Wall clock time and date at job start Tue Mar 31 2020 21:33:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46900 * 109.46721 * 2 1
4 4 C 1.46904 * 111.00064 * 297.55027 * 3 2 1
5 5 C 1.52999 * 109.47334 * 288.27647 * 4 3 2
6 6 C 1.46889 * 111.00304 * 61.51063 * 3 2 1
7 7 C 1.50696 * 109.47442 * 66.04508 * 6 3 2
8 8 O 1.21287 * 119.99824 * 359.97438 * 7 6 3
9 9 N 1.34774 * 120.00559 * 180.02562 * 7 6 3
10 10 C 1.46500 * 120.00282 * 179.97438 * 9 7 6
11 11 H 1.08999 * 110.85675 * 34.30276 * 10 9 7
12 12 C 1.54625 * 110.97008 * 270.50984 * 10 9 7
13 13 C 1.51287 * 104.19434 * 266.64056 * 12 10 9
14 14 O 1.21288 * 124.93872 * 163.77955 * 13 12 10
15 15 N 1.34417 * 110.11812 * 343.75159 * 13 12 10
16 16 C 1.46497 * 124.34965 * 179.57034 * 15 13 12
17 17 C 1.53948 * 113.74249 * 38.71661 * 16 15 13
18 18 N 1.47815 * 86.03759 * 222.08327 * 17 16 15
19 19 C 1.36934 * 134.45949 * 204.64287 * 18 17 16
20 20 H 1.08000 * 119.99757 * 179.85998 * 19 18 17
21 21 C 1.38811 * 120.00106 * 359.86938 * 19 18 17
22 22 N 1.31618 * 119.99502 * 359.97438 * 21 19 18
23 23 Si 1.86795 * 120.00414 * 179.97438 * 21 19 18
24 24 H 1.48503 * 109.46953 * 59.99215 * 23 21 19
25 25 H 1.48495 * 109.47308 * 179.97438 * 23 21 19
26 26 H 1.48500 * 109.47138 * 299.99635 * 23 21 19
27 27 C 1.47584 * 91.05007 * 24.54564 * 18 17 16
28 28 C 1.46761 * 111.29983 * 359.58824 * 15 13 12
29 29 H 1.09006 * 109.47466 * 61.26883 * 1 2 3
30 30 H 1.09001 * 109.47216 * 181.26705 * 1 2 3
31 31 H 1.09000 * 109.47819 * 301.26710 * 1 2 3
32 32 H 1.09000 * 109.47050 * 240.00095 * 2 1 3
33 33 H 1.08994 * 109.46990 * 119.99743 * 2 1 3
34 34 H 1.09002 * 109.46661 * 48.27494 * 4 3 2
35 35 H 1.09002 * 109.47016 * 168.27323 * 4 3 2
36 36 H 1.08999 * 109.47155 * 59.87544 * 5 4 3
37 37 H 1.08998 * 109.47019 * 179.87697 * 5 4 3
38 38 H 1.09000 * 109.46750 * 299.87294 * 5 4 3
39 39 H 1.09005 * 109.47298 * 306.04116 * 6 3 2
40 40 H 1.09003 * 109.47337 * 186.04721 * 6 3 2
41 41 H 0.97005 * 119.99845 * 359.97438 * 9 7 6
42 42 H 1.08996 * 110.48919 * 25.31617 * 12 10 9
43 43 H 1.08996 * 110.48729 * 147.83660 * 12 10 9
44 44 H 1.09003 * 112.94155 * 170.30449 * 16 15 13
45 45 H 1.09002 * 113.76868 * 336.34403 * 17 16 15
46 46 H 1.08997 * 113.77454 * 107.74360 * 17 16 15
47 47 H 0.97008 * 119.99711 * 180.02562 * 22 21 19
48 48 H 1.09000 * 113.76996 * 221.15576 * 27 18 17
49 49 H 1.08998 * 113.77104 * 89.75377 * 27 18 17
50 50 H 1.09001 * 110.24563 * 258.01809 * 28 15 13
51 51 H 1.08997 * 110.24711 * 136.01781 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0195 1.3850 0.0000
4 6 1.5969 2.0928 -1.2159
5 6 2.3837 1.5606 -2.4154
6 6 1.5783 2.0994 1.2052
7 6 2.2308 1.4885 2.4185
8 8 2.9886 0.5500 2.2916
9 7 1.9717 1.9844 3.6446
10 6 2.6057 1.3901 4.8241
11 1 3.6116 1.0418 4.5900
12 6 1.7421 0.2427 5.3975
13 6 0.8923 0.9112 6.4557
14 8 -0.1078 0.4329 6.9477
15 7 1.4072 2.1120 6.7716
16 6 0.8255 3.0276 7.7562
17 6 0.2550 2.3205 8.9990
18 7 -0.8816 3.2586 8.8845
19 6 -1.8016 3.7626 9.7647
20 1 -2.5539 4.4570 9.4208
21 6 -1.7671 3.3813 11.0990
22 7 -0.8503 2.5349 11.5179
23 14 -3.0216 4.0694 12.2998
24 1 -4.3886 3.6966 11.8553
25 1 -2.7713 3.5093 13.6522
26 1 -2.9025 5.5488 12.3465
27 6 -0.6252 3.4357 7.4420
28 6 2.6267 2.3880 6.0032
29 1 -0.3634 0.4940 -0.9012
30 1 -0.3634 -1.0274 0.0227
31 1 -0.3635 0.5334 0.8784
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 0.5315 1.9302 -1.3792
35 1 1.7881 3.1597 -1.1003
36 1 2.1942 0.4933 -2.5296
37 1 2.0686 2.0843 -3.3179
38 1 3.4489 1.7253 -2.2531
39 1 0.4949 2.0217 1.2975
40 1 1.8621 3.1491 1.1298
41 1 1.3654 2.7347 3.7462
42 1 1.1128 -0.1872 4.6183
43 1 2.3749 -0.5251 5.8426
44 1 1.4772 3.8693 7.9907
45 1 -0.0160 1.2789 8.8262
46 1 0.8539 2.4618 9.8987
47 1 -0.8264 2.2681 12.4503
48 1 -0.7277 4.4658 7.1008
49 1 -1.1553 2.7225 6.8108
50 1 3.5083 2.2219 6.6223
51 1 2.6140 3.4123 5.6307
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001108580293.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:33:05
Heat of formation + Delta-G solvation = -15.630220 kcal
Electronic energy + Delta-G solvation = -30205.734173 eV
Core-core repulsion = 26141.698367 eV
Total energy + Delta-G solvation = -4064.035806 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.93320 -40.79358 -39.09275 -38.52816 -37.45735 -35.06849 -34.12034 -32.35361
-32.00220 -30.92602 -29.18878 -28.50530 -26.98676 -26.60863 -25.23089 -24.77861
-22.87362 -22.10213 -21.60140 -20.75449 -19.72315 -18.80200 -18.11530 -17.79474
-17.68133 -17.19991 -16.96885 -16.76360 -16.33570 -15.87761 -15.74461 -15.55930
-15.16629 -14.93350 -14.79976 -14.55818 -14.19427 -14.13895 -13.91433 -13.71671
-13.41225 -13.39976 -13.18136 -13.04541 -12.87814 -12.85045 -12.73950 -12.70957
-12.66441 -12.47118 -12.31839 -12.01503 -11.92689 -11.90880 -11.51829 -11.45201
-11.04964 -10.70610 -10.61477 -10.06161 -9.55345 -9.17435 -8.94326 -7.92746
-5.27368 1.42470 1.47547 1.53562 1.61550 1.69787 1.98238 2.08075
2.48379 3.07821 3.25273 3.36973 3.47083 3.48897 3.80236 3.83710
3.90815 4.02377 4.15084 4.25257 4.27098 4.31151 4.39361 4.40684
4.50571 4.53461 4.60443 4.63918 4.70339 4.71718 4.78640 4.81737
4.85856 4.90115 4.93653 5.02574 5.12860 5.18856 5.21790 5.23487
5.25950 5.46431 5.47787 5.52376 5.86159 5.89850 6.02443 6.17566
6.27974 6.59743 6.87656 7.26265 7.32211 7.57394 8.52860 9.24278
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.023531 B = 0.002157 C = 0.002101
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1189.636354 B =12977.131765 C =13323.935816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.044 3.956
3 N -0.533 5.533
4 C 0.044 3.956
5 C -0.144 4.144
6 C 0.030 3.970
7 C 0.518 3.482
8 O -0.555 6.555
9 N -0.715 5.715
10 C 0.150 3.850
11 H 0.130 0.870
12 C -0.155 4.155
13 C 0.502 3.498
14 O -0.577 6.577
15 N -0.605 5.605
16 C 0.138 3.862
17 C 0.146 3.854
18 N -0.636 5.636
19 C -0.237 4.237
20 H 0.087 0.913
21 C -0.071 4.071
22 N -0.955 5.955
23 Si 0.985 3.015
24 H -0.281 1.281
25 H -0.294 1.294
26 H -0.267 1.267
27 C 0.116 3.884
28 C 0.096 3.904
29 H 0.067 0.933
30 H 0.061 0.939
31 H 0.051 0.949
32 H 0.077 0.923
33 H 0.071 0.929
34 H 0.046 0.954
35 H 0.086 0.914
36 H 0.048 0.952
37 H 0.072 0.928
38 H 0.053 0.947
39 H 0.079 0.921
40 H 0.128 0.872
41 H 0.413 0.587
42 H 0.093 0.907
43 H 0.124 0.876
44 H 0.138 0.862
45 H 0.020 0.980
46 H 0.040 0.960
47 H 0.248 0.752
48 H 0.072 0.928
49 H 0.022 0.978
50 H 0.109 0.891
51 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.929 2.285 -27.597 29.770
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C -0.084 4.084
3 N -0.257 5.257
4 C -0.083 4.083
5 C -0.202 4.202
6 C -0.101 4.101
7 C 0.305 3.695
8 O -0.433 6.433
9 N -0.369 5.369
10 C 0.044 3.956
11 H 0.148 0.852
12 C -0.196 4.196
13 C 0.291 3.709
14 O -0.456 6.456
15 N -0.338 5.338
16 C 0.034 3.966
17 C 0.020 3.980
18 N -0.363 5.363
19 C -0.365 4.365
20 H 0.104 0.896
21 C -0.264 4.264
22 N -0.603 5.603
23 Si 0.812 3.188
24 H -0.208 1.208
25 H -0.220 1.220
26 H -0.193 1.193
27 C -0.011 4.011
28 C -0.026 4.026
29 H 0.086 0.914
30 H 0.080 0.920
31 H 0.070 0.930
32 H 0.095 0.905
33 H 0.089 0.911
34 H 0.064 0.936
35 H 0.104 0.896
36 H 0.067 0.933
37 H 0.090 0.910
38 H 0.072 0.928
39 H 0.096 0.904
40 H 0.146 0.854
41 H 0.249 0.751
42 H 0.111 0.889
43 H 0.142 0.858
44 H 0.155 0.845
45 H 0.038 0.962
46 H 0.058 0.942
47 H 0.057 0.943
48 H 0.090 0.910
49 H 0.040 0.960
50 H 0.127 0.873
51 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 11.319 1.480 -27.105 29.411
hybrid contribution -2.232 -0.042 1.285 2.576
sum 9.087 1.439 -25.821 27.411
Atomic orbital electron populations
1.22403 0.97788 1.02720 1.01937 1.22239 0.92811 0.90143 1.03184
1.61943 1.60086 1.02361 1.01330 1.22247 0.98130 0.98746 0.89194
1.21735 1.00539 1.00997 0.96908 1.22115 0.99283 1.00305 0.88389
1.20907 0.80997 0.82904 0.84672 1.90676 1.37188 1.29037 1.86377
1.45978 1.48945 1.36831 1.05140 1.21745 0.97928 0.91580 0.84373
0.85229 1.22767 0.99535 0.99877 0.97419 1.21534 0.84321 0.81894
0.83189 1.90759 1.28101 1.68826 1.57942 1.48473 1.27311 1.17745
1.40306 1.23350 0.93305 0.92593 0.87336 1.22595 0.87714 0.92955
0.94755 1.46146 1.35027 1.50597 1.04489 1.19397 1.07659 1.20462
0.88994 0.89574 1.25749 1.01426 1.00234 0.98986 1.70044 1.37314
1.37787 1.15173 0.85066 0.78107 0.78268 0.77352 1.20754 1.22033
1.19279 1.22988 0.93382 0.98900 0.85788 1.22693 0.87186 1.01229
0.91452 0.91427 0.91967 0.93033 0.90509 0.91090 0.93551 0.89599
0.93257 0.90951 0.92767 0.90353 0.85380 0.75066 0.88875 0.85817
0.84490 0.96213 0.94167 0.94290 0.91043 0.95983 0.87319 0.86672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.64 9.28 71.98 0.67 -1.97 16
2 C 0.04 0.73 5.57 86.30 0.48 1.21 16
3 N -0.53 -7.91 4.41 -900.82 -3.97 -11.87 16
4 C 0.04 0.46 5.55 86.30 0.48 0.94 16
5 C -0.14 -1.48 9.96 71.98 0.72 -0.76 16
6 C 0.03 0.36 5.22 85.56 0.45 0.80 16
7 C 0.52 8.68 7.54 87.66 0.66 9.34 16
8 O -0.56 -13.52 14.01 -3.05 -0.04 -13.56 16
9 N -0.72 -9.56 5.14 -437.53 -2.25 -11.81 16
10 C 0.15 2.25 3.48 46.05 0.16 2.41 16
11 H 0.13 1.78 7.63 -2.39 -0.02 1.76 16
12 C -0.15 -3.42 6.59 30.59 0.20 -3.22 16
13 C 0.50 16.48 7.42 87.90 0.65 17.13 16
14 O -0.58 -26.69 14.61 -3.05 -0.04 -26.73 16
15 N -0.61 -16.56 3.15 -799.67 -2.52 -19.08 16
16 C 0.14 4.90 4.81 46.75 0.22 5.13 16
17 C 0.15 7.48 6.90 86.44 0.60 8.08 16
18 N -0.64 -34.47 3.70 -716.61 -2.65 -37.13 16
19 C -0.24 -13.87 10.70 84.03 0.90 -12.97 16
20 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16
21 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16
22 N -0.95 -60.48 11.39 21.65 0.25 -60.24 16
23 Si 0.98 47.18 29.55 68.60 2.03 49.21 16
24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16
25 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16
26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
27 C 0.12 4.78 8.44 86.48 0.73 5.51 16
28 C 0.10 1.41 6.97 86.83 0.60 2.02 16
29 H 0.07 0.79 6.29 -2.38 -0.01 0.77 16
30 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16
31 H 0.05 0.75 6.25 -2.39 -0.01 0.74 16
32 H 0.08 1.22 6.60 -2.39 -0.02 1.20 16
33 H 0.07 1.56 5.86 -2.39 -0.01 1.54 16
34 H 0.05 0.44 5.89 -2.39 -0.01 0.43 16
35 H 0.09 0.67 7.81 -2.39 -0.02 0.66 16
36 H 0.05 0.56 6.71 -2.39 -0.02 0.54 16
37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16
38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
39 H 0.08 0.82 6.02 -2.38 -0.01 0.81 16
40 H 0.13 0.90 7.86 -2.39 -0.02 0.89 16
41 H 0.41 4.08 8.62 -92.70 -0.80 3.28 16
42 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16
43 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16
44 H 0.14 4.09 8.14 -2.39 -0.02 4.07 16
45 H 0.02 1.17 5.72 -2.39 -0.01 1.16 16
46 H 0.04 2.26 7.17 -2.39 -0.02 2.24 16
47 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16
48 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16
49 H 0.02 1.00 7.25 -2.39 -0.02 0.99 16
50 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16
51 H 0.12 1.09 8.06 -2.39 -0.02 1.07 16
Total: -1.00 -85.71 396.16 -1.07 -86.79
By element:
Atomic # 1 Polarization: 14.41 SS G_CDS: 0.15 Total: 14.56 kcal
Atomic # 6 Polarization: 21.89 SS G_CDS: 7.99 Total: 29.88 kcal
Atomic # 7 Polarization: -128.98 SS G_CDS: -11.15 Total: -140.13 kcal
Atomic # 8 Polarization: -40.21 SS G_CDS: -0.09 Total: -40.30 kcal
Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal
Total: -85.71 -1.07 -86.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001108580293.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.156 kcal
(2) G-P(sol) polarization free energy of solvation -85.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.555 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.630 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds