 4.40780 4.45352 4.46099 4.49923 4.55846 4.60651 4.71114 4.75149 4.86754 4.87782 4.92960 4.95373 4.98623 5.01772 5.11183 5.14189 5.23358 5.29916 5.39820 5.41830 5.56021 5.76452 5.94499 5.98338 6.21085 6.44468 6.60181 6.62453 7.12308 7.32128 7.55945 8.11693 8.70116 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.001517 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.312306 B =18452.007431 C =18964.177634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.525 5.525 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.112 4.112 6 C 0.046 3.954 7 H 0.100 0.900 8 C 0.514 3.486 9 O -0.573 6.573 10 N -0.715 5.715 11 C 0.137 3.863 12 C -0.100 4.100 13 C -0.129 4.129 14 C 0.053 3.947 15 N -0.675 5.675 16 C 0.067 3.933 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.275 1.275 28 C -0.121 4.121 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.416 0.584 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.343 0.657 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.066 0.934 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.897 26.530 5.183 32.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.095 4.095 4 C -0.160 4.160 5 C -0.150 4.150 6 C -0.066 4.066 7 H 0.118 0.882 8 C 0.300 3.700 9 O -0.451 6.451 10 N -0.368 5.368 11 C 0.013 3.987 12 C -0.119 4.119 13 C -0.167 4.167 14 C -0.057 4.057 15 N -0.307 5.307 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.200 1.200 28 C -0.159 4.159 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.253 0.747 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.142 0.858 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.163 0.837 46 H 0.120 0.880 47 H 0.086 0.914 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.195 25.883 7.227 31.904 hybrid contribution -0.136 -0.830 -1.619 1.825 sum -17.331 25.053 5.608 30.975 Atomic orbital electron populations 1.22483 0.86942 1.01432 1.02174 1.65028 1.09316 1.16524 1.34085 1.23215 0.95626 0.88428 1.02217 1.22316 0.96253 0.97471 0.99912 1.22288 0.92732 0.97375 1.02644 1.22701 0.99353 0.90394 0.94172 0.88195 1.20892 0.75367 0.90049 0.83668 1.90698 1.50042 1.74606 1.29711 1.45894 1.73885 1.06814 1.10181 1.21215 1.00942 0.79369 0.97172 1.22560 0.97721 0.95716 0.95887 1.23147 0.98280 0.95745 0.99569 1.23200 0.91430 0.92252 0.98806 1.60257 1.29575 1.12885 1.27993 1.21580 0.95412 0.96896 0.92698 1.20986 0.85139 0.86859 0.84711 1.90493 1.73207 1.62194 1.25339 1.41932 1.33263 1.33959 1.11848 1.19670 1.14860 1.14234 0.97833 0.90480 1.26021 0.99880 1.00846 0.94386 1.69669 1.40828 1.43518 1.01978 0.84932 0.77497 0.77825 0.78100 1.19555 1.19425 1.19980 1.23169 0.95725 0.96341 1.00679 0.93109 0.90478 0.93367 0.89753 0.91763 0.91520 0.88484 0.92635 0.87568 0.74739 0.92212 0.93597 0.85754 0.89515 0.90449 0.89282 0.83732 0.88017 0.91417 0.76922 0.91266 0.91515 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.44 127.69 1.21 1.46 16 2 N -0.52 -8.82 4.92 -887.03 -4.36 -13.18 16 3 C 0.03 0.35 6.49 86.45 0.56 0.91 16 4 C -0.12 -1.14 7.00 31.49 0.22 -0.92 16 5 C -0.11 -1.25 6.54 31.49 0.21 -1.04 16 6 C 0.05 0.63 2.68 44.31 0.12 0.75 16 7 H 0.10 0.82 7.97 -2.39 -0.02 0.81 16 8 C 0.51 10.56 6.72 87.66 0.59 11.15 16 9 O -0.57 -17.97 16.56 -3.04 -0.05 -18.02 16 10 N -0.71 -10.54 5.56 -463.07 -2.57 -13.11 16 11 C 0.14 2.45 5.51 86.38 0.48 2.92 16 12 C -0.10 -1.38 3.75 -10.21 -0.04 -1.41 16 13 C -0.13 -2.24 7.23 31.12 0.22 -2.02 16 14 C 0.05 1.10 4.12 45.44 0.19 1.29 16 15 N -0.67 -20.98 6.18 -492.85 -3.04 -24.03 16 16 C 0.07 2.25 6.02 85.56 0.52 2.77 16 17 C 0.44 20.94 7.82 87.66 0.69 21.63 16 18 O -0.63 -35.40 15.78 -3.07 -0.05 -35.45 16 19 N -0.57 -29.60 5.29 -306.98 -1.62 -31.22 16 20 C -0.34 -19.33 9.68 84.04 0.81 -18.51 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 23 N -0.92 -49.50 13.05 21.66 0.28 -49.22 16 24 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C -0.12 -2.25 7.45 31.18 0.23 -2.02 16 29 H 0.05 0.90 7.96 -2.39 -0.02 0.88 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.45 7.98 -2.39 -0.02 0.44 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.45 7.91 -2.39 -0.02 0.44 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.05 0.89 7.85 -2.39 -0.02 0.87 16 37 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.42 3.20 8.47 -92.71 -0.79 2.42 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.08 7.85 -2.39 -0.02 1.06 16 41 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.63 8.10 -2.38 -0.02 1.61 16 44 H 0.09 1.58 7.88 -2.39 -0.02 1.56 16 45 H 0.34 11.38 8.26 -89.69 -0.74 10.64 16 46 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 47 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 48 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 49 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 50 H 0.07 1.63 7.90 -2.39 -0.02 1.61 16 51 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -78.28 415.21 -4.24 -82.52 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -1.31 Total: 39.71 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 6.46 Total: 16.80 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -11.32 Total: -130.76 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.10 Total: -53.47 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -78.28 -4.24 -82.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100186039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.340 kcal (2) G-P(sol) polarization free energy of solvation -78.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds