Wall clock time and date at job start Tue Mar 31 2020 21:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47059 * 2 1 4 4 C 1.46901 * 111.00112 * 293.95342 * 3 2 1 5 5 C 1.46894 * 111.00037 * 170.00163 * 3 2 1 6 6 C 1.52997 * 109.47405 * 189.99992 * 5 3 2 7 7 C 1.50705 * 109.47597 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99530 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00025 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99822 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.85431 * 37.34063 * 10 9 7 12 12 C 1.54623 * 110.97166 * 273.55077 * 10 9 7 13 13 C 1.51286 * 104.19583 * 217.04495 * 12 10 9 14 14 O 1.21283 * 124.94068 * 196.22850 * 13 12 10 15 15 N 1.34417 * 110.11517 * 16.49747 * 13 12 10 16 16 C 1.46497 * 124.35094 * 180.16242 * 15 13 12 17 17 C 1.53949 * 113.74131 * 38.76337 * 16 15 13 18 18 N 1.47809 * 86.03405 * 222.08543 * 17 16 15 19 19 C 1.36944 * 134.45428 * 204.64322 * 18 17 16 20 20 H 1.07995 * 120.00109 * 179.86787 * 19 18 17 21 21 C 1.38809 * 119.99873 * 359.86813 * 19 18 17 22 22 N 1.31620 * 120.00226 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46756 * 89.99879 * 23 21 19 25 25 H 1.48502 * 109.47125 * 210.00259 * 23 21 19 26 26 H 1.48502 * 109.46712 * 330.00143 * 23 21 19 27 27 C 1.47572 * 91.05547 * 24.54875 * 18 17 16 28 28 C 1.46762 * 111.30037 * 0.02562 * 15 13 12 29 29 H 1.08995 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47008 * 300.00206 * 1 2 3 31 31 H 1.08999 * 109.47400 * 59.99830 * 1 2 3 32 32 H 1.09000 * 109.47008 * 239.99793 * 2 1 3 33 33 H 1.08998 * 109.47074 * 119.99734 * 2 1 3 34 34 H 1.09004 * 109.47084 * 296.04796 * 4 3 2 35 35 H 1.09004 * 109.47053 * 56.04463 * 4 3 2 36 36 H 1.08998 * 109.47604 * 176.04321 * 4 3 2 37 37 H 1.08996 * 109.47352 * 69.99780 * 5 3 2 38 38 H 1.09004 * 109.46737 * 309.99677 * 5 3 2 39 39 H 1.09005 * 109.47137 * 59.99409 * 6 5 3 40 40 H 1.09005 * 109.47174 * 300.00059 * 6 5 3 41 41 H 0.96998 * 120.00156 * 0.02562 * 9 7 6 42 42 H 1.09000 * 110.48720 * 98.37029 * 12 10 9 43 43 H 1.08997 * 110.48721 * 335.72625 * 12 10 9 44 44 H 1.09000 * 112.94291 * 170.35350 * 16 15 13 45 45 H 1.08997 * 113.76893 * 336.34946 * 17 16 15 46 46 H 1.09000 * 113.76451 * 107.74481 * 17 16 15 47 47 H 0.96999 * 119.99865 * 180.02562 * 22 21 19 48 48 H 1.08996 * 113.77356 * 221.15141 * 27 18 17 49 49 H 1.09000 * 113.77234 * 89.75283 * 27 18 17 50 50 H 1.09004 * 110.38933 * 224.25961 * 28 15 13 51 51 H 1.08995 * 110.11843 * 102.33377 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 -1.2533 5 6 3.4684 1.4312 0.2381 6 6 3.8999 2.8791 0.4791 7 6 5.3861 2.9265 0.7240 8 8 6.0362 1.9027 0.7078 9 7 5.9928 4.1064 0.9609 10 6 7.4375 4.1523 1.1995 11 1 7.9581 3.4317 0.5686 12 6 7.7596 3.9144 2.6930 13 6 8.9274 4.8349 2.9719 14 8 9.6588 4.7564 3.9361 15 7 9.0328 5.7559 1.9985 16 6 10.0591 6.8003 1.9564 17 6 11.4459 6.3259 2.4274 18 7 11.5319 7.6175 3.1410 19 6 12.5636 8.4053 3.5773 20 1 12.3553 9.3340 4.0876 21 6 13.8769 8.0102 3.3636 22 7 14.1308 6.8785 2.7412 23 14 15.2843 9.0851 3.9581 24 1 15.6538 8.6956 5.3426 25 1 16.4561 8.9058 3.0638 26 1 14.8614 10.5086 3.9405 27 6 10.0605 7.7182 3.1922 28 6 7.9894 5.5787 0.9817 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1770 1.5791 -2.0860 35 1 0.5919 2.0179 -1.4052 36 1 1.9823 3.1099 -1.1988 37 1 3.9925 1.0360 -0.6321 38 1 3.7121 0.8290 1.1134 39 1 3.3758 3.2744 1.3493 40 1 3.6561 3.4814 -0.3962 41 1 5.4728 4.9251 0.9741 42 1 8.0440 2.8757 2.8612 43 1 6.9055 4.1825 3.3148 44 1 10.0781 7.3394 1.0092 45 1 11.4128 5.4600 3.0886 46 1 12.1710 6.2192 1.6206 47 1 15.0486 6.6023 2.5922 48 1 9.6816 8.7210 2.9951 49 1 9.6195 7.2623 4.0786 50 1 8.4141 5.6699 -0.0181 51 1 7.1986 6.3152 1.1237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108584018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:14 Heat of formation + Delta-G solvation = -25.919849 kcal Electronic energy + Delta-G solvation = -29164.646356 eV Core-core repulsion = 25100.164358 eV Total energy + Delta-G solvation = -4064.481998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.90611 -40.69211 -39.02099 -38.61585 -37.60422 -35.23748 -34.17791 -33.33540 -31.68843 -30.25222 -29.17821 -28.42139 -27.42141 -26.62238 -25.28088 -24.21146 -22.57909 -22.13820 -21.76026 -21.21079 -19.78694 -18.79496 -18.37040 -17.89561 -17.45739 -17.01395 -16.91899 -16.58421 -16.32951 -16.04419 -15.72629 -15.67121 -15.18196 -15.08124 -14.82498 -14.70084 -14.41205 -14.32801 -14.04442 -13.65105 -13.52765 -13.42040 -13.29504 -13.06321 -12.84256 -12.82024 -12.71416 -12.64243 -12.56066 -12.28233 -12.21883 -11.99951 -11.92012 -11.79377 -11.72119 -11.52740 -11.11316 -10.92175 -10.66225 -10.08870 -9.58529 -9.31554 -8.95050 -7.93007 -5.27899 1.42680 1.46578 1.55115 1.56381 1.67161 1.83658 2.16989 2.48411 3.01865 3.25461 3.34330 3.46481 3.50396 3.79161 3.82763 3.90267 4.02745 4.03464 4.17985 4.23955 4.25197 4.34140 4.51125 4.59019 4.60399 4.64349 4.64590 4.65636 4.69420 4.76235 4.83529 4.90246 4.92710 4.95147 5.01086 5.06531 5.08655 5.17461 5.20338 5.21729 5.39744 5.44728 5.46830 5.83752 5.88481 6.07391 6.13112 6.24141 6.58029 6.87361 7.21272 7.29998 7.56996 8.52342 9.24312 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.045841 B = 0.001670 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.658297 B =16759.931909 C =16898.162914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.548 5.548 4 C 0.013 3.987 5 C 0.071 3.929 6 C -0.125 4.125 7 C 0.517 3.483 8 O -0.583 6.583 9 N -0.702 5.702 10 C 0.149 3.851 11 H 0.098 0.902 12 C -0.153 4.153 13 C 0.503 3.497 14 O -0.574 6.574 15 N -0.605 5.605 16 C 0.137 3.863 17 C 0.146 3.854 18 N -0.635 5.635 19 C -0.238 4.238 20 H 0.087 0.913 21 C -0.069 4.069 22 N -0.955 5.955 23 Si 0.985 3.015 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.261 1.261 27 C 0.114 3.886 28 C 0.101 3.899 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.424 0.576 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.140 0.860 45 H 0.019 0.981 46 H 0.041 0.959 47 H 0.248 0.752 48 H 0.072 0.928 49 H 0.023 0.977 50 H 0.108 0.892 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.425 -7.374 -12.209 35.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.272 5.272 4 C -0.134 4.134 5 C -0.058 4.058 6 C -0.165 4.165 7 C 0.305 3.695 8 O -0.463 6.463 9 N -0.355 5.355 10 C 0.042 3.958 11 H 0.117 0.883 12 C -0.194 4.194 13 C 0.292 3.708 14 O -0.453 6.453 15 N -0.338 5.338 16 C 0.033 3.967 17 C 0.019 3.981 18 N -0.361 5.361 19 C -0.366 4.366 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.604 5.604 23 Si 0.812 3.188 24 H -0.219 1.219 25 H -0.217 1.217 26 H -0.185 1.185 27 C -0.012 4.012 28 C -0.021 4.021 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.263 0.737 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.157 0.843 45 H 0.037 0.963 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.126 0.874 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -31.481 -7.713 -11.328 34.335 hybrid contribution 1.746 -0.139 0.178 1.760 sum -29.735 -7.853 -11.150 32.713 Atomic orbital electron populations 1.21763 0.93658 1.02183 1.02503 1.22143 0.97012 0.88488 1.00612 1.62057 1.12960 1.16456 1.35736 1.22596 1.02102 0.99886 0.88848 1.21738 0.87108 0.96334 1.00579 1.21594 0.89505 0.98719 1.06646 1.21174 0.91053 0.82702 0.74589 1.90744 1.67945 1.35170 1.52419 1.45725 1.07081 1.10449 1.72289 1.21507 0.82816 0.97600 0.93901 0.88350 1.22741 0.97278 0.99969 0.99459 1.21488 0.85567 0.82039 0.81753 1.90761 1.48637 1.73680 1.32227 1.48453 1.30426 1.30359 1.24576 1.23398 0.85799 0.87930 0.99590 1.22595 0.92762 0.88630 0.94088 1.46140 1.01171 1.21243 1.67571 1.19465 0.85315 1.00843 1.30968 0.89480 1.25742 0.99767 0.98973 1.01742 1.70051 1.18602 1.24078 1.47665 0.84993 0.78287 0.78576 0.76938 1.21853 1.21685 1.18502 1.22994 0.84389 0.98257 0.95533 1.22532 0.90917 0.95758 0.92925 0.91544 0.92127 0.92162 0.95246 0.91174 0.96062 0.90337 0.89625 0.95557 0.91611 0.85952 0.86096 0.73705 0.88952 0.85818 0.84289 0.96319 0.94026 0.94280 0.91011 0.95912 0.87422 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.84 71.98 0.71 -0.46 16 2 C 0.05 0.50 5.68 86.30 0.49 0.99 16 3 N -0.55 -6.09 4.76 -922.46 -4.39 -10.48 16 4 C 0.01 0.10 9.13 127.69 1.17 1.27 16 5 C 0.07 0.93 4.25 86.30 0.37 1.30 16 6 C -0.12 -1.00 5.62 29.85 0.17 -0.83 16 7 C 0.52 7.40 7.83 87.66 0.69 8.09 16 8 O -0.58 -14.43 15.72 -3.03 -0.05 -14.48 16 9 N -0.70 -6.79 5.18 -437.52 -2.27 -9.06 16 10 C 0.15 2.40 3.43 46.05 0.16 2.56 16 11 H 0.10 1.94 7.72 -2.38 -0.02 1.92 16 12 C -0.15 -3.52 6.59 30.59 0.20 -3.32 16 13 C 0.50 17.24 7.42 87.90 0.65 17.89 16 14 O -0.57 -27.29 14.61 -3.04 -0.04 -27.34 16 15 N -0.60 -17.43 3.16 -799.71 -2.52 -19.96 16 16 C 0.14 5.03 4.81 46.75 0.22 5.25 16 17 C 0.15 7.62 6.90 86.44 0.60 8.21 16 18 N -0.63 -34.99 3.70 -716.78 -2.65 -37.64 16 19 C -0.24 -14.09 10.70 84.03 0.90 -13.19 16 20 H 0.09 4.87 7.83 -2.91 -0.02 4.84 16 21 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 22 N -0.96 -61.13 11.39 21.65 0.25 -60.88 16 23 Si 0.98 47.60 29.55 68.60 2.03 49.62 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 27 C 0.11 4.89 8.43 86.49 0.73 5.62 16 28 C 0.10 1.52 7.07 86.84 0.61 2.13 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.43 6.47 -2.39 -0.02 0.41 16 32 H 0.03 0.34 8.12 -2.39 -0.02 0.33 16 33 H 0.07 0.83 7.93 -2.39 -0.02 0.81 16 34 H 0.02 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.08 0.50 6.30 -2.39 -0.02 0.48 16 36 H 0.09 0.38 6.47 -2.39 -0.02 0.37 16 37 H 0.03 0.43 8.08 -2.39 -0.02 0.41 16 38 H 0.07 1.09 7.89 -2.38 -0.02 1.07 16 39 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.12 0.38 6.55 -2.38 -0.02 0.36 16 41 H 0.42 0.87 8.37 -92.71 -0.78 0.09 16 42 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.12 2.34 8.08 -2.39 -0.02 2.32 16 44 H 0.14 4.27 8.14 -2.39 -0.02 4.25 16 45 H 0.02 1.13 5.75 -2.39 -0.01 1.11 16 46 H 0.04 2.38 7.16 -2.39 -0.02 2.36 16 47 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 49 H 0.02 1.07 7.22 -2.39 -0.02 1.05 16 50 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 51 H 0.11 0.92 7.77 -2.39 -0.02 0.90 16 Total: -1.00 -88.87 403.75 -1.38 -90.25 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.15 Total: 8.14 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 8.13 Total: 31.82 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -11.59 Total: -138.02 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.09 Total: -41.81 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -88.87 -1.38 -90.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108584018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.327 kcal (2) G-P(sol) polarization free energy of solvation -88.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds