Wall clock time and date at job start Tue Mar 31 2020 21:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47059 * 2 1 4 4 C 1.46901 * 111.00112 * 293.95342 * 3 2 1 5 5 C 1.46894 * 111.00037 * 170.00163 * 3 2 1 6 6 C 1.52997 * 109.47405 * 189.99992 * 5 3 2 7 7 C 1.50705 * 109.47597 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99530 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00025 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99822 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.85431 * 37.34063 * 10 9 7 12 12 C 1.54623 * 110.97166 * 273.55077 * 10 9 7 13 13 C 1.51286 * 104.19583 * 217.04495 * 12 10 9 14 14 O 1.21283 * 124.94068 * 196.22850 * 13 12 10 15 15 N 1.34417 * 110.11517 * 16.49747 * 13 12 10 16 16 C 1.46497 * 124.35094 * 180.16242 * 15 13 12 17 17 C 1.53949 * 113.74131 * 38.76337 * 16 15 13 18 18 N 1.47809 * 86.03405 * 222.08543 * 17 16 15 19 19 C 1.36944 * 134.45428 * 204.64322 * 18 17 16 20 20 H 1.07995 * 120.00109 * 179.86787 * 19 18 17 21 21 C 1.38809 * 119.99873 * 359.86813 * 19 18 17 22 22 N 1.31620 * 120.00226 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46756 * 89.99879 * 23 21 19 25 25 H 1.48502 * 109.47125 * 210.00259 * 23 21 19 26 26 H 1.48502 * 109.46712 * 330.00143 * 23 21 19 27 27 C 1.47572 * 91.05547 * 24.54875 * 18 17 16 28 28 C 1.46762 * 111.30037 * 0.02562 * 15 13 12 29 29 H 1.08995 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47008 * 300.00206 * 1 2 3 31 31 H 1.08999 * 109.47400 * 59.99830 * 1 2 3 32 32 H 1.09000 * 109.47008 * 239.99793 * 2 1 3 33 33 H 1.08998 * 109.47074 * 119.99734 * 2 1 3 34 34 H 1.09004 * 109.47084 * 296.04796 * 4 3 2 35 35 H 1.09004 * 109.47053 * 56.04463 * 4 3 2 36 36 H 1.08998 * 109.47604 * 176.04321 * 4 3 2 37 37 H 1.08996 * 109.47352 * 69.99780 * 5 3 2 38 38 H 1.09004 * 109.46737 * 309.99677 * 5 3 2 39 39 H 1.09005 * 109.47137 * 59.99409 * 6 5 3 40 40 H 1.09005 * 109.47174 * 300.00059 * 6 5 3 41 41 H 0.96998 * 120.00156 * 0.02562 * 9 7 6 42 42 H 1.09000 * 110.48720 * 98.37029 * 12 10 9 43 43 H 1.08997 * 110.48721 * 335.72625 * 12 10 9 44 44 H 1.09000 * 112.94291 * 170.35350 * 16 15 13 45 45 H 1.08997 * 113.76893 * 336.34946 * 17 16 15 46 46 H 1.09000 * 113.76451 * 107.74481 * 17 16 15 47 47 H 0.96999 * 119.99865 * 180.02562 * 22 21 19 48 48 H 1.08996 * 113.77356 * 221.15141 * 27 18 17 49 49 H 1.09000 * 113.77234 * 89.75283 * 27 18 17 50 50 H 1.09004 * 110.38933 * 224.25961 * 28 15 13 51 51 H 1.08995 * 110.11843 * 102.33377 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 -1.2533 5 6 3.4684 1.4312 0.2381 6 6 3.8999 2.8791 0.4791 7 6 5.3861 2.9265 0.7240 8 8 6.0362 1.9027 0.7078 9 7 5.9928 4.1064 0.9609 10 6 7.4375 4.1523 1.1995 11 1 7.9581 3.4317 0.5686 12 6 7.7596 3.9144 2.6930 13 6 8.9274 4.8349 2.9719 14 8 9.6588 4.7564 3.9361 15 7 9.0328 5.7559 1.9985 16 6 10.0591 6.8003 1.9564 17 6 11.4459 6.3259 2.4274 18 7 11.5319 7.6175 3.1410 19 6 12.5636 8.4053 3.5773 20 1 12.3553 9.3340 4.0876 21 6 13.8769 8.0102 3.3636 22 7 14.1308 6.8785 2.7412 23 14 15.2843 9.0851 3.9581 24 1 15.6538 8.6956 5.3426 25 1 16.4561 8.9058 3.0638 26 1 14.8614 10.5086 3.9405 27 6 10.0605 7.7182 3.1922 28 6 7.9894 5.5787 0.9817 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1770 1.5791 -2.0860 35 1 0.5919 2.0179 -1.4052 36 1 1.9823 3.1099 -1.1988 37 1 3.9925 1.0360 -0.6321 38 1 3.7121 0.8290 1.1134 39 1 3.3758 3.2744 1.3493 40 1 3.6561 3.4814 -0.3962 41 1 5.4728 4.9251 0.9741 42 1 8.0440 2.8757 2.8612 43 1 6.9055 4.1825 3.3148 44 1 10.0781 7.3394 1.0092 45 1 11.4128 5.4600 3.0886 46 1 12.1710 6.2192 1.6206 47 1 15.0486 6.6023 2.5922 48 1 9.6816 8.7210 2.9951 49 1 9.6195 7.2623 4.0786 50 1 8.4141 5.6699 -0.0181 51 1 7.1986 6.3152 1.1237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108584018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:15 Heat of formation + Delta-G solvation = 3.619825 kcal Electronic energy + Delta-G solvation = -29163.365420 eV Core-core repulsion = 25100.164358 eV Total energy + Delta-G solvation = -4063.201062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.77551 -39.77378 -38.18339 -37.23193 -36.39076 -34.14860 -32.86472 -32.13597 -30.56491 -29.62672 -27.62775 -27.33769 -26.76029 -24.73002 -23.78865 -23.27846 -21.77740 -21.20849 -20.75144 -20.27641 -18.33461 -17.72404 -16.90942 -16.74809 -16.40141 -16.18151 -15.80119 -15.54622 -15.37904 -14.92264 -14.64718 -14.36972 -14.25370 -13.86134 -13.68017 -13.57317 -13.47777 -13.38897 -13.01666 -12.61036 -12.46088 -12.34811 -12.26563 -12.03384 -11.81429 -11.76544 -11.55306 -11.41608 -11.33953 -11.30050 -11.17876 -10.84774 -10.67926 -10.20734 -10.18253 -9.97295 -9.68297 -9.48568 -9.14651 -8.83063 -8.65576 -8.18935 -6.80490 -5.70964 -3.03096 2.31074 2.62634 2.93076 3.28067 3.43498 3.48106 3.49672 3.52406 4.20643 4.37411 4.45880 4.49109 4.52417 4.62677 4.69871 4.75651 4.82213 4.90015 4.97200 5.04910 5.05778 5.10772 5.23717 5.33009 5.34446 5.40541 5.45776 5.47141 5.54441 5.54651 5.56440 5.62049 5.68549 5.76344 5.77688 5.84389 6.13018 6.29199 6.52188 6.55720 6.56822 6.58587 6.87952 7.12040 7.30392 7.49258 7.59862 7.63870 7.88718 8.02357 8.55593 9.09559 9.75865 10.64852 11.46273 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.045841 B = 0.001670 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.658297 B =16759.931909 C =16898.162914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.069 3.931 6 C -0.137 4.137 7 C 0.517 3.483 8 O -0.535 6.535 9 N -0.721 5.721 10 C 0.135 3.865 11 H 0.110 0.890 12 C -0.166 4.166 13 C 0.515 3.485 14 O -0.507 6.507 15 N -0.606 5.606 16 C 0.098 3.902 17 C 0.153 3.847 18 N -0.604 5.604 19 C -0.221 4.221 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.112 3.888 28 C 0.100 3.900 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.403 0.597 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.254 0.746 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.085 0.915 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.381 -9.456 -10.709 32.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.132 4.132 5 C -0.059 4.059 6 C -0.177 4.177 7 C 0.303 3.697 8 O -0.411 6.411 9 N -0.374 5.374 10 C 0.029 3.971 11 H 0.128 0.872 12 C -0.208 4.208 13 C 0.301 3.699 14 O -0.381 6.381 15 N -0.341 5.341 16 C -0.004 4.004 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.349 4.349 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.015 4.015 28 C -0.025 4.025 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.238 0.762 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.104 0.896 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -28.328 -9.841 -9.783 31.544 hybrid contribution 0.885 0.581 -0.308 1.103 sum -27.443 -9.260 -10.091 30.671 Atomic orbital electron populations 1.21808 0.94733 1.01651 1.02487 1.22088 0.96136 0.88503 1.01077 1.62003 1.13778 1.16292 1.34887 1.22513 1.01636 0.99321 0.89760 1.21821 0.86618 0.95377 1.02080 1.21637 0.91853 0.99506 1.04746 1.20659 0.90066 0.83228 0.75745 1.90745 1.66767 1.33350 1.50278 1.45958 1.08330 1.09812 1.73273 1.21802 0.81196 0.97795 0.96322 0.87160 1.22820 0.98940 1.02049 0.96974 1.20614 0.85221 0.81469 0.82589 1.90795 1.46009 1.71957 1.29371 1.48499 1.30249 1.31816 1.23582 1.24084 0.88392 0.88456 0.99506 1.22785 0.89145 0.89949 0.95441 1.45702 0.99122 1.20989 1.67274 1.18987 0.84146 1.00289 1.31462 0.90196 1.24799 0.97035 0.97443 1.01134 1.69830 1.18607 1.22084 1.46069 0.86105 0.81990 0.79467 0.78099 1.21599 1.21632 1.20621 1.22911 0.87420 0.96235 0.94948 1.22182 0.91558 0.95009 0.93767 0.92250 0.91773 0.92674 0.94796 0.90577 0.95530 0.91045 0.91157 0.93826 0.89813 0.87801 0.88745 0.76150 0.87806 0.87924 0.87630 0.92646 0.91105 0.93642 0.93990 0.94262 0.89648 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.84 37.16 0.37 -0.34 16 2 C 0.05 0.29 5.68 -3.82 -0.02 0.27 16 3 N -0.55 -3.47 4.76 -242.92 -1.16 -4.63 16 4 C 0.02 0.08 9.13 60.07 0.55 0.63 16 5 C 0.07 0.49 4.25 -3.83 -0.02 0.48 16 6 C -0.14 -0.76 5.62 -27.88 -0.16 -0.92 16 7 C 0.52 4.35 7.83 -10.98 -0.09 4.27 16 8 O -0.54 -6.82 15.72 5.56 0.09 -6.73 16 9 N -0.72 -4.89 5.18 -52.22 -0.27 -5.16 16 10 C 0.13 1.28 3.43 -66.30 -0.23 1.05 16 11 H 0.11 1.19 7.72 -51.93 -0.40 0.79 16 12 C -0.17 -2.01 6.59 -26.74 -0.18 -2.19 16 13 C 0.52 8.80 7.42 -10.86 -0.08 8.72 16 14 O -0.51 -11.44 14.61 5.55 0.08 -11.36 16 15 N -0.61 -9.28 3.16 -166.64 -0.53 -9.81 16 16 C 0.10 1.87 4.81 -70.15 -0.34 1.53 16 17 C 0.15 3.85 6.90 -2.84 -0.02 3.83 16 18 N -0.60 -16.38 3.70 -177.91 -0.66 -17.04 16 19 C -0.22 -6.47 10.70 -15.06 -0.16 -6.63 16 20 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -28.34 11.39 55.49 0.63 -27.71 16 23 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.11 2.44 8.43 -2.97 -0.03 2.42 16 28 C 0.10 0.96 7.07 -3.12 -0.02 0.94 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.24 6.47 -51.93 -0.34 -0.09 16 32 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 33 H 0.08 0.45 7.93 -51.93 -0.41 0.04 16 34 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.07 0.31 6.30 -51.93 -0.33 -0.01 16 36 H 0.07 0.28 6.47 -51.93 -0.34 -0.05 16 37 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.36 6.55 -51.93 -0.34 0.02 16 41 H 0.40 1.52 8.37 -40.82 -0.34 1.18 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 44 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 45 H 0.06 1.55 5.75 -51.93 -0.30 1.25 16 46 H 0.07 1.93 7.16 -51.93 -0.37 1.55 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.04 0.91 7.22 -51.93 -0.37 0.54 16 50 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.07 0.53 7.77 -51.93 -0.40 0.12 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -37.51 403.75 -9.80 -47.31 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -8.54 Total: -2.47 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -0.51 Total: 13.73 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -1.98 Total: -64.34 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.51 -9.80 -47.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108584018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.934 kcal (2) G-P(sol) polarization free energy of solvation -37.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds