Wall clock time and date at job start Tue Mar 31 2020 21:33:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46900 * 109.46721 * 2 1
4 4 C 1.46904 * 111.00064 * 297.55027 * 3 2 1
5 5 C 1.52999 * 109.47334 * 288.27647 * 4 3 2
6 6 C 1.46889 * 111.00304 * 61.51063 * 3 2 1
7 7 C 1.50696 * 109.47442 * 66.04508 * 6 3 2
8 8 O 1.21287 * 119.99824 * 359.97438 * 7 6 3
9 9 N 1.34774 * 120.00559 * 180.02562 * 7 6 3
10 10 C 1.46500 * 120.00282 * 179.97438 * 9 7 6
11 11 H 1.08999 * 110.85675 * 34.30276 * 10 9 7
12 12 C 1.54625 * 110.97008 * 270.50984 * 10 9 7
13 13 C 1.51287 * 104.19434 * 266.64056 * 12 10 9
14 14 O 1.21288 * 124.93872 * 163.77955 * 13 12 10
15 15 N 1.34417 * 110.11812 * 343.75159 * 13 12 10
16 16 C 1.46497 * 124.34965 * 179.57034 * 15 13 12
17 17 C 1.53948 * 113.74249 * 38.71661 * 16 15 13
18 18 N 1.47815 * 86.03759 * 222.08327 * 17 16 15
19 19 C 1.36934 * 134.45949 * 204.64287 * 18 17 16
20 20 H 1.08000 * 119.99757 * 179.85998 * 19 18 17
21 21 C 1.38811 * 120.00106 * 359.86938 * 19 18 17
22 22 N 1.31618 * 119.99502 * 359.97438 * 21 19 18
23 23 Si 1.86795 * 120.00414 * 179.97438 * 21 19 18
24 24 H 1.48503 * 109.46953 * 59.99215 * 23 21 19
25 25 H 1.48495 * 109.47308 * 179.97438 * 23 21 19
26 26 H 1.48500 * 109.47138 * 299.99635 * 23 21 19
27 27 C 1.47584 * 91.05007 * 24.54564 * 18 17 16
28 28 C 1.46761 * 111.29983 * 359.58824 * 15 13 12
29 29 H 1.09006 * 109.47466 * 61.26883 * 1 2 3
30 30 H 1.09001 * 109.47216 * 181.26705 * 1 2 3
31 31 H 1.09000 * 109.47819 * 301.26710 * 1 2 3
32 32 H 1.09000 * 109.47050 * 240.00095 * 2 1 3
33 33 H 1.08994 * 109.46990 * 119.99743 * 2 1 3
34 34 H 1.09002 * 109.46661 * 48.27494 * 4 3 2
35 35 H 1.09002 * 109.47016 * 168.27323 * 4 3 2
36 36 H 1.08999 * 109.47155 * 59.87544 * 5 4 3
37 37 H 1.08998 * 109.47019 * 179.87697 * 5 4 3
38 38 H 1.09000 * 109.46750 * 299.87294 * 5 4 3
39 39 H 1.09005 * 109.47298 * 306.04116 * 6 3 2
40 40 H 1.09003 * 109.47337 * 186.04721 * 6 3 2
41 41 H 0.97005 * 119.99845 * 359.97438 * 9 7 6
42 42 H 1.08996 * 110.48919 * 25.31617 * 12 10 9
43 43 H 1.08996 * 110.48729 * 147.83660 * 12 10 9
44 44 H 1.09003 * 112.94155 * 170.30449 * 16 15 13
45 45 H 1.09002 * 113.76868 * 336.34403 * 17 16 15
46 46 H 1.08997 * 113.77454 * 107.74360 * 17 16 15
47 47 H 0.97008 * 119.99711 * 180.02562 * 22 21 19
48 48 H 1.09000 * 113.76996 * 221.15576 * 27 18 17
49 49 H 1.08998 * 113.77104 * 89.75377 * 27 18 17
50 50 H 1.09001 * 110.24563 * 258.01809 * 28 15 13
51 51 H 1.08997 * 110.24711 * 136.01781 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0195 1.3850 0.0000
4 6 1.5969 2.0928 -1.2159
5 6 2.3837 1.5606 -2.4154
6 6 1.5783 2.0994 1.2052
7 6 2.2308 1.4885 2.4185
8 8 2.9886 0.5500 2.2916
9 7 1.9717 1.9844 3.6446
10 6 2.6057 1.3901 4.8241
11 1 3.6116 1.0418 4.5900
12 6 1.7421 0.2427 5.3975
13 6 0.8923 0.9112 6.4557
14 8 -0.1078 0.4329 6.9477
15 7 1.4072 2.1120 6.7716
16 6 0.8255 3.0276 7.7562
17 6 0.2550 2.3205 8.9990
18 7 -0.8816 3.2586 8.8845
19 6 -1.8016 3.7626 9.7647
20 1 -2.5539 4.4570 9.4208
21 6 -1.7671 3.3813 11.0990
22 7 -0.8503 2.5349 11.5179
23 14 -3.0216 4.0694 12.2998
24 1 -4.3886 3.6966 11.8553
25 1 -2.7713 3.5093 13.6522
26 1 -2.9025 5.5488 12.3465
27 6 -0.6252 3.4357 7.4420
28 6 2.6267 2.3880 6.0032
29 1 -0.3634 0.4940 -0.9012
30 1 -0.3634 -1.0274 0.0227
31 1 -0.3635 0.5334 0.8784
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 0.5315 1.9302 -1.3792
35 1 1.7881 3.1597 -1.1003
36 1 2.1942 0.4933 -2.5296
37 1 2.0686 2.0843 -3.3179
38 1 3.4489 1.7253 -2.2531
39 1 0.4949 2.0217 1.2975
40 1 1.8621 3.1491 1.1298
41 1 1.3654 2.7347 3.7462
42 1 1.1128 -0.1872 4.6183
43 1 2.3749 -0.5251 5.8426
44 1 1.4772 3.8693 7.9907
45 1 -0.0160 1.2789 8.8262
46 1 0.8539 2.4618 9.8987
47 1 -0.8264 2.2681 12.4503
48 1 -0.7277 4.4658 7.1008
49 1 -1.1553 2.7225 6.8108
50 1 3.5083 2.2219 6.6223
51 1 2.6140 3.4123 5.6307
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001108580293.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:33:06
Heat of formation + Delta-G solvation = 12.836646 kcal
Electronic energy + Delta-G solvation = -30204.499757 eV
Core-core repulsion = 26141.698367 eV
Total energy + Delta-G solvation = -4062.801390 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.84794 -39.87849 -38.05368 -37.17350 -36.29386 -33.95542 -32.23879 -31.79190
-31.00727 -30.04311 -27.63858 -27.30789 -26.26235 -24.75391 -24.23504 -23.43121
-22.04362 -20.87431 -20.46680 -20.08146 -18.30442 -17.38285 -17.00300 -16.74514
-16.62094 -16.30780 -16.09739 -15.36511 -14.99452 -14.82875 -14.62409 -14.23781
-14.09984 -13.88645 -13.51559 -13.45454 -13.34878 -13.09161 -12.97263 -12.60441
-12.47683 -12.30820 -12.26587 -11.93706 -11.79019 -11.77794 -11.71498 -11.42272
-11.39017 -11.32842 -10.87693 -10.83820 -10.72213 -10.21746 -10.01556 -9.94033
-9.58337 -9.50493 -9.14514 -8.66873 -8.60750 -8.19252 -6.82876 -5.73047
-3.05256 2.40089 2.70137 2.94252 3.24704 3.41732 3.46235 3.47385
3.64517 4.23083 4.43091 4.48906 4.50456 4.55170 4.70899 4.76741
4.84645 4.91104 4.95723 5.03289 5.05033 5.13601 5.20874 5.22943
5.33602 5.36279 5.41852 5.52726 5.55667 5.60058 5.65031 5.65744
5.70143 5.74843 5.80527 5.84075 6.03411 6.23078 6.26031 6.49158
6.56095 6.58985 6.72685 6.86208 7.24008 7.28011 7.49138 7.57743
7.62614 8.00234 8.00726 8.56319 9.07302 9.73668 10.62587 11.44056
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.023531 B = 0.002157 C = 0.002101
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1189.636354 B =12977.131765 C =13323.935816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.040 3.960
3 N -0.518 5.518
4 C 0.044 3.956
5 C -0.146 4.146
6 C 0.029 3.971
7 C 0.518 3.482
8 O -0.519 6.519
9 N -0.724 5.724
10 C 0.136 3.864
11 H 0.116 0.884
12 C -0.166 4.166
13 C 0.512 3.488
14 O -0.510 6.510
15 N -0.609 5.609
16 C 0.099 3.901
17 C 0.153 3.847
18 N -0.605 5.605
19 C -0.222 4.222
20 H 0.079 0.921
21 C -0.008 4.008
22 N -0.919 5.919
23 Si 0.914 3.086
24 H -0.285 1.285
25 H -0.290 1.290
26 H -0.284 1.284
27 C 0.112 3.888
28 C 0.095 3.905
29 H 0.056 0.944
30 H 0.063 0.937
31 H 0.055 0.945
32 H 0.076 0.924
33 H 0.096 0.904
34 H 0.041 0.959
35 H 0.072 0.928
36 H 0.055 0.945
37 H 0.057 0.943
38 H 0.063 0.937
39 H 0.070 0.930
40 H 0.104 0.896
41 H 0.403 0.597
42 H 0.099 0.901
43 H 0.110 0.890
44 H 0.105 0.895
45 H 0.056 0.944
46 H 0.070 0.930
47 H 0.254 0.746
48 H 0.041 0.959
49 H 0.038 0.962
50 H 0.086 0.914
51 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.063 -0.097 -25.585 27.493
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.255 4.255
2 C -0.087 4.087
3 N -0.242 5.242
4 C -0.084 4.084
5 C -0.204 4.204
6 C -0.103 4.103
7 C 0.304 3.696
8 O -0.394 6.394
9 N -0.377 5.377
10 C 0.031 3.969
11 H 0.133 0.867
12 C -0.208 4.208
13 C 0.298 3.702
14 O -0.385 6.385
15 N -0.345 5.345
16 C -0.004 4.004
17 C 0.027 3.973
18 N -0.331 5.331
19 C -0.349 4.349
20 H 0.097 0.903
21 C -0.205 4.205
22 N -0.566 5.566
23 Si 0.744 3.256
24 H -0.212 1.212
25 H -0.215 1.215
26 H -0.211 1.211
27 C -0.015 4.015
28 C -0.029 4.029
29 H 0.075 0.925
30 H 0.082 0.918
31 H 0.074 0.926
32 H 0.095 0.905
33 H 0.114 0.886
34 H 0.059 0.941
35 H 0.091 0.909
36 H 0.074 0.926
37 H 0.076 0.924
38 H 0.082 0.918
39 H 0.087 0.913
40 H 0.122 0.878
41 H 0.238 0.762
42 H 0.117 0.883
43 H 0.128 0.872
44 H 0.123 0.877
45 H 0.074 0.926
46 H 0.088 0.912
47 H 0.064 0.936
48 H 0.059 0.941
49 H 0.056 0.944
50 H 0.104 0.896
51 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 10.418 -0.955 -25.024 27.123
hybrid contribution -1.974 0.750 0.745 2.239
sum 8.444 -0.205 -24.280 25.707
Atomic orbital electron populations
1.22468 0.98593 1.02742 1.01685 1.22382 0.92245 0.89679 1.04442
1.61957 1.59496 1.02427 1.00277 1.22183 0.97887 0.98265 0.90021
1.21747 1.01158 1.01168 0.96295 1.22041 0.99047 0.99430 0.89734
1.20498 0.81626 0.83528 0.83933 1.90680 1.35445 1.27440 1.85848
1.46026 1.49116 1.36863 1.05687 1.21820 0.98005 0.92842 0.84277
0.86654 1.22817 0.99954 0.98886 0.99129 1.20698 0.84918 0.81508
0.83051 1.90790 1.24958 1.67205 1.55531 1.48535 1.25957 1.18890
1.41078 1.24050 0.93635 0.92862 0.89851 1.22785 0.87434 0.94336
0.92759 1.45697 1.34869 1.50434 1.02106 1.18924 1.07196 1.20683
0.88142 0.90287 1.24806 0.99193 0.99441 0.97014 1.69821 1.35369
1.36046 1.15332 0.86177 0.80805 0.78275 0.80346 1.21188 1.21542
1.21084 1.22905 0.92027 0.97727 0.88838 1.22343 0.89247 0.99449
0.91889 0.92485 0.91766 0.92602 0.90536 0.88551 0.94061 0.90901
0.92634 0.92372 0.91795 0.91270 0.87829 0.76223 0.88305 0.87151
0.87687 0.92606 0.91178 0.93583 0.94078 0.94409 0.89638 0.89863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.47 9.28 37.16 0.34 -1.12 16
2 C 0.04 0.35 5.57 -3.83 -0.02 0.32 16
3 N -0.52 -4.29 4.41 -236.08 -1.04 -5.33 16
4 C 0.04 0.28 5.55 -3.82 -0.02 0.26 16
5 C -0.15 -0.87 9.96 37.16 0.37 -0.50 16
6 C 0.03 0.21 5.22 -4.98 -0.03 0.18 16
7 C 0.52 4.90 7.54 -10.99 -0.08 4.82 16
8 O -0.52 -6.66 14.01 5.55 0.08 -6.58 16
9 N -0.72 -5.92 5.14 -52.23 -0.27 -6.19 16
10 C 0.14 1.23 3.48 -66.30 -0.23 1.00 16
11 H 0.12 1.00 7.63 -51.93 -0.40 0.60 16
12 C -0.17 -1.94 6.59 -26.74 -0.18 -2.12 16
13 C 0.51 8.42 7.42 -10.86 -0.08 8.34 16
14 O -0.51 -11.25 14.61 5.55 0.08 -11.17 16
15 N -0.61 -8.90 3.15 -166.63 -0.53 -9.43 16
16 C 0.10 1.82 4.81 -70.14 -0.34 1.48 16
17 C 0.15 3.78 6.90 -2.84 -0.02 3.76 16
18 N -0.60 -16.15 3.70 -177.86 -0.66 -16.81 16
19 C -0.22 -6.42 10.70 -15.06 -0.16 -6.58 16
20 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16
21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16
22 N -0.92 -28.10 11.39 55.49 0.63 -27.47 16
23 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16
24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
27 C 0.11 2.37 8.44 -2.97 -0.03 2.35 16
28 C 0.10 0.89 6.97 -3.12 -0.02 0.87 16
29 H 0.06 0.38 6.29 -51.93 -0.33 0.06 16
30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.06 0.44 6.25 -51.93 -0.32 0.12 16
32 H 0.08 0.62 6.60 -51.93 -0.34 0.28 16
33 H 0.10 1.05 5.86 -51.93 -0.30 0.75 16
34 H 0.04 0.25 5.89 -51.93 -0.31 -0.06 16
35 H 0.07 0.40 7.81 -51.93 -0.41 -0.01 16
36 H 0.05 0.34 6.71 -51.93 -0.35 0.00 16
37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
39 H 0.07 0.45 6.02 -51.93 -0.31 0.14 16
40 H 0.10 0.56 7.86 -51.93 -0.41 0.15 16
41 H 0.40 2.72 8.62 -40.82 -0.35 2.37 16
42 H 0.10 1.20 8.09 -51.93 -0.42 0.78 16
43 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16
44 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16
45 H 0.06 1.54 5.72 -51.93 -0.30 1.24 16
46 H 0.07 1.88 7.17 -51.93 -0.37 1.51 16
47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16
48 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16
49 H 0.04 0.85 7.25 -51.93 -0.38 0.48 16
50 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
51 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16
LS Contribution 396.16 15.07 5.97 5.97
Total: -1.00 -36.74 396.16 -9.56 -46.29
By element:
Atomic # 1 Polarization: 8.57 SS G_CDS: -8.22 Total: 0.35 kcal
Atomic # 6 Polarization: 13.33 SS G_CDS: -0.58 Total: 12.75 kcal
Atomic # 7 Polarization: -63.36 SS G_CDS: -1.86 Total: -65.22 kcal
Atomic # 8 Polarization: -17.91 SS G_CDS: 0.16 Total: -17.75 kcal
Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -36.74 -9.56 -46.29 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001108580293.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.131 kcal
(2) G-P(sol) polarization free energy of solvation -36.738 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.837 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds